A citation-based method for searching scientific literature

Anthony L Forget, Stephen C Kowalczykowski. Nature 2012
Times Cited: 129







List of co-cited articles
1260 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures.
Zhucheng Chen, Haijuan Yang, Nikola P Pavletich. Nature 2008
446
36

DNA sequence alignment by microhomology sampling during homologous recombination.
Zhi Qi, Sy Redding, Ja Yil Lee, Bryan Gibb, YoungHo Kwon, Hengyao Niu, William A Gaines, Patrick Sung, Eric C Greene. Cell 2015
118
29

RecA filament sliding on DNA facilitates homology search.
Kaushik Ragunathan, Cheng Liu, Taekjip Ha. Elife 2012
61
45

Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA.
Jason C Bell, Jody L Plank, Christopher C Dombrowski, Stephen C Kowalczykowski. Nature 2012
99
23

Direct observation of individual RecA filaments assembling on single DNA molecules.
Roberto Galletto, Ichiro Amitani, Ronald J Baskin, Stephen C Kowalczykowski. Nature 2006
172
22

Real-time observation of strand exchange reaction with high spatiotemporal resolution.
Kaushik Ragunathan, Chirlmin Joo, Taekjip Ha. Structure 2011
52
38

Mechanism of homology recognition in DNA recombination from dual-molecule experiments.
Iwijn De Vlaminck, Marijn T J van Loenhout, Ludovit Zweifel, Johan den Blanken, Koen Hooning, Susanne Hage, Jacob Kerssemakers, Cees Dekker. Mol Cell 2012
61
31


Homologous recombination in real time: DNA strand exchange by RecA.
Thijn van der Heijden, Mauro Modesti, Susanne Hage, Roland Kanaar, Claire Wyman, Cees Dekker. Mol Cell 2008
73
21

Processive translocation and DNA unwinding by individual RecBCD enzyme molecules.
P R Bianco, L R Brewer, M Corzett, R Balhorn, Y Yeh, S C Kowalczykowski, R J Baskin. Nature 2001
241
16


Mechanism of eukaryotic homologous recombination.
Joseph San Filippo, Patrick Sung, Hannah Klein. Annu Rev Biochem 2008
16

Real-time observation of RecA filament dynamics with single monomer resolution.
Chirlmin Joo, Sean A McKinney, Muneaki Nakamura, Ivan Rasnik, Sua Myong, Taekjip Ha. Cell 2006
205
15


RecBCD enzyme and the repair of double-stranded DNA breaks.
Mark S Dillingham, Stephen C Kowalczykowski. Microbiol Mol Biol Rev 2008
319
15

Mechanisms and principles of homology search during recombination.
Jörg Renkawitz, Claudio A Lademann, Stefan Jentsch. Nat Rev Mol Cell Biol 2014
82
18

RecA: Regulation and Mechanism of a Molecular Search Engine.
Jason C Bell, Stephen C Kowalczykowski. Trends Biochem Sci 2016
90
16

Polymerization and mechanical properties of single RecA-DNA filaments.
M Hegner, S B Smith, C Bustamante. Proc Natl Acad Sci U S A 1999
151
14

RecA bundles mediate homology pairing between distant sisters during DNA break repair.
Christian Lesterlin, Graeme Ball, Lothar Schermelleh, David J Sherratt. Nature 2014
105
14

DNA strand exchange proteins: a biochemical and physical comparison.
P R Bianco, R B Tracy, S C Kowalczykowski. Front Biosci 1998
298
14

An Overview of the Molecular Mechanisms of Recombinational DNA Repair.
Stephen C Kowalczykowski. Cold Spring Harb Perspect Biol 2015
232
14

Counting RAD51 proteins disassembling from nucleoprotein filaments under tension.
Joost van Mameren, Mauro Modesti, Roland Kanaar, Claire Wyman, Erwin J G Peterman, Gijs J L Wuite. Nature 2009
124
13

Increased chromosome mobility facilitates homology search during recombination.
Judith Miné-Hattab, Rodney Rothstein. Nat Cell Biol 2012
218
13

