A citation-based method for searching scientific literature

Yasmin M Ramdzan, Saskia Polling, Cheryl P Z Chia, Ivan H W Ng, Angelique R Ormsby, Nathan P Croft, Anthony W Purcell, Marie A Bogoyevitch, Dominic C H Ng, Paul A Gleeson, Danny M Hatters. Nat Methods 2012
Times Cited: 76







List of co-cited articles
548 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Misfolded proteins partition between two distinct quality control compartments.
Daniel Kaganovich, Ron Kopito, Judith Frydman. Nature 2008
647
26

Inclusion body formation reduces levels of mutant huntingtin and the risk of neuronal death.
Montserrat Arrasate, Siddhartha Mitra, Erik S Schweitzer, Mark R Segal, Steven Finkbeiner. Nature 2004
23

Aggregation of huntingtin in neuronal intranuclear inclusions and dystrophic neurites in brain.
M DiFiglia, E Sapp, K O Chase, S W Davies, G P Bates, J P Vonsattel, N Aronin. Science 1997
18

Firefly luciferase mutants as sensors of proteome stress.
Rajat Gupta, Prasad Kasturi, Andreas Bracher, Christian Loew, Min Zheng, Adriana Villella, Dan Garza, F Ulrich Hartl, Swasti Raychaudhuri. Nat Methods 2011
119
18

Tracking mutant huntingtin aggregation kinetics in cells reveals three major populations that include an invariant oligomer pool.
Maya A Olshina, Lauren M Angley, Yasmin M Ramdzan, Jinwei Tang, Michael F Bailey, Andrew F Hill, Danny M Hatters. J Biol Chem 2010
91
15

Self-assembly of polyglutamine-containing huntingtin fragments into amyloid-like fibrils: implications for Huntington's disease pathology.
E Scherzinger, A Sittler, K Schweiger, V Heiser, R Lurz, R Hasenbank, G P Bates, H Lehrach, E E Wanker. Proc Natl Acad Sci U S A 1999
526
15

Aggresomes: a cellular response to misfolded proteins.
J A Johnston, C L Ward, R R Kopito. J Cell Biol 1998
14

Progressive disruption of cellular protein folding in models of polyglutamine diseases.
Tali Gidalevitz, Anat Ben-Zvi, Kim H Ho, Heather R Brignull, Richard I Morimoto. Science 2006
458
13

Adapting proteostasis for disease intervention.
William E Balch, Richard I Morimoto, Andrew Dillin, Jeffery W Kelly. Science 2008
13

Conformation sensors that distinguish monomeric proteins from oligomers in live cells.
Yasmin M Ramdzan, Rebecca M Nisbet, Jason Miller, Steven Finkbeiner, Andrew F Hill, Danny M Hatters. Chem Biol 2010
28
32

Protein misfolding, functional amyloid, and human disease.
Fabrizio Chiti, Christopher M Dobson. Annu Rev Biochem 2006
11



Huntingtin-encoded polyglutamine expansions form amyloid-like protein aggregates in vitro and in vivo.
E Scherzinger, R Lurz, M Turmaine, L Mangiarini, B Hollenbach, R Hasenbank, G P Bates, S W Davies, H Lehrach, E E Wanker. Cell 1997
10

Formation of neuronal intranuclear inclusions underlies the neurological dysfunction in mice transgenic for the HD mutation.
S W Davies, M Turmaine, B A Cozens, M DiFiglia, A H Sharp, C A Ross, E Scherzinger, E E Wanker, L Mangiarini, G P Bates. Cell 1997
10

Monitoring protein stability and aggregation in vivo by real-time fluorescent labeling.
Zoya Ignatova, Lila M Gierasch. Proc Natl Acad Sci U S A 2004
180
10

Biological and chemical approaches to diseases of proteostasis deficiency.
Evan T Powers, Richard I Morimoto, Andrew Dillin, Jeffery W Kelly, William E Balch. Annu Rev Biochem 2009
749
10

