A citation-based method for searching scientific literature

Shifeng Xue, Maria Barna. Nat Rev Mol Cell Biol 2012
Times Cited: 398







List of co-cited articles
1216 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide.
Zhen Shi, Kotaro Fujii, Kyle M Kovary, Naomi R Genuth, Hannes L Röst, Mary N Teruel, Maria Barna. Mol Cell 2017
248
32


Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning.
Nadya Kondrashov, Aya Pusic, Craig R Stumpf, Kunihiko Shimizu, Andrew C Hsieh, Junko Ishijima, Toshihiko Shiroishi, Maria Barna. Cell 2011
341
21

Ribosomopathies: There's strength in numbers.
Eric W Mills, Rachel Green. Science 2017
167
15

Differential Stoichiometry among Core Ribosomal Proteins.
Nikolai Slavov, Stefan Semrau, Edoardo Airoldi, Bogdan Budnik, Alexander van Oudenaarden. Cell Rep 2015
101
15


Does functional specialization of ribosomes really exist?
Max B Ferretti, Katrin Karbstein. RNA 2019
40
37

Functional specificity among ribosomal proteins regulates gene expression.
Suzanne Komili, Natalie G Farny, Frederick P Roth, Pamela A Silver. Cell 2007
241
14

The ribosome filter hypothesis.
Vincent P Mauro, Gerald M Edelman. Proc Natl Acad Sci U S A 2002
176
13


RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation.
Shifeng Xue, Siqi Tian, Kotaro Fujii, Wipapat Kladwang, Rhiju Das, Maria Barna. Nature 2015
179
13

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
13

Functional specialization of ribosomes?
Wendy V Gilbert. Trends Biochem Sci 2011
77
15


Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function.
Katherine E Sloan, Ahmed S Warda, Sunny Sharma, Karl-Dieter Entian, Denis L J Lafontaine, Markus T Bohnsack. RNA Biol 2017
227
11

Evidence for rRNA 2'-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes.
Jenny Erales, Virginie Marchand, Baptiste Panthu, Sandra Gillot, Stéphane Belin, Sandra E Ghayad, Maxime Garcia, Florian Laforêts, Virginie Marcel, Agnès Baudin-Baillieu,[...]. Proc Natl Acad Sci U S A 2017
104
11

The Mammalian Ribo-interactome Reveals Ribosome Functional Diversity and Heterogeneity.
Deniz Simsek, Gerald C Tiu, Ryan A Flynn, Gun W Byeon, Kathrin Leppek, Adele F Xu, Howard Y Chang, Maria Barna. Cell 2017
180
11

Ribosomopathies: human disorders of ribosome dysfunction.
Anupama Narla, Benjamin L Ebert. Blood 2010
491
10

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
322
10



Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.
Rajiv K Khajuria, Mathias Munschauer, Jacob C Ulirsch, Claudia Fiorini, Leif S Ludwig, Sean K McFarland, Nour J Abdulhay, Harrison Specht, Hasmik Keshishian, D R Mani,[...]. Cell 2018
143
9

Profiling of 2'-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity.
Nicolai Krogh, Martin D Jansson, Sophia J Häfner, Disa Tehler, Ulf Birkedal, Mikkel Christensen-Dalsgaard, Anders H Lund, Henrik Nielsen. Nucleic Acids Res 2016
124
9

Ribosomal proteins: functions beyond the ribosome.
Xiang Zhou, Wen-Juan Liao, Jun-Ming Liao, Peng Liao, Hua Lu. J Mol Cell Biol 2015
289
8

Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli.
Oliver Vesper, Shahar Amitai, Maria Belitsky, Konstantin Byrgazov, Anna Chao Kaberdina, Hanna Engelberg-Kulka, Isabella Moll. Cell 2011
210
8


Eukaryotic ribosome assembly, transport and quality control.
Cohue Peña, Ed Hurt, Vikram Govind Panse. Nat Struct Mol Biol 2017
107
8

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
718
8

Variant ribosomal RNA alleles are conserved and exhibit tissue-specific expression.
Matthew M Parks, Chad M Kurylo, Randall A Dass, Linda Bojmar, David Lyden, C Theresa Vincent, Scott C Blanchard. Sci Adv 2018
83
9

