A citation-based method for searching scientific literature

Heike Berndt, Christiane Harnisch, Christiane Rammelt, Nadine Stöhr, Anne Zirkel, Juliane C Dohm, Heinz Himmelbauer, Joao-Paulo Tavanez, Stefan Hüttelmaier, Elmar Wahle. RNA 2012
Times Cited: 103







List of co-cited articles
1441 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
656
28

Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs.
Mayuko Yoda, Daniel Cifuentes, Natsuko Izumi, Yuriko Sakaguchi, Tsutomu Suzuki, Antonio J Giraldez, Yukihide Tomari. Cell Rep 2013
98
28

Poly(A)-specific ribonuclease deficiency impacts telomere biology and causes dyskeratosis congenita.
Hemanth Tummala, Amanda Walne, Laura Collopy, Shirleny Cardoso, Josu de la Fuente, Sarah Lawson, James Powell, Nicola Cooper, Alison Foster, Shehla Mohammed,[...]. J Clin Invest 2015
101
28

Poly(A)-specific ribonuclease (PARN) mediates 3'-end maturation of the telomerase RNA component.
Diane H Moon, Matthew Segal, Baris Boyraz, Eva Guinan, Inga Hofmann, Patrick Cahan, Albert K Tai, Suneet Agarwal. Nat Genet 2015
98
28

Multifunctional deadenylase complexes diversify mRNA control.
Aaron C Goldstrohm, Marvin Wickens. Nat Rev Mol Cell Biol 2008
261
26

A Polyadenylation-Dependent 3' End Maturation Pathway Is Required for the Synthesis of the Human Telomerase RNA.
Duy Nguyen, Valérie Grenier St-Sauveur, Danny Bergeron, Fabien Dupuis-Sandoval, Michelle S Scott, François Bachand. Cell Rep 2015
68
38

Exome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening.
Bridget D Stuart, Jungmin Choi, Samir Zaidi, Chao Xing, Brody Holohan, Rui Chen, Mihwa Choi, Pooja Dharwadkar, Fernando Torres, Carlos E Girod,[...]. Nat Genet 2015
230
25

Inhibition of telomerase RNA decay rescues telomerase deficiency caused by dyskerin or PARN defects.
Siddharth Shukla, Jens C Schmidt, Katherine C Goldfarb, Thomas R Cech, Roy Parker. Nat Struct Mol Biol 2016
61
40

Interaction profiling identifies the human nuclear exosome targeting complex.
Michal Lubas, Marianne S Christensen, Maiken S Kristiansen, Michal Domanski, Lasse G Falkenby, Søren Lykke-Andersen, Jens S Andersen, Andrzej Dziembowski, Torben Heick Jensen. Mol Cell 2011
248
24

PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif.
Christiane Rammelt, Biter Bilen, Mihaela Zavolan, Walter Keller. RNA 2011
54
44

Human Telomerase RNA Processing and Quality Control.
Chi-Kang Tseng, Hui-Fang Wang, Allison M Burns, Morgan R Schroeder, Martina Gaspari, Peter Baumann. Cell Rep 2015
75
30

Poly(A)-specific ribonuclease (PARN): an allosterically regulated, processive and mRNA cap-interacting deadenylase.
Anders Virtanen, Niklas Henriksson, Per Nilsson, Mikael Nissbeck. Crit Rev Biochem Mol Biol 2013
44
50

The deadenylating nuclease (DAN) is involved in poly(A) tail removal during the meiotic maturation of Xenopus oocytes.
C G Körner, M Wormington, M Muckenthaler, S Schneider, E Dehlin, E Wahle. EMBO J 1998
194
20


A new yeast poly(A) polymerase complex involved in RNA quality control.
Stepánka Vanácová, Jeannette Wolf, Georges Martin, Diana Blank, Sabine Dettwiler, Arno Friedlein, Hanno Langen, Gérard Keith, Walter Keller. PLoS Biol 2005
447
19

Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells.
Natalia Shcherbik, Minshi Wang, Yevgeniya R Lapik, Leena Srivastava, Dimitri G Pestov. EMBO Rep 2010
79
24

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
Françoise Wyers, Mathieu Rougemaille, Gwenaël Badis, Jean-Claude Rousselle, Marie-Elisabeth Dufour, Jocelyne Boulay, Béatrice Régnault, Frédéric Devaux, Abdelkader Namane, Bertrand Séraphin,[...]. Cell 2005
642
19

Bone marrow failure and developmental delay caused by mutations in poly(A)-specific ribonuclease (PARN).
Santhosh Dhanraj, Sethu Madhava Rao Gunja, Adam P Deveau, Mikael Nissbeck, Boonchai Boonyawat, Andrew J Coombs, Alessandra Renieri, Mafalda Mucciolo, Annabella Marozza, Sabrina Buoni,[...]. J Med Genet 2015
51
37

Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover.
Akio Yamashita, Tsung-Cheng Chang, Yukiko Yamashita, Wenmiao Zhu, Zhenping Zhong, Chyi-Ying A Chen, Ann-Bin Shyu. Nat Struct Mol Biol 2005
304
18


The PARN deadenylase targets a discrete set of mRNAs for decay and regulates cell motility in mouse myoblasts.
Jerome E Lee, Ju Youn Lee, Jarrett Trembly, Jeffrey Wilusz, Bin Tian, Carol J Wilusz. PLoS Genet 2012
41
39

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.
Joost Boele, Helena Persson, Jay W Shin, Yuri Ishizu, Inga S Newie, Rolf Søkilde, Shannon M Hawkins, Cristian Coarfa, Kazuhiro Ikeda, Ken-ichi Takayama,[...]. Proc Natl Acad Sci U S A 2014
85
18



