A citation-based method for searching scientific literature

Yann Geisselbrecht, Sebastian Frühwirth, Claudia Schroeder, Antonio J Pierik, Gabriele Klug, Lars-Oliver Essen. EMBO Rep 2012
Times Cited: 66







List of co-cited articles
763 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The cryptochromes: blue light photoreceptors in plants and animals.
Inês Chaves, Richard Pokorny, Martin Byrdin, Nathalie Hoang, Thorsten Ritz, Klaus Brettel, Lars-Oliver Essen, Gijsbertus T J van der Horst, Alfred Batschauer, Margaret Ahmad. Annu Rev Plant Biol 2011
496
74


Crystal structure of a prokaryotic (6-4) photolyase with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore.
Fan Zhang, Patrick Scheerer, Inga Oberpichler, Tilman Lamparter, Norbert Krauß. Proc Natl Acad Sci U S A 2013
63
55


A photolyase-like protein from Agrobacterium tumefaciens with an iron-sulfur cluster.
Inga Oberpichler, Antonio J Pierik, Janine Wesslowski, Richard Pokorny, Ran Rosen, Michal Vugman, Fan Zhang, Olivia Neubauer, Eliora Z Ron, Alfred Batschauer,[...]. PLoS One 2011
45
60

Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome.
Richard Pokorny, Tobias Klar, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Proc Natl Acad Sci U S A 2008
127
39

Crystal structures of an archaeal class II DNA photolyase and its complex with UV-damaged duplex DNA.
Stephan Kiontke, Yann Geisselbrecht, Richard Pokorny, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. EMBO J 2011
67
36

Crystal structure and mechanism of a DNA (6-4) photolyase.
Melanie J Maul, Thomas R M Barends, Andreas F Glas, Max J Cryle, Tatiana Domratcheva, Sabine Schneider, Ilme Schlichting, Thomas Carell. Angew Chem Int Ed Engl 2008
139
31

The class III cyclobutane pyrimidine dimer photolyase structure reveals a new antenna chromophore binding site and alternative photoreduction pathways.
Patrick Scheerer, Fan Zhang, Jacqueline Kalms, David von Stetten, Norbert Krauß, Inga Oberpichler, Tilman Lamparter. J Biol Chem 2015
38
55

Identification of a new cryptochrome class. Structure, function, and evolution.
Ronald Brudler, Kenichi Hitomi, Hiromi Daiyasu, Hiroyuki Toh, Ken-ichi Kucho, Masahiro Ishiura, Minoru Kanehisa, Victoria A Roberts, Takeshi Todo, John A Tainer,[...]. Mol Cell 2003
228
30

Structural biology of DNA photolyases and cryptochromes.
Markus Müller, Thomas Carell. Curr Opin Struct Biol 2009
88
28

Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes.
Marc Heijde, Gérald Zabulon, Florence Corellou, Tomoko Ishikawa, Johanna Brazard, Anwar Usman, Frédéric Sanchez, Pascal Plaza, Monique Martin, Angela Falciatore,[...]. Plant Cell Environ 2010
89
27

Crystal structure of DNA photolyase from Escherichia coli.
H W Park, S T Kim, A Sancar, J Deisenhofer. Science 1995
396
27

Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity.
Sacha Coesel, Manuela Mangogna, Tomoko Ishikawa, Marc Heijde, Alessandra Rogato, Giovanni Finazzi, Takeshi Todo, Chris Bowler, Angela Falciatore. EMBO Rep 2009
122
25

Dynamics and mechanism of repair of ultraviolet-induced (6-4) photoproduct by photolyase.
Jiang Li, Zheyun Liu, Chuang Tan, Xunmin Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. Nature 2010
138
25

Reaction mechanisms of DNA photolyase.
Klaus Brettel, Martin Byrdin. Curr Opin Struct Biol 2010
112
25


Intraprotein radical transfer during photoactivation of DNA photolyase.
C Aubert, M H Vos, P Mathis, A P Eker, K Brettel. Nature 2000
319
24

A cryptochrome-like protein is involved in the regulation of photosynthesis genes in Rhodobacter sphaeroides.
Anne-Kathrin Hendrischk, Sebastian Walter Frühwirth, Julia Moldt, Richard Pokorny, Sebastian Metz, Gebhard Kaiser, Andreas Jäger, Alfred Batschauer, Gabriele Klug. Mol Microbiol 2009
34
44

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair.
Alexandra Mees, Tobias Klar, Petra Gnau, Ulrich Hennecke, Andre P M Eker, Thomas Carell, Lars-Oliver Essen. Science 2004
268
22

Dynamics and mechanism of cyclobutane pyrimidine dimer repair by DNA photolyase.
Zheyun Liu, Chuang Tan, Xunmin Guo, Ya-Ting Kao, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2011
111
22

Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes.
Kenichi Hitomi, Luciano DiTacchio, Andrew S Arvai, Junpei Yamamoto, Sang-Tae Kim, Takeshi Todo, John A Tainer, Shigenori Iwai, Satchidananda Panda, Elizabeth D Getzoff. Proc Natl Acad Sci U S A 2009
92
21

Crystal structure of archaeal photolyase from Sulfolobus tokodaii with two FAD molecules: implication of a novel light-harvesting cofactor.
Masahiro Fujihashi, Nobutaka Numoto, Yukiko Kobayashi, Akira Mizushima, Masanari Tsujimura, Akira Nakamura, Yutaka Kawarabayasi, Kunio Miki. J Mol Biol 2007
56
25

