A citation-based method for searching scientific literature

Britt Adamson, Agata Smogorzewska, Frederic D Sigoillot, Randall W King, Stephen J Elledge. Nat Cell Biol 2012
Times Cited: 279







List of co-cited articles
1027 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
23

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
20

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal,[...]. Science 2007
18

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability.
Renee D Paulsen, Deena V Soni, Roy Wollman, Angela T Hahn, Muh-Ching Yee, Anna Guan, Jayne A Hesley, Steven C Miller, Evan F Cromwell, David E Solow-Cordero,[...]. Mol Cell 2009
380
16

Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.
Corina Ohle, Rafael Tesorero, Géza Schermann, Nikolay Dobrev, Irmgard Sinning, Tamás Fischer. Cell 2016
216
12

Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.
Petra Beli, Natalia Lukashchuk, Sebastian A Wagner, Brian T Weinert, Jesper V Olsen, Linda Baskcomb, Matthias Mann, Stephen P Jackson, Chunaram Choudhary. Mol Cell 2012
221
12

Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA.
Bettina Heinrich, Zhaiyi Zhang, Oleg Raitskin, Michael Hiller, Natalya Benderska, Annette M Hartmann, Laurent Bracco, David Elliott, Shani Ben-Ari, Hermona Soreq,[...]. J Biol Chem 2009
67
16

Alternative-NHEJ is a mechanistically distinct pathway of mammalian chromosome break repair.
Nicole Bennardo, Anita Cheng, Nick Huang, Jeremy M Stark. PLoS Genet 2008
560
11

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
351
11


Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
150
10

Repair of strand breaks by homologous recombination.
Maria Jasin, Rodney Rothstein. Cold Spring Harb Perspect Biol 2013
493
9

The NORAD lncRNA assembles a topoisomerase complex critical for genome stability.
Mathias Munschauer, Celina T Nguyen, Klara Sirokman, Christina R Hartigan, Larson Hogstrom, Jesse M Engreitz, Jacob C Ulirsch, Charles P Fulco, Vidya Subramanian, Jenny Chen,[...]. Nature 2018
173
9

XRCC3 promotes homology-directed repair of DNA damage in mammalian cells.
A J Pierce, R D Johnson, L H Thompson, M Jasin. Genes Dev 1999
9

PRP19 transforms into a sensor of RPA-ssDNA after DNA damage and drives ATR activation via a ubiquitin-mediated circuitry.
Alexandre Maréchal, Ju-Mei Li, Xiao Ye Ji, Ching-Shyi Wu, Stephanie A Yazinski, Hai Dang Nguyen, Shizhou Liu, Amanda E Jiménez, Jianping Jin, Lee Zou. Mol Cell 2014
154
9

A role for small RNAs in DNA double-strand break repair.
Wei Wei, Zhaoqing Ba, Min Gao, Yang Wu, Yanting Ma, Simon Amiard, Charles I White, Jannie Michaela Rendtlew Danielsen, Yun-Gui Yang, Yijun Qi. Cell 2012
393
9

Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks.
Flavia Michelini, Sethuramasundaram Pitchiaya, Valerio Vitelli, Sheetal Sharma, Ubaldo Gioia, Fabio Pessina, Matteo Cabrini, Yejun Wang, Ilaria Capozzo, Fabio Iannelli,[...]. Nat Cell Biol 2017
174
9

Identification of a BRCA1-mRNA splicing complex required for efficient DNA repair and maintenance of genomic stability.
Kienan I Savage, Julia J Gorski, Eliana M Barros, Gareth W Irwin, Lorenzo Manti, Alexander J Powell, Andrea Pellagatti, Natalia Lukashchuk, Dennis J McCance, W Glenn McCluggage,[...]. Mol Cell 2014
112
9

Regulation of DNA-end resection by hnRNPU-like proteins promotes DNA double-strand break signaling and repair.
Sophie E Polo, Andrew N Blackford, J Ross Chapman, Linda Baskcomb, Serge Gravel, Andre Rusch, Anoushka Thomas, Rachel Blundred, Philippa Smith, Julia Kzhyshkowska,[...]. Mol Cell 2012
122
9

