A citation-based method for searching scientific literature

Zhiyu Peng, Yanbing Cheng, Bertrand Chin-Ming Tan, Lin Kang, Zhijian Tian, Yuankun Zhu, Wenwei Zhang, Yu Liang, Xueda Hu, Xuemei Tan, Jing Guo, Zirui Dong, Yan Liang, Li Bao, Jun Wang. Nat Biotechnol 2012
Times Cited: 348







List of co-cited articles
943 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes.
Lily Bazak, Ami Haviv, Michal Barak, Jasmine Jacob-Hirsch, Patricia Deng, Rui Zhang, Farren J Isaacs, Gideon Rechavi, Jin Billy Li, Eli Eisenberg,[...]. Genome Res 2014
282
37

Identifying RNA editing sites using RNA sequencing data alone.
Gokul Ramaswami, Rui Zhang, Robert Piskol, Liam P Keegan, Patricia Deng, Mary A O'Connell, Jin Billy Li. Nat Methods 2013
222
37

A-to-I editing of coding and non-coding RNAs by ADARs.
Kazuko Nishikura. Nat Rev Mol Cell Biol 2016
356
34

RADAR: a rigorously annotated database of A-to-I RNA editing.
Gokul Ramaswami, Jin Billy Li. Nucleic Acids Res 2014
289
32

The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers.
Leng Han, Lixia Diao, Shuangxing Yu, Xiaoyan Xu, Jie Li, Rui Zhang, Yang Yang, Henrica M J Werner, A Karina Eterovic, Yuan Yuan,[...]. Cancer Cell 2015
238
32

Accurate identification of human Alu and non-Alu RNA editing sites.
Gokul Ramaswami, Wei Lin, Robert Piskol, Meng How Tan, Carrie Davis, Jin Billy Li. Nat Methods 2012
234
31

REDIportal: a comprehensive database of A-to-I RNA editing events in humans.
Ernesto Picardi, Anna Maria D'Erchia, Claudio Lo Giudice, Graziano Pesole. Nucleic Acids Res 2017
127
27


Accurate identification of A-to-I RNA editing in human by transcriptome sequencing.
Jae Hoon Bahn, Jae-Hyung Lee, Gang Li, Christopher Greer, Guangdun Peng, Xinshu Xiao. Genome Res 2012
224
26

Recoding RNA editing of AZIN1 predisposes to hepatocellular carcinoma.
Leilei Chen, Yan Li, Chi Ho Lin, Tim Hon Man Chan, Raymond Kwok Kei Chow, Yangyang Song, Ming Liu, Yun-Fei Yuan, Li Fu, Kar Lok Kong,[...]. Nat Med 2013
285
25

Dynamic landscape and regulation of RNA editing in mammals.
Meng How Tan, Qin Li, Raghuvaran Shanmugam, Robert Piskol, Jennefer Kohler, Amy N Young, Kaiwen Ivy Liu, Rui Zhang, Gokul Ramaswami, Kentaro Ariyoshi,[...]. Nature 2017
210
25

Profiling RNA editing in human tissues: towards the inosinome Atlas.
Ernesto Picardi, Caterina Manzari, Francesca Mastropasqua, Italia Aiello, Anna Maria D'Erchia, Graziano Pesole. Sci Rep 2015
116
21

Elevated RNA Editing Activity Is a Major Contributor to Transcriptomic Diversity in Tumors.
Nurit Paz-Yaacov, Lily Bazak, Ilana Buchumenski, Hagit T Porath, Miri Danan-Gotthold, Binyamin A Knisbacher, Eli Eisenberg, Erez Y Levanon. Cell Rep 2015
168
19

Systematic identification of abundant A-to-I editing sites in the human transcriptome.
Erez Y Levanon, Eli Eisenberg, Rodrigo Yelin, Sergey Nemzer, Martina Hallegger, Ronen Shemesh, Zipora Y Fligelman, Avi Shoshan, Sarah R Pollock, Dan Sztybel,[...]. Nat Biotechnol 2004
554
19

