Hong Hao, Douglas S Kim, Bernward Klocke, Kory R Johnson, Kairong Cui, Norimoto Gotoh, Chongzhi Zang, Janina Gregorski, Linn Gieser, Weiqun Peng, Yang Fann, Martin Seifert, Keji Zhao, Anand Swaroop. PLoS Genet 2012
Times Cited: 75
Times Cited: 75
Times Cited
Times Co-cited
Similarity
CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors.
Joseph C Corbo, Karen A Lawrence, Marcus Karlstetter, Connie A Myers, Musa Abdelaziz, William Dirkes, Karin Weigelt, Martin Seifert, Vladimir Benes, Lars G Fritsche,[...]. Genome Res 2010
Joseph C Corbo, Karen A Lawrence, Marcus Karlstetter, Connie A Myers, Musa Abdelaziz, William Dirkes, Karin Weigelt, Martin Seifert, Vladimir Benes, Lars G Fritsche,[...]. Genome Res 2010
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Nrl is required for rod photoreceptor development.
A J Mears, M Kondo, P K Swain, Y Takada, R A Bush, T L Saunders, P A Sieving, A Swaroop. Nat Genet 2001
A J Mears, M Kondo, P K Swain, Y Takada, R A Bush, T L Saunders, P A Sieving, A Swaroop. Nat Genet 2001
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Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
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Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development.
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
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Retinopathy and attenuated circadian entrainment in Crx-deficient mice.
T Furukawa, E M Morrow, T Li, F C Davis, C L Cepko. Nat Genet 1999
T Furukawa, E M Morrow, T Li, F C Davis, C L Cepko. Nat Genet 1999
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Crx, a novel otx-like homeobox gene, shows photoreceptor-specific expression and regulates photoreceptor differentiation.
T Furukawa, E M Morrow, C L Cepko. Cell 1997
T Furukawa, E M Morrow, C L Cepko. Cell 1997
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Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes.
S Chen, Q L Wang, Z Nie, H Sun, G Lennon, N G Copeland, D J Gilbert, N A Jenkins, D J Zack. Neuron 1997
S Chen, Q L Wang, Z Nie, H Sun, G Lennon, N G Copeland, D J Gilbert, N A Jenkins, D J Zack. Neuron 1997
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Transformation of cone precursors to functional rod photoreceptors by bZIP transcription factor NRL.
Edwin C T Oh, Naheed Khan, Elena Novelli, Hemant Khanna, Enrica Strettoi, Anand Swaroop. Proc Natl Acad Sci U S A 2007
Edwin C T Oh, Naheed Khan, Elena Novelli, Hemant Khanna, Enrica Strettoi, Anand Swaroop. Proc Natl Acad Sci U S A 2007
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The cis-regulatory logic of the mammalian photoreceptor transcriptional network.
Timothy H-C Hsiau, Claudiu Diaconu, Connie A Myers, Jongwoo Lee, Constance L Cepko, Joseph C Corbo. PLoS One 2007
Timothy H-C Hsiau, Claudiu Diaconu, Connie A Myers, Jongwoo Lee, Constance L Cepko, Joseph C Corbo. PLoS One 2007
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The leucine zipper of NRL interacts with the CRX homeodomain. A possible mechanism of transcriptional synergy in rhodopsin regulation.
K P Mitton, P K Swain, S Chen, S Xu, D J Zack, A Swaroop. J Biol Chem 2000
K P Mitton, P K Swain, S Chen, S Xu, D J Zack, A Swaroop. J Biol Chem 2000
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The photoreceptor-specific nuclear receptor Nr2e3 interacts with Crx and exerts opposing effects on the transcription of rod versus cone genes.
Guang-Hua Peng, Omar Ahmad, Faisel Ahmad, Jianfeng Liu, Shiming Chen. Hum Mol Genet 2005
Guang-Hua Peng, Omar Ahmad, Faisel Ahmad, Jianfeng Liu, Shiming Chen. Hum Mol Genet 2005
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Rod differentiation factor NRL activates the expression of nuclear receptor NR2E3 to suppress the development of cone photoreceptors.
