A citation-based method for searching scientific literature

Stephanie C Weber, Andrew J Spakowitz, Julie A Theriot. Proc Natl Acad Sci U S A 2012
Times Cited: 185







List of co-cited articles
929 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Bacterial chromosomal loci move subdiffusively through a viscoelastic cytoplasm.
Stephanie C Weber, Andrew J Spakowitz, Julie A Theriot. Phys Rev Lett 2010
312
37

Micron-scale coherence in interphase chromatin dynamics.
Alexandra Zidovska, David A Weitz, Timothy J Mitchison. Proc Natl Acad Sci U S A 2013
132
27

The bacterial cytoplasm has glass-like properties and is fluidized by metabolic activity.
Bradley R Parry, Ivan V Surovtsev, Matthew T Cabeen, Corey S O'Hern, Eric R Dufresne, Christine Jacobs-Wagner. Cell 2014
374
23

Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization.
Avelino Javer, Zhicheng Long, Eileen Nugent, Marco Grisi, Kamin Siriwatwetchakul, Kevin D Dorfman, Pietro Cicuta, Marco Cosentino Lagomarsino. Nat Commun 2013
72
30

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
21

Dynamics of active Rouse chains.
Dino Osmanović, Yitzhak Rabin. Soft Matter 2017
37
45

Dynamics of active semiflexible polymers.
A Ghosh, N S Gov. Biophys J 2014
59
27

Dynamics of a polymer in an active and viscoelastic bath.
Hans Vandebroek, Carlo Vanderzande. Phys Rev E Stat Nonlin Soft Matter Phys 2015
36
44

High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome.
Houssam Hajjoul, Julien Mathon, Hubert Ranchon, Isabelle Goiffon, Julien Mozziconacci, Benjamin Albert, Pascal Carrivain, Jean-Marc Victor, Olivier Gadal, Kerstin Bystricky,[...]. Genome Res 2013
120
16

Probing the stochastic, motor-driven properties of the cytoplasm using force spectrum microscopy.
Ming Guo, Allen J Ehrlicher, Mikkel H Jensen, Malte Renz, Jeffrey R Moore, Robert D Goldman, Jennifer Lippincott-Schwartz, Frederick C Mackintosh, David A Weitz. Cell 2014
287
16

Subdiffusive motion of a polymer composed of subdiffusive monomers.
Stephanie C Weber, Julie A Theriot, Andrew J Spakowitz. Phys Rev E Stat Nonlin Soft Matter Phys 2010
71
22

Transient anomalous diffusion of telomeres in the nucleus of mammalian cells.
I Bronstein, Y Israel, E Kepten, S Mai, Y Shav-Tal, E Barkai, Y Garini. Phys Rev Lett 2009
241
15

Chromatin hydrodynamics.
Robijn Bruinsma, Alexander Y Grosberg, Yitzhak Rabin, Alexandra Zidovska. Biophys J 2014
60
25

Increased chromosome mobility facilitates homology search during recombination.
Judith Miné-Hattab, Rodney Rothstein. Nat Cell Biol 2012
238
14

Interphase chromosomes undergo constrained diffusional motion in living cells.
W F Marshall, A Straight, J F Marko, J Swedlow, A Dernburg, A Belmont, A W Murray, D A Agard, J W Sedat. Curr Biol 1997
494
14

Loss of lamin A function increases chromatin dynamics in the nuclear interior.
I Bronshtein, E Kepten, I Kanter, S Berezin, M Lindner, Abena B Redwood, S Mai, S Gonzalo, R Foisner, Y Shav-Tal,[...]. Nat Commun 2015
154
13

Increased mobility of double-strand breaks requires Mec1, Rad9 and the homologous recombination machinery.
Vincent Dion, Véronique Kalck, Chihiro Horigome, Benjamin D Towbin, Susan M Gasser. Nat Cell Biol 2012
212
13

Cytoplasmic diffusion: molecular motors mix it up.
Clifford P Brangwynne, Gijsje H Koenderink, Frederick C MacKintosh, David A Weitz. J Cell Biol 2008
131
13

Internal dynamics of semiflexible polymers with active noise.
Thomas Eisenstecken, Gerhard Gompper, Roland G Winkler. J Chem Phys 2017
34
38

Histone degradation in response to DNA damage enhances chromatin dynamics and recombination rates.
Michael H Hauer, Andrew Seeber, Vijender Singh, Raphael Thierry, Ragna Sack, Assaf Amitai, Mariya Kryzhanovska, Jan Eglinger, David Holcman, Tom Owen-Hughes,[...]. Nat Struct Mol Biol 2017
145
12

Cohesin and the nucleolus constrain the mobility of spontaneous repair foci.
Vincent Dion, Véronique Kalck, Andrew Seeber, Thomas Schleker, Susan M Gasser. EMBO Rep 2013
71
16

Microrheology, stress fluctuations, and active behavior of living cells.
A W C Lau, B D Hoffman, A Davies, J C Crocker, T C Lubensky. Phys Rev Lett 2003
238
12