CPEB and two poly(A) polymerases control miR-122 stability and p53 mRNA translation.
David M Burns, Andrea D'Ambrogio, Stephanie Nottrott, Joel D Richter. Nature 2011
134
15

Poly(A)-specific ribonuclease is a nuclear ribosome biogenesis factor involved in human 18S rRNA maturation.
Christian Montellese, Nathalie Montel-Lehry, Anthony K Henras, Ulrike Kutay, Pierre-Emmanuel Gleizes, Marie-Françoise O'Donohue. Nucleic Acids Res 2017
27
55

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.
Takayuki Katoh, Yuriko Sakaguchi, Kenjyo Miyauchi, Takeo Suzuki, Shin-Ichi Kashiwabara, Tadashi Baba, Tsutomu Suzuki. Genes Dev 2009
303
14

TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation.
Inha Heo, Chirlmin Joo, Young-Kook Kim, Minju Ha, Mi-Jeong Yoon, Jun Cho, Kyu-Hyeon Yeom, Jinju Han, V Narry Kim. Cell 2009
557
14

Poly(A)-specific ribonuclease regulates the processing of small-subunit rRNAs in human cells.
Hideaki Ishikawa, Harunori Yoshikawa, Keiichi Izumikawa, Yutaka Miura, Masato Taoka, Yuko Nobe, Yoshio Yamauchi, Hiroshi Nakayama, Richard J Simpson, Toshiaki Isobe,[...]. Nucleic Acids Res 2017
22
63

PARN Modulates Y RNA Stability and Its 3'-End Formation.
Siddharth Shukla, Roy Parker. Mol Cell Biol 2017
20
70

Nuclear deadenylation/polyadenylation factors regulate 3' processing in response to DNA damage.
Murat A Cevher, Xiaokan Zhang, Sully Fernandez, Sergey Kim, Jorge Baquero, Per Nilsson, Sean Lee, Anders Virtanen, Frida E Kleiman. EMBO J 2010
53
24


Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs.
Inha Heo, Minju Ha, Jaechul Lim, Mi-Jeong Yoon, Jong-Eun Park, S Chul Kwon, Hyeshik Chang, V Narry Kim. Cell 2012
190
13

Recognition of adenosine residues by the active site of poly(A)-specific ribonuclease.
Niklas Henriksson, Per Nilsson, Mousheng Wu, Haiwei Song, Anders Virtanen. J Biol Chem 2010
29
44

Modulation of poly(A)-specific ribonuclease (PARN): current knowledge and perspectives.
N A A Balatsos, P Maragozidis, D Anastasakis, C Stathopoulos. Curr Med Chem 2012
20
65

Destabilization of microRNAs in human cells by 3' deadenylation mediated by PARN and CUGBP1.
Takayuki Katoh, Hiroaki Hojo, Tsutomu Suzuki. Nucleic Acids Res 2015
44
29

Structural insight into poly(A) binding and catalytic mechanism of human PARN.
Mousheng Wu, Michael Reuter, Hauke Lilie, Yuying Liu, Elmar Wahle, Haiwei Song. EMBO J 2005
82
14

Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells.
John P Hagan, Elena Piskounova, Richard I Gregory. Nat Struct Mol Biol 2009
379
12

Zcchc11-dependent uridylation of microRNA directs cytokine expression.
Matthew R Jones, Lee J Quinton, Matthew T Blahna, Joel R Neilson, Suneng Fu, Alexander R Ivanov, Dieter A Wolf, Joseph P Mizgerd. Nat Cell Biol 2009
209
12

Efficient RNA polyuridylation by noncanonical poly(A) polymerases.
Olivia S Rissland, Andrea Mikulasova, Chris J Norbury. Mol Cell Biol 2007
118
12

The highways and byways of mRNA decay.
Nicole L Garneau, Jeffrey Wilusz, Carol J Wilusz. Nat Rev Mol Cell Biol 2007
842
12

TAIL-seq: genome-wide determination of poly(A) tail length and 3' end modifications.
Hyeshik Chang, Jaechul Lim, Minju Ha, V Narry Kim. Mol Cell 2014
202
12

Positive and negative feedback loops in the p53 and mRNA 3' processing pathways.
Emral Devany, Xiaokan Zhang, Ji Yeon Park, Bin Tian, Frida Esther Kleiman. Proc Natl Acad Sci U S A 2013
33
36

Uridylation by TUT4 and TUT7 marks mRNA for degradation.
Jaechul Lim, Minju Ha, Hyeshik Chang, S Chul Kwon, Dhirendra K Simanshu, Dinshaw J Patel, V Narry Kim. Cell 2014
133
12

Molecular cloning and characterization of a novel isoform of the non-canonical poly(A) polymerase PAPD7.
Koichi Ogami, Rihe Cho, Shin-ichi Hoshino. Biochem Biophys Res Commun 2013
18
66

Decapping is preceded by 3' uridylation in a novel pathway of bulk mRNA turnover.
Olivia S Rissland, Chris J Norbury. Nat Struct Mol Biol 2009
152
11

A family of poly(U) polymerases.
Jae Eun Kwak, Marvin Wickens. RNA 2007
109
11

Lin28-mediated control of let-7 microRNA expression by alternative TUTases Zcchc11 (TUT4) and Zcchc6 (TUT7).
James E Thornton, Hao-Ming Chang, Elena Piskounova, Richard I Gregory. RNA 2012
131
11

A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans.
Liaoteng Wang, Christian R Eckmann, Lisa C Kadyk, Marvin Wickens, Judith Kimble. Nature 2002
222
11



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.