A citation-based method for searching scientific literature

Colby Chiang, Jessie C Jacobsen, Carl Ernst, Carrie Hanscom, Adrian Heilbut, Ian Blumenthal, Ryan E Mills, Andrew Kirby, Amelia M Lindgren, Skye R Rudiger, Clive J McLaughlan, C Simon Bawden, Suzanne J Reid, Richard L M Faull, Russell G Snell, Ira M Hall, Yiping Shen, Toshiro K Ohsumi, Mark L Borowsky, Mark J Daly, Charles Lee, Cynthia C Morton, Marcy E MacDonald, James F Gusella, Michael E Talkowski. Nat Genet 2012
Times Cited: 170







List of co-cited articles
733 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
51

Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline.
Wigard P Kloosterman, Victor Guryev, Mark van Roosmalen, Karen J Duran, Ewart de Bruijn, Saskia C M Bakker, Tom Letteboer, Bernadette van Nesselrooij, Ron Hochstenbach, Martin Poot,[...]. Hum Mol Genet 2011
210
39

Constitutional chromothripsis rearrangements involve clustered double-stranded DNA breaks and nonhomologous repair mechanisms.
Wigard P Kloosterman, Masoumeh Tavakoli-Yaraki, Markus J van Roosmalen, Ellen van Binsbergen, Ivo Renkens, Karen Duran, Lucia Ballarati, Sarah Vergult, Daniela Giardino, Kerstin Hansson,[...]. Cell Rep 2012
157
39

Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements.
Pengfei Liu, Ayelet Erez, Sandesh C Sreenath Nagamani, Shweta U Dhar, Katarzyna E Kołodziejska, Avinash V Dharmadhikari, M Lance Cooper, Joanna Wiszniewska, Feng Zhang, Marjorie A Withers,[...]. Cell 2011
291
32

Chromothripsis from DNA damage in micronuclei.
Cheng-Zhong Zhang, Alexander Spektor, Hauke Cornils, Joshua M Francis, Emily K Jackson, Shiwei Liu, Matthew Meyerson, David Pellman. Nature 2015
574
29

DNA breaks and chromosome pulverization from errors in mitosis.
Karen Crasta, Neil J Ganem, Regina Dagher, Alexandra B Lantermann, Elena V Ivanova, Yunfeng Pan, Luigi Nezi, Alexei Protopopov, Dipanjan Chowdhury, David Pellman. Nature 2012
751
26

Chromothripsis in healthy individuals affects multiple protein-coding genes and can result in severe congenital abnormalities in offspring.
Mirjam S de Pagter, Markus J van Roosmalen, Annette F Baas, Ivo Renkens, Karen J Duran, Ellen van Binsbergen, Masoumeh Tavakoli-Yaraki, Ron Hochstenbach, Lars T van der Veken, Edwin Cuppen,[...]. Am J Hum Genet 2015
51
47

Chromothripsis in congenital disorders and cancer: similarities and differences.
Wigard P Kloosterman, Edwin Cuppen. Curr Opin Cell Biol 2013
64
32

Criteria for inference of chromothripsis in cancer genomes.
Jan O Korbel, Peter J Campbell. Cell 2013
311
20


A germline chromothripsis event stably segregating in 11 individuals through three generations.
Birgitte Bertelsen, Lusine Nazaryan-Petersen, Wei Sun, Mana M Mehrjouy, Gangcai Xie, Wei Chen, Lena E Hjermind, Peter E M Taschner, Zeynep Tümer. Genet Med 2016
38
52

Chromothripsis and Kataegis Induced by Telomere Crisis.
John Maciejowski, Yilong Li, Nazario Bosco, Peter J Campbell, Titia de Lange. Cell 2015
347
20

Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements.
Cheng-Zhong Zhang, Mitchell L Leibowitz, David Pellman. Genes Dev 2013
161
19

Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations.
Tobias Rausch, David T W Jones, Marc Zapatka, Adrian M Stütz, Thomas Zichner, Joachim Weischenfeldt, Natalie Jäger, Marc Remke, David Shih, Paul A Northcott,[...]. Cell 2012
548
19

Punctuated evolution of prostate cancer genomes.
Sylvan C Baca, Davide Prandi, Michael S Lawrence, Juan Miguel Mosquera, Alessandro Romanel, Yotam Drier, Kyung Park, Naoki Kitabayashi, Theresa Y MacDonald, Mahmoud Ghandi,[...]. Cell 2013
773
19