Edwin C T Oh, Hong Cheng, Hong Hao, Lin Jia, Naheed Wali Khan, Anand Swaroop. Brain Res 2008
Edwin C T Oh, Hong Cheng, Hong Hao, Lin Jia, Naheed Wali Khan, Anand Swaroop. Brain Res 2008
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Two transcription factors can direct three photoreceptor outcomes from rod precursor cells in mouse retinal development.
Lily Ng, Ailing Lu, Alok Swaroop, David S Sharlin, Anand Swaroop, Douglas Forrest. J Neurosci 2011
Lily Ng, Ailing Lu, Alok Swaroop, David S Sharlin, Anand Swaroop, Douglas Forrest. J Neurosci 2011
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Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.
Matthew J Brooks, Harsha K Rajasimha, Jerome E Roger, Anand Swaroop. Mol Vis 2011
Matthew J Brooks, Harsha K Rajasimha, Jerome E Roger, Anand Swaroop. Mol Vis 2011
22
Retinoid-related orphan nuclear receptor RORbeta is an early-acting factor in rod photoreceptor development.
Li Jia, Edwin C T Oh, Lily Ng, Maya Srinivas, Matthew Brooks, Anand Swaroop, Douglas Forrest. Proc Natl Acad Sci U S A 2009
Li Jia, Edwin C T Oh, Lily Ng, Maya Srinivas, Matthew Brooks, Anand Swaroop, Douglas Forrest. Proc Natl Acad Sci U S A 2009
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Transcriptional code and disease map for adult retinal cell types.
Sandra Siegert, Erik Cabuy, Brigitte Gross Scherf, Hubertus Kohler, Satchidananda Panda, Yun-Zheng Le, Hans Jörg Fehling, Dimos Gaidatzis, Michael B Stadler, Botond Roska. Nat Neurosci 2012
Sandra Siegert, Erik Cabuy, Brigitte Gross Scherf, Hubertus Kohler, Satchidananda Panda, Yun-Zheng Le, Hans Jörg Fehling, Dimos Gaidatzis, Michael B Stadler, Botond Roska. Nat Neurosci 2012
21
Regulation of photoreceptor gene expression by Crx-associated transcription factor network.
Anne K Hennig, Guang-Hua Peng, Shiming Chen. Brain Res 2008
Anne K Hennig, Guang-Hua Peng, Shiming Chen. Brain Res 2008
21
Epigenomic landscapes of retinal rods and cones.
Alisa Mo, Chongyuan Luo, Fred P Davis, Eran A Mukamel, Gilbert L Henry, Joseph R Nery, Mark A Urich, Serge Picard, Ryan Lister, Sean R Eddy,[...]. Elife 2016
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21
Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor.
C L Freund, C Y Gregory-Evans, T Furukawa, M Papaioannou, J Looser, L Ploder, J Bellingham, D Ng, J A Herbrick, A Duncan,[...]. Cell 1997
C L Freund, C Y Gregory-Evans, T Furukawa, M Papaioannou, J Looser, L Ploder, J Bellingham, D Ng, J A Herbrick, A Duncan,[...]. Cell 1997
20
Expression profiling of the developing and mature Nrl-/- mouse retina: identification of retinal disease candidates and transcriptional regulatory targets of Nrl.
Shigeo Yoshida, Alan J Mears, James S Friedman, Todd Carter, Shirley He, Edwin Oh, Yuezhou Jing, Rafal Farjo, Gilles Fleury, Carrolee Barlow,[...]. Hum Mol Genet 2004
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20
Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors.
Masayuki Akimoto, Hong Cheng, Dongxiao Zhu, Joseph A Brzezinski, Ritu Khanna, Elena Filippova, Edwin C T Oh, Yuezhou Jing, Jose-Luis Linares, Matthew Brooks,[...]. Proc Natl Acad Sci U S A 2006
Masayuki Akimoto, Hong Cheng, Dongxiao Zhu, Joseph A Brzezinski, Ritu Khanna, Elena Filippova, Edwin C T Oh, Yuezhou Jing, Jose-Luis Linares, Matthew Brooks,[...]. Proc Natl Acad Sci U S A 2006
20
OTX2 loss causes rod differentiation defect in CRX-associated congenital blindness.