A biosensor-based framework to measure latent proteostasis capacity.
Rebecca J Wood, Angelique R Ormsby, Mona Radwan, Dezerae Cox, Abhishek Sharma, Tobias Vöpel, Simon Ebbinghaus, Mikael Oliveberg, Gavin E Reid, Alex Dickson,[...]. Nat Commun 2018
21
38

Detection of polyglutamine protein oligomers in cells by fluorescence correlation spectroscopy.
Yasuo Takahashi, Yuma Okamoto, H Akiko Popiel, Nobuhiro Fujikake, Tatsushi Toda, Masataka Kinjo, Yoshitaka Nagai. J Biol Chem 2007
81
9

Proteostasis of polyglutamine varies among neurons and predicts neurodegeneration.
Andrey S Tsvetkov, Montserrat Arrasate, Sami Barmada, D Michael Ando, Punita Sharma, Benjamin A Shaby, Steven Finkbeiner. Nat Chem Biol 2013
119
9

A platform to view huntingtin exon 1 aggregation flux in the cell reveals divergent influences from chaperones hsp40 and hsp70.
Angelique R Ormsby, Yasmin M Ramdzan, Yee-Foong Mok, Kristijan D Jovanoski, Danny M Hatters. J Biol Chem 2013
20
35

Quantitative and spatio-temporal features of protein aggregation in Escherichia coli and consequences on protein quality control and cellular ageing.
Juliane Winkler, Anja Seybert, Lars König, Sabine Pruggnaller, Uta Haselmann, Victor Sourjik, Matthias Weiss, Achilleas S Frangakis, Axel Mogk, Bernd Bukau. EMBO J 2010
185
9

Conformational analysis of misfolded protein aggregation by FRET and live-cell imaging techniques.
Akira Kitamura, Kazuhiro Nagata, Masataka Kinjo. Int J Mol Sci 2015
17
41

Rapid flow cytometric measurement of protein inclusions and nuclear trafficking.
D R Whiten, R San Gil, L McAlary, J J Yerbury, H Ecroyd, M R Wilson. Sci Rep 2016
23
30

Soluble polyglutamine oligomers formed prior to inclusion body formation are cytotoxic.
Toshiaki Takahashi, Shinya Kikuchi, Shinichi Katada, Yoshitaka Nagai, Masatoyo Nishizawa, Osamu Onodera. Hum Mol Genet 2008
167
7

Cellular strategies for controlling protein aggregation.
Jens Tyedmers, Axel Mogk, Bernd Bukau. Nat Rev Mol Cell Biol 2010
563
7

Protein aggregation and neurodegenerative disease.
Christopher A Ross, Michelle A Poirier. Nat Med 2004
7


Molecular chaperones in protein folding and proteostasis.
F Ulrich Hartl, Andreas Bracher, Manajit Hayer-Hartl. Nature 2011
7

PolyQ proteins interfere with nuclear degradation of cytosolic proteins by sequestering the Sis1p chaperone.
Sae-Hun Park, Yury Kukushkin, Rajat Gupta, Taotao Chen, Ayano Konagai, Mark S Hipp, Manajit Hayer-Hartl, F Ulrich Hartl. Cell 2013
236
7

Misfolded polyglutamine, polyalanine, and superoxide dismutase 1 aggregate via distinct pathways in the cell.
Saskia Polling, Yee-Foong Mok, Yasmin M Ramdzan, Bradley J Turner, Justin J Yerbury, Andrew F Hill, Danny M Hatters. J Biol Chem 2014
27
22

Proteostasis impairment in protein-misfolding and -aggregation diseases.
Mark S Hipp, Sae-Hun Park, F Ulrich Hartl. Trends Cell Biol 2014
373
7

The amyloid state and its association with protein misfolding diseases.
Tuomas P J Knowles, Michele Vendruscolo, Christopher M Dobson. Nat Rev Mol Cell Biol 2014
7

Fluorescence Turn-On Folding Sensor To Monitor Proteome Stress in Live Cells.
Yu Liu, Xin Zhang, Wentao Chen, Yun Lei Tan, Jeffery W Kelly. J Am Chem Soc 2015
25
24