Playing the end game: DNA double-strand break repair pathway choice.
J Ross Chapman, Martin R G Taylor, Simon J Boulton. Mol Cell 2012
9

BRCA2 controls DNA:RNA hybrid level at DSBs by mediating RNase H2 recruitment.
Giuseppina D'Alessandro, Donna Rose Whelan, Sean Michael Howard, Valerio Vitelli, Xavier Renaudin, Marek Adamowicz, Fabio Iannelli, Corey Winston Jones-Weinert, MiYoung Lee, Valentina Matti,[...]. Nat Commun 2018
109
9

Specific killing of BRCA2-deficient tumours with inhibitors of poly(ADP-ribose) polymerase.
Helen E Bryant, Niklas Schultz, Huw D Thomas, Kayan M Parker, Dan Flower, Elena Lopez, Suzanne Kyle, Mark Meuth, Nicola J Curtin, Thomas Helleday. Nature 2005
8

RBMX: a regulator for maintenance and centromeric protection of sister chromatid cohesion.
Sachihiro Matsunaga, Hideaki Takata, Akihiro Morimoto, Kayoko Hayashihara, Tsunehito Higashi, Kouhei Akatsuchi, Eri Mizusawa, Mariko Yamakawa, Mamoru Ashida, Tomoko M Matsunaga,[...]. Cell Rep 2012
49
16

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair.
Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil Dimitrov, Shailja Pathania, Kristine M McKinney, Matthew L Eaton,[...]. Mol Cell 2015
239
8


ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
488
8

Proteome-wide identification of poly(ADP-Ribosyl)ation targets in different genotoxic stress responses.
Stephanie Jungmichel, Florian Rosenthal, Matthias Altmeyer, Jiri Lukas, Michael O Hottiger, Michael L Nielsen. Mol Cell 2013
225
8

Transcript-RNA-templated DNA recombination and repair.
Havva Keskin, Ying Shen, Fei Huang, Mikir Patel, Taehwan Yang, Katie Ashley, Alexander V Mazin, Francesca Storici. Nature 2014
200
8

A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage.
Danny M Chou, Britt Adamson, Noah E Dephoure, Xu Tan, Amanda C Nottke, Kristen E Hurov, Steven P Gygi, Monica P Colaiácovo, Stephen J Elledge. Proc Natl Acad Sci U S A 2010
387
8

A Systematic Analysis of Factors Localized to Damaged Chromatin Reveals PARP-Dependent Recruitment of Transcription Factors.
Lior Izhar, Britt Adamson, Alberto Ciccia, Jedd Lewis, Laura Pontano-Vaites, Yumei Leng, Anthony C Liang, Thomas F Westbrook, J Wade Harper, Stephen J Elledge. Cell Rep 2015
96
8

Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.
Wei-Ting Lu, Ben R Hawley, George L Skalka, Robert A Baldock, Ewan M Smith, Aldo S Bader, Michal Malewicz, Felicity Z Watts, Ania Wilczynska, Martin Bushell. Nat Commun 2018
110
8

Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response.
Martin V Bennetzen, Dorthe Helena Larsen, Jakob Bunkenborg, Jiri Bartek, Jiri Lukas, Jens S Andersen. Mol Cell Proteomics 2010
190
8

CRISPR screens identify genomic ribonucleotides as a source of PARP-trapping lesions.
Michal Zimmermann, Olga Murina, Martin A M Reijns, Angelo Agathanggelou, Rachel Challis, Žygimantė Tarnauskaitė, Morwenna Muir, Adeline Fluteau, Michael Aregger, Andrea McEwan,[...]. Nature 2018
169
8

Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy.
Hannah Farmer, Nuala McCabe, Christopher J Lord, Andrew N J Tutt, Damian A Johnson, Tobias B Richardson, Manuela Santarosa, Krystyna J Dillon, Ian Hickson, Charlotte Knights,[...]. Nature 2005
7