Jerome E Roger, Avinash Hiriyanna, Norimoto Gotoh, Hong Hao, Debbie F Cheng, Rinki Ratnapriya, Marie-Audrey I Kautzmann, Bo Chang, Anand Swaroop. J Clin Invest 2014
Jerome E Roger, Avinash Hiriyanna, Norimoto Gotoh, Hong Hao, Debbie F Cheng, Rinki Ratnapriya, Marie-Audrey I Kautzmann, Bo Chang, Anand Swaroop. J Clin Invest 2014
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The rod photoreceptor-specific nuclear receptor Nr2e3 represses transcription of multiple cone-specific genes.
Jichao Chen, Amir Rattner, Jeremy Nathans. J Neurosci 2005
Jichao Chen, Amir Rattner, Jeremy Nathans. J Neurosci 2005
18
The transcription factor neural retina leucine zipper (NRL) controls photoreceptor-specific expression of myocyte enhancer factor Mef2c from an alternative promoter.
Hong Hao, Padmaja Tummala, Eduardo Guzman, Raghuveer S Mali, Janina Gregorski, Anand Swaroop, Kenneth P Mitton. J Biol Chem 2011
Hong Hao, Padmaja Tummala, Eduardo Guzman, Raghuveer S Mali, Janina Gregorski, Anand Swaroop, Kenneth P Mitton. J Biol Chem 2011
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Otx2 ChIP-seq reveals unique and redundant functions in the mature mouse retina.
Alexander Samuel, Michael Housset, Bruno Fant, Thomas Lamonerie. PLoS One 2014
Alexander Samuel, Michael Housset, Bruno Fant, Thomas Lamonerie. PLoS One 2014
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Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals.
Jung-Woong Kim, Hyun-Jin Yang, Adam Phillip Oel, Matthew John Brooks, Li Jia, David Charles Plachetzki, Wei Li, William Ted Allison, Anand Swaroop. Dev Cell 2016
Jung-Woong Kim, Hyun-Jin Yang, Adam Phillip Oel, Matthew John Brooks, Li Jia, David Charles Plachetzki, Wei Li, William Ted Allison, Anand Swaroop. Dev Cell 2016
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Photoreceptor degeneration: genetic and mechanistic dissection of a complex trait.
Alan F Wright, Christina F Chakarova, Mai M Abd El-Aziz, Shomi S Bhattacharya. Nat Rev Genet 2010
Alan F Wright, Christina F Chakarova, Mai M Abd El-Aziz, Shomi S Bhattacharya. Nat Rev Genet 2010
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Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes.
S Blackshaw, R E Fraioli, T Furukawa, C L Cepko. Cell 2001
S Blackshaw, R E Fraioli, T Furukawa, C L Cepko. Cell 2001
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A thyroid hormone receptor that is required for the development of green cone photoreceptors.
L Ng, J B Hurley, B Dierks, M Srinivas, C Saltó, B Vennström, T A Reh, D Forrest. Nat Genet 2001
L Ng, J B Hurley, B Dierks, M Srinivas, C Saltó, B Vennström, T A Reh, D Forrest. Nat Genet 2001
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Transcriptional regulation of neural retina leucine zipper (Nrl), a photoreceptor cell fate determinant.
Cynthia L Montana, Karen A Lawrence, Natecia L Williams, Nicholas M Tran, Guang-Hua Peng, Shiming Chen, Joseph C Corbo. J Biol Chem 2011
Cynthia L Montana, Karen A Lawrence, Natecia L Williams, Nicholas M Tran, Guang-Hua Peng, Shiming Chen, Joseph C Corbo. J Biol Chem 2011
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Mutation of a nuclear receptor gene, NR2E3, causes enhanced S cone syndrome, a disorder of retinal cell fate.
N B Haider, S G Jacobson, A V Cideciyan, R Swiderski, L M Streb, C Searby, G Beck, R Hockey, D B Hanna, S Gorman,[...]. Nat Genet 2000
N B Haider, S G Jacobson, A V Cideciyan, R Swiderski, L M Streb, C Searby, G Beck, R Hockey, D B Hanna, S Gorman,[...]. Nat Genet 2000
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Photoreceptor-specific nuclear receptor NR2E3 functions as a transcriptional activator in rod photoreceptors.