HaloTag: a novel protein labeling technology for cell imaging and protein analysis.
Georgyi V Los, Lance P Encell, Mark G McDougall, Danette D Hartzell, Natasha Karassina, Chad Zimprich, Monika G Wood, Randy Learish, Rachel Friedman Ohana, Marjeta Urh,[...]. ACS Chem Biol 2008
7

AgHalo: A Facile Fluorogenic Sensor to Detect Drug-Induced Proteome Stress.
Yu Liu, Matthew Fares, Noah P Dunham, Zi Gao, Kun Miao, Xueyuan Jiang, Samuel S Bollinger, Amie K Boal, Xin Zhang. Angew Chem Int Ed Engl 2017
46
13

Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases.
Monica Bucciantini, Elisa Giannoni, Fabrizio Chiti, Fabiana Baroni, Lucia Formigli, Jesús Zurdo, Niccolò Taddei, Giampietro Ramponi, Christopher M Dobson, Massimo Stefani. Nature 2002
6


Doublet discrimination in DNA cell-cycle analysis.
R P Wersto, F J Chrest, J F Leary, C Morris, M A Stetler-Stevenson, E Gabrielson. Cytometry 2001
122
6

Compartmentalization of superoxide dismutase 1 (SOD1G93A) aggregates determines their toxicity.
Sarah J Weisberg, Roman Lyakhovetsky, Ayelet-chen Werdiger, Aaron D Gitler, Yoav Soen, Daniel Kaganovich. Proc Natl Acad Sci U S A 2012
78
6

Aggregation and motor neuron toxicity of an ALS-linked SOD1 mutant independent from wild-type SOD1.
L I Bruijn, M K Houseweart, S Kato, K L Anderson, S D Anderson, E Ohama, A G Reaume, R W Scott, D W Cleveland. Science 1998
883
6

Opinion: What is the role of protein aggregation in neurodegeneration?
Christopher A Ross, Michelle A Poirier. Nat Rev Mol Cell Biol 2005
445
6

Amyloid-like aggregates sequester numerous metastable proteins with essential cellular functions.
Heidi Olzscha, Sonya M Schermann, Andreas C Woerner, Stefan Pinkert, Michael H Hecht, Gian G Tartaglia, Michele Vendruscolo, Manajit Hayer-Hartl, F Ulrich Hartl, R Martin Vabulas. Cell 2011
453
6

The Cation-π Interaction Enables a Halo-Tag Fluorogenic Probe for Fast No-Wash Live Cell Imaging and Gel-Free Protein Quantification.
Yu Liu, Kun Miao, Noah P Dunham, Hongbin Liu, Matthew Fares, Amie K Boal, Xiaosong Li, Xin Zhang. Biochemistry 2017
35
14

Self-Assembling NanoLuc Luciferase Fragments as Probes for Protein Aggregation in Living Cells.
Jia Zhao, Travis J Nelson, Quyen Vu, Tiffany Truong, Cliff I Stains. ACS Chem Biol 2016
31
16

Rapid protein-folding assay using green fluorescent protein.
G S Waldo, B M Standish, J Berendzen, T C Terwilliger. Nat Biotechnol 1999
654
6

Monitoring protein misfolding by site-specific labeling of proteins in vivo.
Tzung-yang Hsieh, Nadinath B Nillegoda, Jens Tyedmers, Bernd Bukau, Axel Mogk, Günter Kramer. PLoS One 2014
15
33

Highly sensitive amyloid detection enabled by thioflavin T dimers.
Luoheng Qin, Julian Vastl, Jianmin Gao. Mol Biosyst 2010
28
17

Huntingtin Inclusions Trigger Cellular Quiescence, Deactivate Apoptosis, and Lead to Delayed Necrosis.
Yasmin M Ramdzan, Mikhail M Trubetskov, Angelique R Ormsby, Estella A Newcombe, Xiaojing Sui, Mark J Tobin, Marie N Bongiovanni, Sally L Gras, Grant Dewson, Jason M L Miller,[...]. Cell Rep 2017
63
7



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.