DNA RECOMBINATION. Base triplet stepping by the Rad51/RecA family of recombinases.
Ja Yil Lee, Tsuyoshi Terakawa, Zhi Qi, Justin B Steinfeld, Sy Redding, YoungHo Kwon, William A Gaines, Weixing Zhao, Patrick Sung, Eric C Greene. Science 2015
90
14

Dynamics of RecA filaments on single-stranded DNA.
Marijn T J van Loenhout, Thijn van der Heijden, Roland Kanaar, Claire Wyman, Cees Dekker. Nucleic Acids Res 2009
61
19

Motoring along with the bacterial RecA protein.
Michael M Cox. Nat Rev Mol Cell Biol 2007
167
12


SSB functions as a sliding platform that migrates on DNA via reptation.
Ruobo Zhou, Alexander G Kozlov, Rahul Roy, Jichuan Zhang, Sergey Korolev, Timothy M Lohman, Taekjip Ha. Cell 2011
117
11

SSB protein diffusion on single-stranded DNA stimulates RecA filament formation.
Rahul Roy, Alexander G Kozlov, Timothy M Lohman, Taekjip Ha. Nature 2009
177
11

STED nanoscopy combined with optical tweezers reveals protein dynamics on densely covered DNA.
Iddo Heller, Gerrit Sitters, Onno D Broekmans, Géraldine Farge, Carolin Menges, Wolfgang Wende, Stefan W Hell, Erwin J G Peterman, Gijs J L Wuite. Nat Methods 2013
97
11


Increased mobility of double-strand breaks requires Mec1, Rad9 and the homologous recombination machinery.
Vincent Dion, Véronique Kalck, Chihiro Horigome, Benjamin D Towbin, Susan M Gasser. Nat Cell Biol 2012
197
11


The structure of the E. coli recA protein monomer and polymer.
R M Story, I T Weber, T A Steitz. Nature 1992
661
11

A molecular throttle: the recombination hotspot chi controls DNA translocation by the RecBCD helicase.
Maria Spies, Piero R Bianco, Mark S Dillingham, Naofumi Handa, Ronald J Baskin, Stephen C Kowalczykowski. Cell 2003
141
10

Visualization of Rad54, a chromatin remodeling protein, translocating on single DNA molecules.
Ichiro Amitani, Ronald J Baskin, Stephen C Kowalczykowski. Mol Cell 2006
122
10




Monitoring homology search during DNA double-strand break repair in vivo.
Jörg Renkawitz, Claudio A Lademann, Marian Kalocsay, Stefan Jentsch. Mol Cell 2013
46
21

A practical guide to single-molecule FRET.
Rahul Roy, Sungchul Hohng, Taekjip Ha. Nat Methods 2008
10

Structure/function relationships in RecA protein-mediated homology recognition and strand exchange.
Mara Prentiss, Chantal Prévost, Claudia Danilowicz. Crit Rev Biochem Mol Biol 2015
40
25

Mechanics and Single-Molecule Interrogation of DNA Recombination.
Jason C Bell, Stephen C Kowalczykowski. Annu Rev Biochem 2016
40
25

Regulation of bacterial RecA protein function.
Michael M Cox. Crit Rev Biochem Mol Biol 2007
254
9

SSB as an organizer/mobilizer of genome maintenance complexes.
Robert D Shereda, Alexander G Kozlov, Timothy M Lohman, Michael M Cox, James L Keck. Crit Rev Biochem Mol Biol 2008
340
9

Direct imaging of human Rad51 nucleoprotein dynamics on individual DNA molecules.
Jovencio Hilario, Ichiro Amitani, Ronald J Baskin, Stephen C Kowalczykowski. Proc Natl Acad Sci U S A 2009
98
9

RecBCD enzyme switches lead motor subunits in response to chi recognition.
Maria Spies, Ichiro Amitani, Ronald J Baskin, Stephen C Kowalczykowski. Cell 2007
92
9

Direct observation of base-pair stepping by RNA polymerase.
Elio A Abbondanzieri, William J Greenleaf, Joshua W Shaevitz, Robert Landick, Steven M Block. Nature 2005
494
9


Similarity of the yeast RAD51 filament to the bacterial RecA filament.
T Ogawa, X Yu, A Shinohara, E H Egelman. Science 1993
544
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.