A citation-based method for searching scientific literature

Eimear E Kenny, Itsik Pe'er, Amir Karban, Laurie Ozelius, Adele A Mitchell, Sok Meng Ng, Monica Erazo, Harry Ostrer, Clara Abraham, Maria T Abreu, Gil Atzmon, Nir Barzilai, Steven R Brant, Susan Bressman, Edward R Burns, Yehuda Chowers, Lorraine N Clark, Ariel Darvasi, Dana Doheny, Richard H Duerr, Rami Eliakim, Nir Giladi, Peter K Gregersen, Hakon Hakonarson, Michelle R Jones, Karen Marder, Dermot P B McGovern, Jennifer Mulle, Avi Orr-Urtreger, Deborah D Proctor, Ann Pulver, Jerome I Rotter, Mark S Silverberg, Thomas Ullman, Stephen T Warren, Matti Waterman, Wei Zhang, Aviv Bergman, Lloyd Mayer, Seymour Katz, Robert J Desnick, Judy H Cho, Inga Peter. PLoS Genet 2012
Times Cited: 99







List of co-cited articles
700 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
40

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
Andre Franke, Dermot P B McGovern, Jeffrey C Barrett, Kai Wang, Graham L Radford-Smith, Tariq Ahmad, Charlie W Lees, Tobias Balschun, James Lee, Rebecca Roberts,[...]. Nat Genet 2010
33

Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.
Jeffrey C Barrett, Sarah Hansoul, Dan L Nicolae, Judy H Cho, Richard H Duerr, John D Rioux, Steven R Brant, Mark S Silverberg, Kent D Taylor, M Michael Barmada,[...]. Nat Genet 2008
25

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
25

Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
Carl A Anderson, Gabrielle Boucher, Charlie W Lees, Andre Franke, Mauro D'Amato, Kent D Taylor, James C Lee, Philippe Goyette, Marcin Imielinski, Anna Latiano,[...]. Nat Genet 2011
954
24

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Jimmy Z Liu, Suzanne van Sommeren, Hailiang Huang, Siew C Ng, Rudi Alberts, Atsushi Takahashi, Stephan Ripke, James C Lee, Luke Jostins, Tejas Shah,[...]. Nat Genet 2015
21


Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.
John D Rioux, Ramnik J Xavier, Kent D Taylor, Mark S Silverberg, Philippe Goyette, Alan Huett, Todd Green, Petric Kuballa, M Michael Barmada, Lisa Wu Datta,[...]. Nat Genet 2007
19

A genome-wide association study identifies IL23R as an inflammatory bowel disease gene.
Richard H Duerr, Kent D Taylor, Steven R Brant, John D Rioux, Mark S Silverberg, Mark J Daly, A Hillary Steinhart, Clara Abraham, Miguel Regueiro, Anne Griffiths,[...]. Science 2006
16

Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.
Miles Parkes, Jeffrey C Barrett, Natalie J Prescott, Mark Tremelling, Carl A Anderson, Sheila A Fisher, Roland G Roberts, Elaine R Nimmo, Fraser R Cummings, Dianne Soars,[...]. Nat Genet 2007
888
15

Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease.
Manuel A Rivas, Mélissa Beaudoin, Agnes Gardet, Christine Stevens, Yashoda Sharma, Clarence K Zhang, Gabrielle Boucher, Stephan Ripke, David Ellinghaus, Noel Burtt,[...]. Nat Genet 2011
535
14

A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.
Keiko Yamazaki, Junji Umeno, Atsushi Takahashi, Atsushi Hirano, Todd Andrew Johnson, Natsuhiko Kumasaka, Takashi Morizono, Naoya Hosono, Takaaki Kawaguchi, Masakazu Takazoe,[...]. Gastroenterology 2013
93
15

Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4.
Cécile Libioulle, Edouard Louis, Sarah Hansoul, Cynthia Sandor, Frédéric Farnir, Denis Franchimont, Séverine Vermeire, Olivier Dewit, Martine de Vos, Anna Dixon,[...]. PLoS Genet 2007
432
13

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease.
Y Ogura, D K Bonen, N Inohara, D L Nicolae, F F Chen, R Ramos, H Britton, T Moran, R Karaliuskas, R H Duerr,[...]. Nature 2001
13

Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.
Suk-Kyun Yang, Myunghee Hong, Wanting Zhao, Yusun Jung, Jiwon Baek, Naeimeh Tayebi, Kyung Mo Kim, Byong Duk Ye, Kyung-Jo Kim, Sang Hyoung Park,[...]. Gut 2014
125
13

Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease.
J P Hugot, M Chamaillard, H Zouali, S Lesage, J P Cézard, J Belaiche, S Almer, C Tysk, C A O'Morain, M Gassull,[...]. Nature 2001
12

Genome-wide association identifies multiple ulcerative colitis susceptibility loci.
Dermot P B McGovern, Agnès Gardet, Leif Törkvist, Philippe Goyette, Jonah Essers, Kent D Taylor, Benjamin M Neale, Rick T H Ong, Caroline Lagacé, Chun Li,[...]. Nat Genet 2010
472
11

Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.
Jeffrey C Barrett, James C Lee, Charles W Lees, Natalie J Prescott, Carl A Anderson, Anne Phillips, Emma Wesley, Kirstie Parnell, Hu Zhang, Hazel Drummond,[...]. Nat Genet 2009
386
11

A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1.
Jochen Hampe, Andre Franke, Philip Rosenstiel, Andreas Till, Markus Teuber, Klaus Huse, Mario Albrecht, Gabriele Mayr, Francisco M De La Vega, Jason Briggs,[...]. Nat Genet 2007
11

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
10

A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.
Antonio Julià, Eugeni Domènech, Elena Ricart, Raül Tortosa, Valle García-Sánchez, Javier P Gisbert, Pilar Nos Mateu, Ana Gutiérrez, Fernando Gomollón, Juan Luís Mendoza,[...]. Gut 2013
34
29

Finding the missing heritability of complex diseases.
Teri A Manolio, Francis S Collins, Nancy J Cox, David B Goldstein, Lucia A Hindorff, David J Hunter, Mark I McCarthy, Erin M Ramos, Lon R Cardon, Aravinda Chakravarti,[...]. Nature 2009
10

Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.
Katrina M de Lange, Loukas Moutsianas, James C Lee, Christopher A Lamb, Yang Luo, Nicholas A Kennedy, Luke Jostins, Daniel L Rice, Javier Gutierrez-Achury, Sun-Gou Ji,[...]. Nat Genet 2017
479
10

Genetics and pathogenesis of inflammatory bowel disease.
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
9

Principal components analysis corrects for stratification in genome-wide association studies.
Alkes L Price, Nick J Patterson, Robert M Plenge, Michael E Weinblatt, Nancy A Shadick, David Reich. Nat Genet 2006
9

Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.
Subra Kugathasan, Robert N Baldassano, Jonathan P Bradfield, Patrick M A Sleiman, Marcin Imielinski, Stephen L Guthery, Salvatore Cucchiara, Cecilia E Kim, Edward C Frackelton, Kiran Annaiah,[...]. Nat Genet 2008
246
9

Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.
David M Evans, Chris C A Spencer, Jennifer J Pointon, Zhan Su, David Harvey, Grazyna Kochan, Udo Oppermann, Alexander Dilthey, Matti Pirinen, Millicent A Stone,[...]. Nat Genet 2011
614
9

Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.
Jeffrey C Barrett, David G Clayton, Patrick Concannon, Beena Akolkar, Jason D Cooper, Henry A Erlich, Cécile Julier, Grant Morahan, Jørn Nerup, Concepcion Nierras,[...]. Nat Genet 2009
8


Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.
John D Reveille, Anne-Marie Sims, Patrick Danoy, David M Evans, Paul Leo, Jennifer J Pointon, Rui Jin, Xiaodong Zhou, Linda A Bradbury, Louise H Appleton,[...]. Nat Genet 2010
464
8

LRRK2 G2019S as a cause of Parkinson's disease in Ashkenazi Jews.
Laurie J Ozelius, Geetha Senthil, Rachel Saunders-Pullman, Erin Ohmann, Amanda Deligtisch, Michele Tagliati, Ann L Hunt, Christine Klein, Brian Henick, Susan M Hailpern,[...]. N Engl J Med 2006
502
8

Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins.
Shai Carmi, Ken Y Hui, Ethan Kochav, Xinmin Liu, James Xue, Fillan Grady, Saurav Guha, Kinnari Upadhyay, Dan Ben-Avraham, Semanti Mukherjee,[...]. Nat Commun 2014
96
8


A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.
Amy Strange, Francesca Capon, Chris C A Spencer, Jo Knight, Michael E Weale, Michael H Allen, Anne Barton, Gavin Band, Céline Bellenguez, Judith G M Bergboer,[...]. Nat Genet 2010
726
7