The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
Claire Redin, Harrison Brand, Ryan L Collins, Tammy Kammin, Elyse Mitchell, Jennelle C Hodge, Carrie Hanscom, Vamsee Pillalamarri, Catarina M Seabra, Mary-Alice Abbott,[...]. Nat Genet 2017
138
19


The strength of combined cytogenetic and mate-pair sequencing techniques illustrated by a germline chromothripsis rearrangement involving FOXP2.
Lusine Nazaryan, Eunice G Stefanou, Claus Hansen, Nadezda Kosyakova, Mads Bak, Freddie H Sharkey, Theodora Mantziou, Anastasios D Papanastasiou, Voula Velissariou, Thomas Liehr,[...]. Eur J Hum Genet 2014
40
42

Defining the diverse spectrum of inversions, complex structural variation, and chromothripsis in the morbid human genome.
Ryan L Collins, Harrison Brand, Claire E Redin, Carrie Hanscom, Caroline Antolik, Matthew R Stone, Joseph T Glessner, Tamara Mason, Giulia Pregno, Naghmeh Dorrani,[...]. Genome Biol 2017
92
18


Next-generation sequencing strategies enable routine detection of balanced chromosome rearrangements for clinical diagnostics and genetic research.
Michael E Talkowski, Carl Ernst, Adrian Heilbut, Colby Chiang, Carrie Hanscom, Amelia Lindgren, Andrew Kirby, Shangtao Liu, Bhavana Muddukrishna, Toshiro K Ohsumi,[...]. Am J Hum Genet 2011
120
14

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
14

Chromothripsis: potential origin in gametogenesis and preimplantation cell divisions. A review.
Franck Pellestor, Vincent Gatinois, Jacques Puechberty, David Geneviève, Geneviève Lefort. Fertil Steril 2014
44
29

Integrative genomics viewer.
James T Robinson, Helga Thorvaldsdóttir, Wendy Winckler, Mitchell Guttman, Eric S Lander, Gad Getz, Jill P Mesirov. Nat Biotechnol 2011
13

Unbalanced translocations arise from diverse mutational mechanisms including chromothripsis.
Brooke Weckselblatt, Karen E Hermetz, M Katharine Rudd. Genome Res 2015
42
30

Germline Chromothripsis Driven by L1-Mediated Retrotransposition and Alu/Alu Homologous Recombination.
Lusine Nazaryan-Petersen, Birgitte Bertelsen, Mads Bak, Lars Jønson, Niels Tommerup, Dustin C Hancks, Zeynep Tümer. Hum Mutat 2016
34
38


Sequencing chromosomal abnormalities reveals neurodevelopmental loci that confer risk across diagnostic boundaries.
Michael E Talkowski, Jill A Rosenfeld, Ian Blumenthal, Vamsee Pillalamarri, Colby Chiang, Adrian Heilbut, Carl Ernst, Carrie Hanscom, Elizabeth Rossin, Amelia M Lindgren,[...]. Cell 2012
392
12

Prenatal diagnosis of chromothripsis, with nine breaks characterized by karyotyping, FISH, microarray and whole-genome sequencing.
M J Macera, A Sobrino, B Levy, V Jobanputra, V Aggarwal, A Mills, C Esteves, C Hanscom, S Pereira, V Pillalamarri,[...]. Prenat Diagn 2015
25
48

Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms.
Ankit Malhotra, Michael Lindberg, Gregory G Faust, Mitchell L Leibowitz, Royden A Clark, Ryan M Layer, Aaron R Quinlan, Ira M Hall. Genome Res 2013
123
12

LUMPY: a probabilistic framework for structural variant discovery.
Ryan M Layer, Colby Chiang, Aaron R Quinlan, Ira M Hall. Genome Biol 2014
620
12


DELLY: structural variant discovery by integrated paired-end and split-read analysis.
Tobias Rausch, Thomas Zichner, Andreas Schlattl, Adrian M Stütz, Vladimir Benes, Jan O Korbel. Bioinformatics 2012
916
12

Mechanisms underlying structural variant formation in genomic disorders.
Claudia M B Carvalho, James R Lupski. Nat Rev Genet 2016
292
12