Nonequilibrium mechanics of active cytoskeletal networks.
Daisuke Mizuno, Catherine Tardin, C F Schmidt, F C Mackintosh. Science 2007
461
12

Chromosome positioning from activity-based segregation.
Nirmalendu Ganai, Surajit Sengupta, Gautam I Menon. Nucleic Acids Res 2014
69
17

How does a flexible chain of active particles swell?
Andreas Kaiser, Sonja Babel, Borge ten Hagen, Christian von Ferber, Hartmut Löwen. J Chem Phys 2015
53
20

Chromosome dynamics in the yeast interphase nucleus.
P Heun, T Laroche, K Shimada, P Furrer, S M Gasser. Science 2001
345
11

Persistent super-diffusive motion of Escherichia coli chromosomal loci.
Avelino Javer, Nathan J Kuwada, Zhicheng Long, Vincenzo G Benza, Kevin D Dorfman, Paul A Wiggins, Pietro Cicuta, Marco Cosentino Lagomarsino. Nat Commun 2014
48
22

Conformational Properties of Active Semiflexible Polymers.
Thomas Eisenstecken, Gerhard Gompper, Roland G Winkler. Polymers (Basel) 2016
46
23

Activity-induced collapse and reexpansion of rigid polymers.
J Harder, C Valeriani, A Cacciuto. Phys Rev E Stat Nonlin Soft Matter Phys 2014
56
19

Physical Modeling of Dynamic Coupling between Chromosomal Loci.
Thomas J Lampo, Andrew S Kennard, Andrew J Spakowitz. Biophys J 2016
21
52


Chromatin dynamics in interphase cells revealed by tracking in a two-photon excitation microscope.
Valeria Levi, QiaoQiao Ruan, Matthew Plutz, Andrew S Belmont, Enrico Gratton. Biophys J 2005
159
10

Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.
Maya Spichal, Alice Brion, Sébastien Herbert, Axel Cournac, Martial Marbouty, Christophe Zimmer, Romain Koszul, Emmanuelle Fabre. J Cell Sci 2016
55
18

Centromere tethering confines chromosome domains.
Jolien Suzanne Verdaasdonk, Paula Andrea Vasquez, Raymond Mario Barry, Timothy Barry, Scott Goodwin, M Gregory Forest, Kerry Bloom. Mol Cell 2013
61
16

Polymer model with long-range interactions: analysis and applications to the chromatin structure.
A Amitai, D Holcman. Phys Rev E Stat Nonlin Soft Matter Phys 2013
25
40

High-resolution mapping of intracellular fluctuations using carbon nanotubes.
Nikta Fakhri, Alok D Wessel, Charlotte Willms, Matteo Pasquali, Dieter R Klopfenstein, Frederick C MacKintosh, Christoph F Schmidt. Science 2014
125
10

Nonequilibrium mechanics and dynamics of motor-activated gels.
F C MacKintosh, A J Levine. Phys Rev Lett 2008
107
10


Broken detailed balance and non-equilibrium dynamics in living systems: a review.
F S Gnesotto, F Mura, J Gladrow, C P Broedersz. Rep Prog Phys 2018
74
13

Active diffusion of model chromosomal loci driven by athermal noise.
Takahiro Sakaue, Takuya Saito. Soft Matter 2016
20
45

Nonequilibrium microtubule fluctuations in a model cytoskeleton.
Clifford P Brangwynne, Gijsje H Koenderink, Frederick C Mackintosh, David A Weitz. Phys Rev Lett 2008
99
9

Enhanced diffusion in active intracellular transport.
A Caspi, R Granek, M Elbaum. Phys Rev Lett 2000
196
9

How Far from Equilibrium Is Active Matter?
Étienne Fodor, Cesare Nardini, Michael E Cates, Julien Tailleur, Paolo Visco, Frédéric van Wijland. Phys Rev Lett 2016
204
9

Random bursts determine dynamics of active filaments.
Christoph A Weber, Ryo Suzuki, Volker Schaller, Igor S Aranson, Andreas R Bausch, Erwin Frey. Proc Natl Acad Sci U S A 2015
25
36

Broken detailed balance at mesoscopic scales in active biological systems.
Christopher Battle, Chase P Broedersz, Nikta Fakhri, Veikko F Geyer, Jonathon Howard, Christoph F Schmidt, Fred C MacKintosh. Science 2016
122
9

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
9

Fractal Folding and Medium Viscoelasticity Contribute Jointly to Chromosome Dynamics.
K E Polovnikov, M Gherardi, M Cosentino-Lagomarsino, M V Tamm. Phys Rev Lett 2018
26
34

Extensile motor activity drives coherent motions in a model of interphase chromatin.
David Saintillan, Michael J Shelley, Alexandra Zidovska. Proc Natl Acad Sci U S A 2018
32
28

Long-range directional movement of an interphase chromosome site.
Chien-Hui Chuang, Anne E Carpenter, Beata Fuchsova, Terezina Johnson, Primal de Lanerolle, Andrew S Belmont. Curr Biol 2006
391
8



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.