Increasing incidence and prevalence of the inflammatory bowel diseases with time, based on systematic review.
Natalie A Molodecky, Ing Shian Soon, Doreen M Rabi, William A Ghali, Mollie Ferris, Greg Chernoff, Eric I Benchimol, Remo Panaccione, Subrata Ghosh, Herman W Barkema,[...]. Gastroenterology 2012
7

Abraham's children in the genome era: major Jewish diaspora populations comprise distinct genetic clusters with shared Middle Eastern Ancestry.
Gil Atzmon, Li Hao, Itsik Pe'er, Christopher Velez, Alexander Pearlman, Pier Francesco Palamara, Bernice Morrow, Eitan Friedman, Carole Oddoux, Edward Burns,[...]. Am J Hum Genet 2010
144
7

Evaluation of 22 genetic variants with Crohn's disease risk in the Ashkenazi Jewish population: a case-control study.
Inga Peter, Adele A Mitchell, Laurie Ozelius, Monica Erazo, Jianzhong Hu, Dana Doheny, Maria T Abreu, Daniel H Present, Thomas Ullman, Keith Benkov,[...]. BMC Med Genet 2011
41
17

Genetic insights into common pathways and complex relationships among immune-mediated diseases.
Miles Parkes, Adrian Cortes, David A van Heel, Matthew A Brown. Nat Rev Genet 2013
354
7

Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.
Mark S Silverberg, Judy H Cho, John D Rioux, Dermot P B McGovern, Jing Wu, Vito Annese, Jean-Paul Achkar, Philippe Goyette, Regan Scott, Wei Xu,[...]. Nat Genet 2009
309
7

Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.
Eli A Stahl, Soumya Raychaudhuri, Elaine F Remmers, Gang Xie, Stephen Eyre, Brian P Thomson, Yonghong Li, Fina A S Kurreeman, Alexandra Zhernakova, Anne Hinks,[...]. Nat Genet 2010
918
7

Analysis of protein-coding genetic variation in 60,706 humans.
Monkol Lek, Konrad J Karczewski, Eric V Minikel, Kaitlin E Samocha, Eric Banks, Timothy Fennell, Anne H O'Donnell-Luria, James S Ware, Andrew J Hill, Beryl B Cummings,[...]. Nature 2016
7

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
7

Recent insights into the genetics of inflammatory bowel disease.
Judy H Cho, Steven R Brant. Gastroenterology 2011
289
6

Biological, clinical and population relevance of 95 loci for blood lipids.
Tanya M Teslovich, Kiran Musunuru, Albert V Smith, Andrew C Edmondson, Ioannis M Stylianou, Masahiro Koseki, James P Pirruccello, Samuli Ripatti, Daniel I Chasman, Cristen J Willer,[...]. Nature 2010
6

Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.
Dermot P B McGovern, Michelle R Jones, Kent D Taylor, Kristin Marciante, Xiaofei Yan, Marla Dubinsky, Andy Ippoliti, Eric Vasiliauskas, Dror Berel, Carrie Derkowski,[...]. Hum Mol Genet 2010
247
6

Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
Stephen Sawcer, Garrett Hellenthal, Matti Pirinen, Chris C A Spencer, Nikolaos A Patsopoulos, Loukas Moutsianas, Alexander Dilthey, Zhan Su, Colin Freeman, Sarah E Hunt,[...]. Nature 2011
6

Genome-wide association study for Crohn's disease in the Quebec Founder Population identifies multiple validated disease loci.
John V Raelson, Randall D Little, Andreas Ruether, Hélène Fournier, Bruno Paquin, Paul Van Eerdewegh, W E C Bradley, Pascal Croteau, Quynh Nguyen-Huu, Jonathan Segal,[...]. Proc Natl Acad Sci U S A 2007
164
6


A map of human genome variation from population-scale sequencing.
Gonçalo R Abecasis, David Altshuler, Adam Auton, Lisa D Brooks, Richard M Durbin, Richard A Gibbs, Matt E Hurles, Gil A McVean. Nature 2010
6

A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells.
Ken Cadwell, John Y Liu, Sarah L Brown, Hiroyuki Miyoshi, Joy Loh, Jochen K Lennerz, Chieko Kishi, Wumesh Kc, Javier A Carrero, Steven Hunt,[...]. Nature 2008
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.