RNA editing by adenosine deaminases that act on RNA.
Brenda L Bass. Annu Rev Biochem 2002
860
19

Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing.
Jin Billy Li, Erez Y Levanon, Jung-Ki Yoon, John Aach, Bin Xie, Emily Leproust, Kun Zhang, Yuan Gao, George M Church. Science 2009
380
18

Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2.
M Higuchi, S Maas, F N Single, J Hartner, A Rozov, N Burnashev, D Feldmeyer, R Sprengel, P H Seeburg. Nature 2000
654
18

DARNED: a DAtabase of RNa EDiting in humans.
Anmol Kiran, Pavel V Baranov. Bioinformatics 2010
156
17

RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself.
Brian J Liddicoat, Robert Piskol, Alistair M Chalk, Gokul Ramaswami, Miyoko Higuchi, Jochen C Hartner, Jin Billy Li, Peter H Seeburg, Carl R Walkley. Science 2015
345
17

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
16

Systematic characterization of A-to-I RNA editing hotspots in microRNAs across human cancers.
Yumeng Wang, Xiaoyan Xu, Shuangxing Yu, Kang Jin Jeong, Zhicheng Zhou, Leng Han, Yiu Huen Tsang, Jun Li, Hu Chen, Lingegowda S Mangala,[...]. Genome Res 2017
82
19


Redirection of silencing targets by adenosine-to-inosine editing of miRNAs.
Yukio Kawahara, Boris Zinshteyn, Praveen Sethupathy, Hisashi Iizasa, Artemis G Hatzigeorgiou, Kazuko Nishikura. Science 2007
537
16

Predicting sites of ADAR editing in double-stranded RNA.
Julie M Eggington, Tom Greene, Brenda L Bass. Nat Commun 2011
199
16

High levels of RNA-editing site conservation amongst 15 laboratory mouse strains.
Petr Danecek, Christoffer Nellåker, Rebecca E McIntyre, Jorge E Buendia-Buendia, Suzannah Bumpstead, Chris P Ponting, Jonathan Flint, Richard Durbin, Thomas M Keane, David J Adams. Genome Biol 2012
113
15

Regulation of alternative splicing by RNA editing.
S M Rueter, T R Dawson, R B Emeson. Nature 1999
445
15

Regulation of serotonin-2C receptor G-protein coupling by RNA editing.
C M Burns, H Chu, S M Rueter, L K Hutchinson, H Canton, E Sanders-Bush, R B Emeson. Nature 1997
786
15

Principles Governing A-to-I RNA Editing in the Breast Cancer Transcriptome.
Debora Fumagalli, David Gacquer, Françoise Rothé, Anne Lefort, Frederick Libert, David Brown, Naima Kheddoumi, Adam Shlien, Tomasz Konopka, Roberto Salgado,[...]. Cell Rep 2015
121
14


HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
13

RNA editome in rhesus macaque shaped by purifying selection.
Jia-Yu Chen, Zhiyu Peng, Rongli Zhang, Xin-Zhuang Yang, Bertrand Chin-Ming Tan, Huaying Fang, Chu-Jun Liu, Mingming Shi, Zhi-Qiang Ye, Yong E Zhang,[...]. PLoS Genet 2014
55
23

The ADAR protein family.
Yiannis A Savva, Leila E Rieder, Robert A Reenan. Genome Biol 2012
133
13

A genome-wide map of hyper-edited RNA reveals numerous new sites.
Hagit T Porath, Shai Carmi, Erez Y Levanon. Nat Commun 2014
114
13

Modulation of microRNA editing, expression and processing by ADAR2 deaminase in glioblastoma.
Sara Tomaselli, Federica Galeano, Shahar Alon, Susanna Raho, Silvia Galardi, Vinicia Assunta Polito, Carlo Presutti, Sara Vincenti, Eli Eisenberg, Franco Locatelli,[...]. Genome Biol 2015
88
14