The archaeal cofactor F0 is a light-harvesting antenna chromophore in eukaryotes.
Andreas F Glas, Melanie J Maul, Max Cryle, Thomas R M Barends, Sabine Schneider, Emine Kaya, Ilme Schlichting, Thomas Carell. Proc Natl Acad Sci U S A 2009
48
29

Discovery and functional analysis of a 4th electron-transferring tryptophan conserved exclusively in animal cryptochromes and (6-4) photolyases.
Pavel Müller, Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Klaus Brettel. Chem Commun (Camb) 2015
74
21

Purification and characterization of a type III photolyase from Caulobacter crescentus.
Nuri Oztürk, Ya-Ting Kao, Christopher P Selby, I Halil Kavakli, Carrie L Partch, Dongping Zhong, Aziz Sancar. Biochemistry 2008
39
33

A flavin binding cryptochrome photoreceptor responds to both blue and red light in Chlamydomonas reinhardtii.
Benedikt Beel, Katja Prager, Meike Spexard, Severin Sasso, Daniel Weiss, Nico Müller, Mark Heinnickel, David Dewez, Danielle Ikoma, Arthur R Grossman,[...]. Plant Cell 2012
98
19

More than a repair enzyme: Aspergillus nidulans photolyase-like CryA is a regulator of sexual development.
Ozgür Bayram, Christoph Biesemann, Sven Krappmann, Paul Galland, Gerhard H Braus. Mol Biol Cell 2008
93
19

Structural and evolutionary aspects of antenna chromophore usage by class II photolyases.
Stephan Kiontke, Petra Gnau, Reinhard Haselsberger, Alfred Batschauer, Lars-Oliver Essen. J Biol Chem 2014
32
40


Natural and non-natural antenna chromophores in the DNA photolyase from Thermus thermophilus.
Tobias Klar, Gebhard Kaiser, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Chembiochem 2006
39
30

Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana.
Chad A Brautigam, Barbara S Smith, Zhiquan Ma, Maya Palnitkar, Diana R Tomchick, Mischa Machius, Johann Deisenhofer. Proc Natl Acad Sci U S A 2004
218
18

Repair of the (6-4) photoproduct by DNA photolyase requires two photons.
Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Pascal Plaza, Klaus Brettel. Angew Chem Int Ed Engl 2013
40
30

Key Amino Acids in the Bacterial (6-4) Photolyase PhrB from Agrobacterium fabrum.
Dominik Graf, Janine Wesslowski, Hongju Ma, Patrick Scheerer, Norbert Krauß, Inga Oberpichler, Fan Zhang, Tilman Lamparter. PLoS One 2015
22
54

Searching for a photocycle of the cryptochrome photoreceptors.
Bin Liu, Hongtao Liu, Dongping Zhong, Chentao Lin. Curr Opin Plant Biol 2010
113
16


Cellular metabolites enhance the light sensitivity of Arabidopsis cryptochrome through alternate electron transfer pathways.
Christopher Engelhard, Xuecong Wang, David Robles, Julia Moldt, Lars-Oliver Essen, Alfred Batschauer, Robert Bittl, Margaret Ahmad. Plant Cell 2014
51
21

A novel photoreaction mechanism for the circadian blue light photoreceptor Drosophila cryptochrome.
Alex Berndt, Tilman Kottke, Helena Breitkreuz, Radovan Dvorsky, Sven Hennig, Michael Alexander, Eva Wolf. J Biol Chem 2007
146
15

Trichoderma atroviride PHR1, a fungal photolyase responsible for DNA repair, autoregulates its own photoinduction.
Gloria M Berrocal-Tito, Edgardo U Esquivel-Naranjo, Benjamin A Horwitz, Alfredo Herrera-Estrella. Eukaryot Cell 2007
57
17



Cryptochrome 3 from Arabidopsis thaliana: structural and functional analysis of its complex with a folate light antenna.
Tobias Klar, Richard Pokorny, Julia Moldt, Alfred Batschauer, Lars-Oliver Essen. J Mol Biol 2007
62
16


A novel cryptochrome in the diatom Phaeodactylum tricornutum influences the regulation of light-harvesting protein levels.
Matthias Juhas, Andrea von Zadow, Meike Spexard, Matthias Schmidt, Tilman Kottke, Claudia Büchel. FEBS J 2014
40
25

Determining complete electron flow in the cofactor photoreduction of oxidized photolyase.
Zheyun Liu, Chuang Tan, Xunmin Guo, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2013
72
15

A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts.
T Todo, H Takemori, H Ryo, M Ihara, T Matsunaga, O Nikaido, K Sato, T Nomura. Nature 1993
224
15

The cryptochromes.
Chentao Lin, Takeshi Todo. Genome Biol 2005
216
13

Light-induced electron transfer in a cryptochrome blue-light photoreceptor.
Baldissera Giovani, Martin Byrdin, Margaret Ahmad, Klaus Brettel. Nat Struct Biol 2003
194
13


Identification of cryptochrome DASH from vertebrates.
Hiromi Daiyasu, Tomoko Ishikawa, Kei-ichi Kuma, Shigenori Iwai, Takeshi Todo, Hiroyuki Toh. Genes Cells 2004
86
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.