A citation-based method for searching scientific literature

Sophie E Polo, Andrew N Blackford, J Ross Chapman, Linda Baskcomb, Serge Gravel, Andre Rusch, Anoushka Thomas, Rachel Blundred, Philippa Smith, Julia Kzhyshkowska, Thomas Dobner, A Malcolm R Taylor, Andrew S Turnell, Grant S Stewart, Roger J Grand, Stephen P Jackson. Mol Cell 2012
Times Cited: 122







List of co-cited articles
1219 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
33

A genome-wide homologous recombination screen identifies the RNA-binding protein RBMX as a component of the DNA-damage response.
Britt Adamson, Agata Smogorzewska, Frederic D Sigoillot, Randall W King, Stephen J Elledge. Nat Cell Biol 2012
279
33

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
28

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal,[...]. Science 2007
26

DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal.
Sébastien Britton, Emma Dernoncourt, Christine Delteil, Carine Froment, Odile Schiltz, Bernard Salles, Philippe Frit, Patrick Calsou. Nucleic Acids Res 2014
108
24

Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.
Petra Beli, Natalia Lukashchuk, Sebastian A Wagner, Brian T Weinert, Jesper V Olsen, Linda Baskcomb, Matthias Mann, Stephen P Jackson, Chunaram Choudhary. Mol Cell 2012
221
19

The RNA-binding protein fused in sarcoma (FUS) functions downstream of poly(ADP-ribose) polymerase (PARP) in response to DNA damage.
Adam S Mastrocola, Sang Hwa Kim, Anthony T Trinh, Lance A Rodenkirch, Randal S Tibbetts. J Biol Chem 2013
145
19

PARP activation regulates the RNA-binding protein NONO in the DNA damage response to DNA double-strand breaks.
Jana Krietsch, Marie-Christine Caron, Jean-Philippe Gagné, Chantal Ethier, Julien Vignard, Michel Vincent, Michèle Rouleau, Michael J Hendzel, Guy G Poirier, Jean-Yves Masson. Nucleic Acids Res 2012
101
18

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
351
17

The role of hnRPUL1 involved in DNA damage response is related to PARP1.
Zehui Hong, Jie Jiang, Jiaolong Ma, Shikui Dai, Ting Xu, Hui Li, Akira Yasui. PLoS One 2013
30
53

Interaction of FUS and HDAC1 regulates DNA damage response and repair in neurons.
Wen-Yuan Wang, Ling Pan, Susan C Su, Emma J Quinn, Megumi Sasaki, Jessica C Jimenez, Ian R A Mackenzie, Eric J Huang, Li-Huei Tsai. Nat Neurosci 2013
251
15

PRP19 transforms into a sensor of RPA-ssDNA after DNA damage and drives ATR activation via a ubiquitin-mediated circuitry.
Alexandre Maréchal, Ju-Mei Li, Xiao Ye Ji, Ching-Shyi Wu, Stephanie A Yazinski, Hai Dang Nguyen, Shizhou Liu, Amanda E Jiménez, Jianping Jin, Lee Zou. Mol Cell 2014
154
14

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability.
Renee D Paulsen, Deena V Soni, Roy Wollman, Angela T Hahn, Muh-Ching Yee, Anna Guan, Jayne A Hesley, Steven C Miller, Evan F Cromwell, David E Solow-Cordero,[...]. Mol Cell 2009
380
14

A BRCA1-interacting lncRNA regulates homologous recombination.
Vivek Sharma, Simran Khurana, Nard Kubben, Kotb Abdelmohsen, Philipp Oberdoerffer, Myriam Gorospe, Tom Misteli. EMBO Rep 2015
86
16

Human CtIP promotes DNA end resection.
Alessandro A Sartori, Claudia Lukas, Julia Coates, Martin Mistrik, Shuang Fu, Jiri Bartek, Richard Baer, Jiri Lukas, Stephen P Jackson. Nature 2007
939
13