The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
12

Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature.
Gillian I Rice, Paul R Kasher, Gabriella M A Forte, Niamh M Mannion, Sam M Greenwood, Marcin Szynkiewicz, Jonathan E Dickerson, Sanjeev S Bhaskar, Massimiliano Zampini, Tracy A Briggs,[...]. Nat Genet 2012
438
12

REDItools: high-throughput RNA editing detection made easy.
Ernesto Picardi, Graziano Pesole. Bioinformatics 2013
125
12

The RNA-editing enzyme ADAR1 controls innate immune responses to RNA.
Niamh M Mannion, Sam M Greenwood, Robert Young, Sarah Cox, James Brindle, David Read, Christoffer Nellåker, Cornelia Vesely, Chris P Ponting, Paul J McLaughlin,[...]. Cell Rep 2014
291
12

A-to-I RNA Editing Contributes to Proteomic Diversity in Cancer.
Xinxin Peng, Xiaoyan Xu, Yumeng Wang, David H Hawke, Shuangxing Yu, Leng Han, Zhicheng Zhou, Kamalika Mojumdar, Kang Jin Jeong, Marilyne Labrie,[...]. Cancer Cell 2018
65
18

Widespread RNA and DNA sequence differences in the human transcriptome.
Mingyao Li, Isabel X Wang, Yun Li, Alan Bruzel, Allison L Richards, Jonathan M Toung, Vivian G Cheung. Science 2011
282
12

Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome.
Alekos Athanasiadis, Alexander Rich, Stefan Maas. PLoS Biol 2004
480
11

ADAR1 Activation Drives Leukemia Stem Cell Self-Renewal by Impairing Let-7 Biogenesis.
Maria Anna Zipeto, Angela C Court, Anil Sadarangani, Nathaniel P Delos Santos, Larisa Balaian, Hye-Jung Chun, Gabriel Pineda, Sheldon R Morris, Cayla N Mason, Ifat Geron,[...]. Cell Stem Cell 2016
104
11

Mammalian conserved ADAR targets comprise only a small fragment of the human editosome.
Yishay Pinto, Haim Y Cohen, Erez Y Levanon. Genome Biol 2014
115
11

A biochemical landscape of A-to-I RNA editing in the human brain transcriptome.
Masayuki Sakurai, Hiroki Ueda, Takanori Yano, Shunpei Okada, Hideki Terajima, Toutai Mitsuyama, Atsushi Toyoda, Asao Fujiyama, Hitomi Kawabata, Tsutomu Suzuki. Genome Res 2014
83
13

The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection.
Yao Yu, Hongxia Zhou, Yimeng Kong, Bohu Pan, Longxian Chen, Hongbing Wang, Pei Hao, Xuan Li. PLoS Genet 2016
38
28

Dynamic regulation of RNA editing in human brain development and disease.
Taeyoung Hwang, Chul-Kee Park, Anthony K L Leung, Yuan Gao, Thomas M Hyde, Joel E Kleinman, Anandita Rajpurohit, Ran Tao, Joo Heon Shin, Daniel R Weinberger. Nat Neurosci 2016
89
12

RNA editing in RHOQ promotes invasion potential in colorectal cancer.
Sae-Won Han, Hwang-Phill Kim, Jong-Yeon Shin, Eun-Goo Jeong, Won-Chul Lee, Keon Young Kim, Sang Youn Park, Dae-Won Lee, Jae-Kyung Won, Seung-Yong Jeong,[...]. J Exp Med 2014
57
19

Modulation of microRNA processing and expression through RNA editing by ADAR deaminases.
Weidong Yang, Thimmaiah P Chendrimada, Qingde Wang, Miyoko Higuchi, Peter H Seeburg, Ramin Shiekhattar, Kazuko Nishikura. Nat Struct Mol Biol 2006
533
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.