Hong Cheng, Hemant Khanna, Edwin C T Oh, David Hicks, Kenneth P Mitton, Anand Swaroop. Hum Mol Genet 2004
Hong Cheng, Hemant Khanna, Edwin C T Oh, David Hicks, Kenneth P Mitton, Anand Swaroop. Hum Mol Genet 2004
14
Electroporation and RNA interference in the rodent retina in vivo and in vitro.
Takahiko Matsuda, Constance L Cepko. Proc Natl Acad Sci U S A 2004
Takahiko Matsuda, Constance L Cepko. Proc Natl Acad Sci U S A 2004
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BEDTools: a flexible suite of utilities for comparing genomic features.
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
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Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
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Retinal transcriptome profiling by directional next-generation sequencing using 100 ng of total RNA.
Matthew J Brooks, Harsha Karur Rajasimha, Anand Swaroop. Methods Mol Biol 2012
Matthew J Brooks, Harsha Karur Rajasimha, Anand Swaroop. Methods Mol Biol 2012
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A hybrid photoreceptor expressing both rod and cone genes in a mouse model of enhanced S-cone syndrome.
Joseph C Corbo, Constance L Cepko. PLoS Genet 2005
Joseph C Corbo, Constance L Cepko. PLoS Genet 2005
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NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors.
Jung-Woong Kim, Hyun-Jin Yang, Matthew John Brooks, Lina Zelinger, Gökhan Karakülah, Norimoto Gotoh, Alexis Boleda, Linn Gieser, Felipe Giuste, Dustin Thad Whitaker,[...]. Cell Rep 2016
Jung-Woong Kim, Hyun-Jin Yang, Matthew John Brooks, Lina Zelinger, Gökhan Karakülah, Norimoto Gotoh, Alexis Boleda, Linn Gieser, Felipe Giuste, Dustin Thad Whitaker,[...]. Cell Rep 2016
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Sumoylation of bZIP transcription factor NRL modulates target gene expression during photoreceptor differentiation.
Jerome E Roger, Jacob Nellissery, Douglas S Kim, Anand Swaroop. J Biol Chem 2010
Jerome E Roger, Jacob Nellissery, Douglas S Kim, Anand Swaroop. J Biol Chem 2010
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Combinatorial regulation of photoreceptor differentiation factor, neural retina leucine zipper gene NRL, revealed by in vivo promoter analysis.
Marie-Audrey I Kautzmann, Douglas S Kim, Marie-Paule Felder-Schmittbuhl, Anand Swaroop. J Biol Chem 2011
Marie-Audrey I Kautzmann, Douglas S Kim, Marie-Paule Felder-Schmittbuhl, Anand Swaroop. J Biol Chem 2011
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Stage and gene specific signatures defined by histones H3K4me2 and H3K27me3 accompany mammalian retina maturation in vivo.
Evgenya Y Popova, Xuming Xu, Andrew T DeWan, Anna C Salzberg, Arthur Berg, Josephine Hoh, Samuel S Zhang, Colin J Barnstable. PLoS One 2012
Evgenya Y Popova, Xuming Xu, Andrew T DeWan, Anna C Salzberg, Arthur Berg, Josephine Hoh, Samuel S Zhang, Colin J Barnstable. PLoS One 2012
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The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
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In vivo function of the orphan nuclear receptor NR2E3 in establishing photoreceptor identity during mammalian retinal development.
Hong Cheng, Tomas S Aleman, Artur V Cideciyan, Ritu Khanna, Samuel G Jacobson, Anand Swaroop. Hum Mol Genet 2006
Hong Cheng, Tomas S Aleman, Artur V Cideciyan, Ritu Khanna, Samuel G Jacobson, Anand Swaroop. Hum Mol Genet 2006
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Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks.
Michael A White, Connie A Myers, Joseph C Corbo, Barak A Cohen. Proc Natl Acad Sci U S A 2013
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From progenitors to differentiated cells in the vertebrate retina.
Michalis Agathocleous, William A Harris. Annu Rev Cell Dev Biol 2009
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The orphan nuclear hormone receptor ERRbeta controls rod photoreceptor survival.
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Rods and cones in the mouse retina. II. Autoradiographic analysis of cell generation using tritiated thymidine.
L D Carter-Dawson, M M LaVail. J Comp Neurol 1979
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.