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
488
13

PARP-1 dependent recruitment of the amyotrophic lateral sclerosis-associated protein FUS/TLS to sites of oxidative DNA damage.
Stuart L Rulten, Amy Rotheray, Ryan L Green, Gabrielle J Grundy, Duncan A Q Moore, Fernando Gómez-Herreros, Majid Hafezparast, Keith W Caldecott. Nucleic Acids Res 2014
105
13

DNA damage: RNA-binding proteins protect from near and far.
Martin Dutertre, Sarah Lambert, Aura Carreira, Mounira Amor-Guéret, Stéphan Vagner. Trends Biochem Sci 2014
79
16

Alternative-NHEJ is a mechanistically distinct pathway of mammalian chromosome break repair.
Nicole Bennardo, Anita Cheng, Nick Huang, Jeremy M Stark. PLoS Genet 2008
560
12

Requirement of heterogeneous nuclear ribonucleoprotein C for BRCA gene expression and homologous recombination.
Rachel W Anantha, Allen L Alcivar, Jianglin Ma, Hong Cai, Srilatha Simhadri, Jernej Ule, Julian König, Bing Xia. PLoS One 2013
50
24

A role for small RNAs in DNA double-strand break repair.
Wei Wei, Zhaoqing Ba, Min Gao, Yang Wu, Yanting Ma, Simon Amiard, Charles I White, Jannie Michaela Rendtlew Danielsen, Yun-Gui Yang, Yijun Qi. Cell 2012
393
12

Playing the end game: DNA double-strand break repair pathway choice.
J Ross Chapman, Martin R G Taylor, Simon J Boulton. Mol Cell 2012
11

Mechanism of eukaryotic homologous recombination.
Joseph San Filippo, Patrick Sung, Hannah Klein. Annu Rev Biochem 2008
11

XRCC3 promotes homology-directed repair of DNA damage in mammalian cells.
A J Pierce, R D Johnson, L H Thompson, M Jasin. Genes Dev 1999
11

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
371
11

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
11

Identification of a BRCA1-mRNA splicing complex required for efficient DNA repair and maintenance of genomic stability.
Kienan I Savage, Julia J Gorski, Eliana M Barros, Gareth W Irwin, Lorenzo Manti, Alexander J Powell, Andrea Pellagatti, Natalia Lukashchuk, Dennis J McCance, W Glenn McCluggage,[...]. Mol Cell 2014
112
11

Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose).
Matthias Altmeyer, Kai J Neelsen, Federico Teloni, Irina Pozdnyakova, Stefania Pellegrino, Merete Grøfte, Maj-Britt Druedahl Rask, Werner Streicher, Stephanie Jungmichel, Michael Lund Nielsen,[...]. Nat Commun 2015
308
11

A Systematic Analysis of Factors Localized to Damaged Chromatin Reveals PARP-Dependent Recruitment of Transcription Factors.
Lior Izhar, Britt Adamson, Alberto Ciccia, Jedd Lewis, Laura Pontano-Vaites, Yumei Leng, Anthony C Liang, Thomas F Westbrook, J Wade Harper, Stephen J Elledge. Cell Rep 2015
96
11

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
456
11

Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage.
Joshua A Betts, Mahdi Moradi Marjaneh, Fares Al-Ejeh, Yi Chieh Lim, Wei Shi, Haran Sivakumaran, Romain Tropée, Ann-Marie Patch, Michael B Clark, Nenad Bartonicek,[...]. Am J Hum Genet 2017
57
19

A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice.
Cristina Escribano-Díaz, Alexandre Orthwein, Amélie Fradet-Turcotte, Mengtan Xing, Jordan T F Young, Ján Tkáč, Michael A Cook, Adam P Rosebrock, Meagan Munro, Marella D Canny,[...]. Mol Cell 2013
572
10

