A citation-based method for searching scientific literature

Mitchell Guttman, John L Rinn. Nature 2012
Times Cited: 1409







List of co-cited articles
554 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
19

Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
17

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
17

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W Carey, John P Cassady,[...]. Nature 2009
14

Long noncoding RNA as modular scaffold of histone modification complexes.
Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordon K Wang, Fei Lan, Yang Shi, Eran Segal, Howard Y Chang. Science 2010
14

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
14

Long non-coding RNAs: new players in cell differentiation and development.
Alessandro Fatica, Irene Bozzoni. Nat Rev Genet 2014
14

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
12


Long non-coding RNAs: insights into functions.
Tim R Mercer, Marcel E Dinger, John S Mattick. Nat Rev Genet 2009
12

Evolution and functions of long noncoding RNAs.
Chris P Ponting, Peter L Oliver, Wolf Reik. Cell 2009
11

Non-coding RNAs in human disease.
Manel Esteller. Nat Rev Genet 2011
11

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.
Maite Huarte, Mitchell Guttman, David Feldser, Manuel Garber, Magdalena J Koziol, Daniela Kenzelmann-Broz, Ahmad M Khalil, Or Zuk, Ido Amit, Michal Rabani,[...]. Cell 2010
11

lincRNAs: genomics, evolution, and mechanisms.
Igor Ulitsky, David P Bartel. Cell 2013
11


Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
10

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Rajnish A Gupta, Nilay Shah, Kevin C Wang, Jeewon Kim, Hugo M Horlings, David J Wong, Miao-Chih Tsai, Tiffany Hung, Pedram Argani, John L Rinn,[...]. Nature 2010
10

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
9

The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation.
Vidisha Tripathi, Jonathan D Ellis, Zhen Shen, David Y Song, Qun Pan, Andrew T Watt, Susan M Freier, C Frank Bennett, Alok Sharma, Paula A Bubulya,[...]. Mol Cell 2010
9

Long noncoding RNAs with enhancer-like function in human cells.
Ulf Andersson Ørom, Thomas Derrien, Malte Beringer, Kiranmai Gumireddy, Alessandro Gardini, Giovanni Bussotti, Fan Lai, Matthias Zytnicki, Cedric Notredame, Qihong Huang,[...]. Cell 2010
8

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Ahmad M Khalil, Mitchell Guttman, Maite Huarte, Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, Bradley E Bernstein, Alexander van Oudenaarden,[...]. Proc Natl Acad Sci U S A 2009
8

Long Noncoding RNAs in Cancer Pathways.
Adam M Schmitt, Howard Y Chang. Cancer Cell 2016
8

Unique features of long non-coding RNA biogenesis and function.
Jeffrey J Quinn, Howard Y Chang. Nat Rev Genet 2016
8


Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
8

lincRNAs act in the circuitry controlling pluripotency and differentiation.
Mitchell Guttman, Julie Donaghey, Bryce W Carey, Manuel Garber, Jennifer K Grenier, Glen Munson, Geneva Young, Anne Bergstrom Lucas, Robert Ach, Laurakay Bruhn,[...]. Nature 2011
7

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
7

The multilayered complexity of ceRNA crosstalk and competition.
Yvonne Tay, John Rinn, Pier Paolo Pandolfi. Nature 2014
7

The landscape of long noncoding RNAs in the human transcriptome.
Matthew K Iyer, Yashar S Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R Barrette, John R Prensner, Joseph R Evans, Shuang Zhao,[...]. Nat Genet 2015
7

Linking Long Noncoding RNA Localization and Function.
Ling-Ling Chen. Trends Biochem Sci 2016
439
7

Discovery and annotation of long noncoding RNAs.
John S Mattick, John L Rinn. Nat Struct Mol Biol 2015
363
7

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.
Jun-Hao Li, Shun Liu, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang. Nucleic Acids Res 2014
6


Control of somatic tissue differentiation by the long non-coding RNA TINCR.
Markus Kretz, Zurab Siprashvili, Ci Chu, Dan E Webster, Ashley Zehnder, Kun Qu, Carolyn S Lee, Ross J Flockhart, Abigail F Groff, Jennifer Chow,[...]. Nature 2013
593
6

The emergence of lncRNAs in cancer biology.
John R Prensner, Arul M Chinnaiyan. Cancer Discov 2011
6

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.
Tiffany Hung, Yulei Wang, Michael F Lin, Ashley K Koegel, Yojiro Kotake, Gavin D Grant, Hugo M Horlings, Nilay Shah, Christopher Umbricht, Pei Wang,[...]. Nat Genet 2011
796
6

The evolution of lncRNA repertoires and expression patterns in tetrapods.
Anamaria Necsulea, Magali Soumillon, Maria Warnefors, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie C Baker, Frank Grützner, Henrik Kaessmann. Nature 2014
593
6

Gene regulation by the act of long non-coding RNA transcription.
Aleksandra E Kornienko, Philipp M Guenzl, Denise P Barlow, Florian M Pauler. BMC Biol 2013
451
6


Multiple knockout mouse models reveal lincRNAs are required for life and brain development.
Martin Sauvageau, Loyal A Goff, Simona Lodato, Boyan Bonev, Abigail F Groff, Chiara Gerhardinger, Diana B Sanchez-Gomez, Ezgi Hacisuleyman, Eric Li, Matthew Spence,[...]. Elife 2013
458
6

Cellular functions of long noncoding RNAs.
Run-Wen Yao, Yang Wang, Ling-Ling Chen. Nat Cell Biol 2019
422
6

The transcriptional landscape of the mammalian genome.
P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells,[...]. Science 2005
6

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.
Igor Ulitsky, Alena Shkumatava, Calvin H Jan, Hazel Sive, David P Bartel. Cell 2011
768
6

RNA maps reveal new RNA classes and a possible function for pervasive transcription.
Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Jörg Hackermüller, Ivo L Hofacker,[...]. Science 2007
6

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.
Kevin C Wang, Yul W Yang, Bo Liu, Amartya Sanyal, Ryan Corces-Zimmerman, Yong Chen, Bryan R Lajoie, Angeline Protacio, Ryan A Flynn, Rajnish A Gupta,[...]. Nature 2011
5

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome.
C J Brown, A Ballabio, J L Rupert, R G Lafreniere, M Grompe, R Tonlorenzi, H F Willard. Nature 1991
5

Genome-wide computational identification and manual annotation of human long noncoding RNA genes.
Hui Jia, Maureen Osak, Gireesh K Bogu, Lawrence W Stanton, Rory Johnson, Leonard Lipovich. RNA 2010
265
5

The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus.
C J Brown, B D Hendrich, J L Rupert, R G Lafrenière, Y Xing, J Lawrence, H F Willard. Cell 1992
929
5

Long non-coding RNAs and cancer: a new frontier of translational research?
R Spizzo, M I Almeida, A Colombatti, G A Calin. Oncogene 2012
713
5

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome.
Jing Zhao, Bryan K Sun, Jennifer A Erwin, Ji-Joon Song, Jeannie T Lee. Science 2008
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.