Selective Y centromere inactivation triggers chromosome shattering in micronuclei and repair by non-homologous end joining.
Peter Ly, Levi S Teitz, Dong H Kim, Ofer Shoshani, Helen Skaletsky, Daniele Fachinetti, David C Page, Don W Cleveland. Nat Cell Biol 2017
130
12

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
11

The architecture and evolution of cancer neochromosomes.
Dale W Garsed, Owen J Marshall, Vincent D A Corbin, Arthur Hsu, Leon Di Stefano, Jan Schröder, Jason Li, Zhi-Ping Feng, Bo W Kim, Mark Kowarsky,[...]. Cancer Cell 2014
108
11

Cryptic and complex chromosomal aberrations in early-onset neuropsychiatric disorders.
Harrison Brand, Vamsee Pillalamarri, Ryan L Collins, Stacey Eggert, Colm O'Dushlaine, Ellen B Braaten, Matthew R Stone, Kimberly Chambert, Nathan D Doty, Carrie Hanscom,[...]. Am J Hum Genet 2014
33
33

Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes.
Jan J Molenaar, Jan Koster, Danny A Zwijnenburg, Peter van Sluis, Linda J Valentijn, Ida van der Ploeg, Mohamed Hamdi, Johan van Nes, Bart A Westerman, Jennemiek van Arkel,[...]. Nature 2012
583
11


A cell-based model system links chromothripsis with hyperploidy.
Balca R Mardin, Alexandros P Drainas, Sebastian M Waszak, Joachim Weischenfeldt, Mayumi Isokane, Adrian M Stütz, Benjamin Raeder, Theocharis Efthymiopoulos, Christopher Buccitelli, Maia Segura-Wang,[...]. Mol Syst Biol 2015
81
13

Human Structural Variation: Mechanisms of Chromosome Rearrangements.
Brooke Weckselblatt, M Katharine Rudd. Trends Genet 2015
106
11


Structural variation in the human genome and its role in disease.
Paweł Stankiewicz, James R Lupski. Annu Rev Med 2010
690
10

Mapping copy number variation by population-scale genome sequencing.
Ryan E Mills, Klaudia Walter, Chip Stewart, Robert E Handsaker, Ken Chen, Can Alkan, Alexej Abyzov, Seungtai Chris Yoon, Kai Ye, R Keira Cheetham,[...]. Nature 2011
728
10

Inverted genomic segments and complex triplication rearrangements are mediated by inverted repeats in the human genome.
Claudia M B Carvalho, Melissa B Ramocki, Davut Pehlivan, Luis M Franco, Claudia Gonzaga-Jauregui, Ping Fang, Alanna McCall, Eniko Karman Pivnick, Stacy Hines-Dowell, Laurie H Seaver,[...]. Nat Genet 2011
130
10

Resolving the complexity of the human genome using single-molecule sequencing.
Mark J P Chaisson, John Huddleston, Megan Y Dennis, Peter H Sudmant, Maika Malig, Fereydoun Hormozdiari, Francesca Antonacci, Urvashi Surti, Richard Sandstrom, Matthew Boitano,[...]. Nature 2015
407
10

Chromothriptic cure of WHIM syndrome.
David H McDermott, Ji-Liang Gao, Qian Liu, Marie Siwicki, Craig Martens, Paejonette Jacobs, Daniel Velez, Erin Yim, Christine R Bryke, Nancy Hsu,[...]. Cell 2015
110
10

A Distinct Class of Chromoanagenesis Events Characterized by Focal Copy Number Gains.
Heleen Masset, Matthew S Hestand, Hilde Van Esch, Pascale Kleinfinger, Julie Plaisancié, Alexandra Afenjar, Romain Molignier, Caroline Schluth-Bolard, Damien Sanlaville, Joris R Vermeesch. Hum Mutat 2016
22
45

Very short DNA segments can be detected and handled by the repair machinery during germline chromothriptic chromosome reassembly.
Zuzana Slamova, Lusine Nazaryan-Petersen, Mana M Mehrjouy, Jana Drabova, Miroslava Hancarova, Tatana Marikova, Drahuse Novotna, Marketa Vlckova, Zdenka Vlckova, Mads Bak,[...]. Hum Mutat 2018
15
66


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.