Genome-scale CRISPR-Cas9 knockout screening in human cells.
Ophir Shalem, Neville E Sanjana, Ella Hartenian, Xi Shi, David A Scott, Tarjei Mikkelson, Dirk Heckl, Benjamin L Ebert, David E Root, John G Doench,[...]. Science 2014
7

Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.
Nadine K Kolas, J Ross Chapman, Shinichiro Nakada, Jarkko Ylanko, Richard Chahwan, Frédéric D Sweeney, Stephanie Panier, Megan Mendez, Jan Wildenhain, Timothy M Thomson,[...]. Science 2007
674
7

A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice.
Cristina Escribano-Díaz, Alexandre Orthwein, Amélie Fradet-Turcotte, Mengtan Xing, Jordan T F Young, Ján Tkáč, Michael A Cook, Adam P Rosebrock, Meagan Munro, Marella D Canny,[...]. Mol Cell 2013
572
7


PARP-1 dependent recruitment of the amyotrophic lateral sclerosis-associated protein FUS/TLS to sites of oxidative DNA damage.
Stuart L Rulten, Amy Rotheray, Ryan L Green, Gabrielle J Grundy, Duncan A Q Moore, Fernando Gómez-Herreros, Majid Hafezparast, Keith W Caldecott. Nucleic Acids Res 2014
105
7

The RNA-binding protein fused in sarcoma (FUS) functions downstream of poly(ADP-ribose) polymerase (PARP) in response to DNA damage.
Adam S Mastrocola, Sang Hwa Kim, Anthony T Trinh, Lance A Rodenkirch, Randal S Tibbetts. J Biol Chem 2013
145
7

EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks.
Judit Domingo-Prim, Martin Endara-Coll, Franziska Bonath, Sonia Jimeno, Rosario Prados-Carvajal, Marc R Friedländer, Pablo Huertas, Neus Visa. Nat Commun 2019
53
13

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
142
7


DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal.
Sébastien Britton, Emma Dernoncourt, Christine Delteil, Carine Froment, Odile Schiltz, Bernard Salles, Philippe Frit, Patrick Calsou. Nucleic Acids Res 2014
108
7

DEAD Box 1 Facilitates Removal of RNA and Homologous Recombination at DNA Double-Strand Breaks.
Lei Li, Devon R Germain, Ho-Yin Poon, Matthew R Hildebrandt, Elizabeth A Monckton, Darin McDonald, Michael J Hendzel, Roseline Godbout. Mol Cell Biol 2016
75
9

Quantitative Proteomic Atlas of Ubiquitination and Acetylation in the DNA Damage Response.
Andrew E H Elia, Alexander P Boardman, David C Wang, Edward L Huttlin, Robert A Everley, Noah Dephoure, Chunshui Zhou, Itay Koren, Steven P Gygi, Stephen J Elledge. Mol Cell 2015
192
7

Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation.
Ahmed Moursy, Frédéric H-T Allain, Antoine Cléry. Nucleic Acids Res 2014
35
17

Novel domains in the hnRNP G/RBMX protein with distinct roles in RNA binding and targeting nascent transcripts.
Rasha Kanhoush, Brent Beenders, Caroline Perrin, Jacques Moreau, Michel Bellini, May Penrad-Mobayed. Nucleus 2010
26
23

Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11.
Katharina Schlacher, Nicole Christ, Nicolas Siaud, Akinori Egashira, Hong Wu, Maria Jasin. Cell 2011
754
6

The shieldin complex mediates 53BP1-dependent DNA repair.
Sylvie M Noordermeer, Salomé Adam, Dheva Setiaputra, Marco Barazas, Stephen J Pettitt, Alexanda K Ling, Michele Olivieri, Alejandro Álvarez-Quilón, Nathalie Moatti, Michal Zimmermann,[...]. Nature 2018
257
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.