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
8

Driving ribosome assembly.
Dieter Kressler, Ed Hurt, Jochen Bassler. Biochim Biophys Acta 2010
332
8

How common are extraribosomal functions of ribosomal proteins?
Jonathan R Warner, Kerri B McIntosh. Mol Cell 2009
447
8

Heterogeneity of the translational machinery: Variations on a common theme.
Martina Sauert, Hannes Temmel, Isabella Moll. Biochimie 2015
52
13

High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome.
Patrick Giavalisco, Daniel Wilson, Thomas Kreitler, Hans Lehrach, Joachim Klose, Johan Gobom, Paola Fucini. Plant Mol Biol 2005
91
7

The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.
A Barakat, K Szick-Miranda, I F Chang, R Guyot, G Blanc, R Cooke, M Delseny, J Bailey-Serres. Plant Physiol 2001
204
7

Identification of sites of 2'-O-methylation vulnerability in human ribosomal RNAs by systematic mapping.
Sunny Sharma, Virginie Marchand, Yuri Motorin, Denis L J Lafontaine. Sci Rep 2017
59
11

Dysregulation of ribosome biogenesis and translational capacity is associated with tumor progression of human breast cancer cells.
Stéphane Belin, Anne Beghin, Eduardo Solano-Gonzàlez, Laurent Bezin, Stéphanie Brunet-Manquat, Julien Textoris, Anne-Catherine Prats, Hichem C Mertani, Charles Dumontet, Jean-Jacques Diaz. PLoS One 2009
144
7

Rps26 directs mRNA-specific translation by recognition of Kozak sequence elements.
Max B Ferretti, Homa Ghalei, Ethan A Ward, Elizabeth L Potts, Katrin Karbstein. Nat Struct Mol Biol 2017
52
13


The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments.
Nicholas T Ingolia, Gloria A Brar, Silvia Rouskin, Anna M McGeachy, Jonathan S Weissman. Nat Protoc 2012
630
7

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
7

Structure of the human 80S ribosome.
Heena Khatter, Alexander G Myasnikov, S Kundhavai Natchiar, Bruno P Klaholz. Nature 2015
228
7

Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation.
Carlos G Sanchez, Felipe Karam Teixeira, Benjamin Czech, Jonathan B Preall, Andrea L Zamparini, Jessica R K Seifert, Colin D Malone, Gregory J Hannon, Ruth Lehmann. Cell Stem Cell 2016
98
7

Global quantification of mammalian gene expression control.
Björn Schwanhäusser, Dorothea Busse, Na Li, Gunnar Dittmar, Johannes Schuchhardt, Jana Wolf, Wei Chen, Matthias Selbach. Nature 2011
7

Eukaryotic Ribosome Assembly.
Jochen Baßler, Ed Hurt. Annu Rev Biochem 2019
94
7

Ribosome Stoichiometry: From Form to Function.
Edward Emmott, Marko Jovanovic, Nikolai Slavov. Trends Biochem Sci 2019
35
20

Emerging Role of Eukaryote Ribosomes in Translational Control.
Nicole Dalla Venezia, Anne Vincent, Virginie Marcel, Frédéric Catez, Jean-Jacques Diaz. Int J Mol Sci 2019
30
23

Differential expression of duplicated ribosomal protein genes modifies ribosome composition in response to stress.
Mustafa Malik Ghulam, Mathieu Catala, Sherif Abou Elela. Nucleic Acids Res 2020
18
38

Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development.
Mauro D Locati, Johanna F B Pagano, Geneviève Girard, Wim A Ensink, Marina van Olst, Selina van Leeuwen, Ulrike Nehrdich, Herman P Spaink, Han Rauwerda, Martijs J Jonker,[...]. RNA 2017
40
17

Endogenous rRNA Sequence Variation Can Regulate Stress Response Gene Expression and Phenotype.
Chad M Kurylo, Matthew M Parks, Manuel F Juette, Boris Zinshteyn, Roger B Altman, Jordana K Thibado, C Theresa Vincent, Scott C Blanchard. Cell Rep 2018
40
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.