Spatial organization of the mammalian genome surveillance machinery in response to DNA strand breaks.
Simon Bekker-Jensen, Claudia Lukas, Risa Kitagawa, Fredrik Melander, Michael B Kastan, Jiri Bartek, Jiri Lukas. J Cell Biol 2006
482
10

Proteome-wide identification of poly(ADP-Ribosyl)ation targets in different genotoxic stress responses.
Stephanie Jungmichel, Florian Rosenthal, Matthias Altmeyer, Jiri Lukas, Michael O Hottiger, Michael L Nielsen. Mol Cell 2013
225
10

Specific killing of BRCA2-deficient tumours with inhibitors of poly(ADP-ribose) polymerase.
Helen E Bryant, Niklas Schultz, Huw D Thomas, Kayan M Parker, Dan Flower, Elena Lopez, Suzanne Kyle, Mark Meuth, Nicola J Curtin, Thomas Helleday. Nature 2005
10

Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy.
Hannah Farmer, Nuala McCabe, Christopher J Lord, Andrew N J Tutt, Damian A Johnson, Tobias B Richardson, Manuela Santarosa, Krystyna J Dillon, Ian Hickson, Charlotte Knights,[...]. Nature 2005
10

The chromatin scaffold protein SAFB1 renders chromatin permissive for DNA damage signaling.
Matthias Altmeyer, Luis Toledo, Thorkell Gudjonsson, Merete Grøfte, Maj-Britt Rask, Claudia Lukas, Vyacheslav Akimov, Blagoy Blagoev, Jiri Bartek, Jiri Lukas. Mol Cell 2013
49
20


A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.
Maite Huarte, Mitchell Guttman, David Feldser, Manuel Garber, Magdalena J Koziol, Daniela Kenzelmann-Broz, Ahmad M Khalil, Or Zuk, Ido Amit, Michal Rabani,[...]. Cell 2010
10


Transcript-RNA-templated DNA recombination and repair.
Havva Keskin, Ying Shen, Fei Huang, Mikir Patel, Taehwan Yang, Katie Ashley, Alexander V Mazin, Francesca Storici. Nature 2014
200
10

PARP1-dependent kinetics of recruitment of MRE11 and NBS1 proteins to multiple DNA damage sites.
Jean-François Haince, Darin McDonald, Amélie Rodrigue, Ugo Déry, Jean-Yves Masson, Michael J Hendzel, Guy G Poirier. J Biol Chem 2008
362
9

53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks.
Samuel F Bunting, Elsa Callén, Nancy Wong, Hua-Tang Chen, Federica Polato, Amanda Gunn, Anne Bothmer, Niklas Feldhahn, Oscar Fernandez-Capetillo, Liu Cao,[...]. Cell 2010
9

Non-coding RNAs in DNA damage and repair.
Vivek Sharma, Tom Misteli. FEBS Lett 2013
58
15

The splicing-factor related protein SFPQ/PSF interacts with RAD51D and is necessary for homology-directed repair and sister chromatid cohesion.
Changanamkandath Rajesh, Dustin K Baker, Andrew J Pierce, Douglas L Pittman. Nucleic Acids Res 2011
71
12

The hnRNP family: insights into their role in health and disease.
Thomas Geuens, Delphine Bouhy, Vincent Timmerman. Hum Genet 2016
407
9

Double-strand break end resection and repair pathway choice.
Lorraine S Symington, Jean Gautier. Annu Rev Genet 2011
931
8

The Ewing sarcoma protein regulates DNA damage-induced alternative splicing.
Maria Paola Paronetto, Belén Miñana, Juan Valcárcel. Mol Cell 2011
117
8

Defining the RGG/RG motif.
Palaniraja Thandapani, Timothy R O'Connor, Timothy L Bailey, Stéphane Richard. Mol Cell 2013
336
8

Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination.
Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, Erica M Manion, Niraj M Shanbhag, Maria Victoria Botuyan, Georges Mer, Roger A Greenberg. Nat Struct Mol Biol 2013
332
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.