A citation-based method for searching scientific literature

David N LeBard, Jérôme Hénin, Roderic G Eckenhoff, Michael L Klein, Grace Brannigan. PLoS Comput Biol 2012
Times Cited: 51







List of co-cited articles
509 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


X-ray structures of general anaesthetics bound to a pentameric ligand-gated ion channel.
Hugues Nury, Catherine Van Renterghem, Yun Weng, Alphonso Tran, Marc Baaden, Virginie Dufresne, Jean-Pierre Changeux, James M Sonner, Marc Delarue, Pierre-Jean Corringer. Nature 2011
333
66

X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation.
Nicolas Bocquet, Hugues Nury, Marc Baaden, Chantal Le Poupon, Jean-Pierre Changeux, Marc Delarue, Pierre-Jean Corringer. Nature 2009
556
56

Multiple binding sites for the general anesthetic isoflurane identified in the nicotinic acetylcholine receptor transmembrane domain.
Grace Brannigan, David N LeBard, Jérôme Hénin, Roderic G Eckenhoff, Michael L Klein. Proc Natl Acad Sci U S A 2010
88
52



Anesthetic sensitivity of the Gloeobacter violaceus proton-gated ion channel.
Yun Weng, Liya Yang, Pierre-Jean Corringer, James M Sonner. Anesth Analg 2010
78
43


Scalable molecular dynamics with NAMD.
James C Phillips, Rosemary Braun, Wei Wang, James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D Skeel, Laxmikant Kalé, Klaus Schulten. J Comput Chem 2005
41

A locally closed conformation of a bacterial pentameric proton-gated ion channel.
Marie S Prevost, Ludovic Sauguet, Hugues Nury, Catherine Van Renterghem, Christèle Huon, Frederic Poitevin, Marc Baaden, Marc Delarue, Pierre-Jean Corringer. Nat Struct Mol Biol 2012
117
39

Isoflurane alters the structure and dynamics of GLIC.
Dan Willenbring, Lu Tian Liu, David Mowrey, Yan Xu, Pei Tang. Biophys J 2011
34
58

Microsecond simulations indicate that ethanol binds between subunits and could stabilize an open-state model of a glycine receptor.
Samuel Murail, Björn Wallner, James R Trudell, Edward Bertaccini, Erik Lindahl. Biophys J 2011
63
37

VMD: visual molecular dynamics.
W Humphrey, A Dalke, K Schulten. J Mol Graph 1996
35

Structural basis for alcohol modulation of a pentameric ligand-gated ion channel.
Rebecca J Howard, Samuel Murail, Kathryn E Ondricek, Pierre-Jean Corringer, Erik Lindahl, James R Trudell, R Adron Harris. Proc Natl Acad Sci U S A 2011
84
33

Structural basis for potentiation by alcohols and anaesthetics in a ligand-gated ion channel.
Ludovic Sauguet, Rebecca J Howard, Laurie Malherbe, Ui S Lee, Pierre-Jean Corringer, R Adron Harris, Marc Delarue. Nat Commun 2013
112
33

Asymmetric ligand binding facilitates conformational transitions in pentameric ligand-gated ion channels.
David Mowrey, Mary Hongying Cheng, Lu Tian Liu, Dan Willenbring, Xinghua Lu, Troy Wymore, Yan Xu, Pei Tang. J Am Chem Soc 2013
37
45

Multisite binding of a general anesthetic to the prokaryotic pentameric Erwinia chrysanthemi ligand-gated ion channel (ELIC).
Radovan Spurny, Bert Billen, Rebecca J Howard, Marijke Brams, Sarah Debaveye, Kerry L Price, David A Weston, Sergei V Strelkov, Jan Tytgat, Sonia Bertrand,[...]. J Biol Chem 2013
81
33

Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels.
Ludovic Sauguet, Frédéric Poitevin, Samuel Murail, Catherine Van Renterghem, Gustavo Moraga-Cid, Laurie Malherbe, Andrew W Thompson, Patrice Koehl, Pierre-Jean Corringer, Marc Baaden,[...]. EMBO J 2013
109
29


Structure of the pentameric ligand-gated ion channel GLIC bound with anesthetic ketamine.
Jianjun Pan, Qiang Chen, Dan Willenbring, David Mowrey, Xiang-Peng Kong, Aina Cohen, Christopher B Divito, Yan Xu, Pei Tang. Structure 2012
73
27

Anesthetic binding in a pentameric ligand-gated ion channel: GLIC.
Qiang Chen, Mary Hongying Cheng, Yan Xu, Pei Tang. Biophys J 2010
42
33

Structural basis of open channel block in a prokaryotic pentameric ligand-gated ion channel.
Ricarda J C Hilf, Carlo Bertozzi, Iwan Zimmermann, Alwin Reiter, Dirk Trauner, Raimund Dutzler. Nat Struct Mol Biol 2010
80
27

Molecular mechanism for the dual alcohol modulation of Cys-loop receptors.
Samuel Murail, Rebecca J Howard, Torben Broemstrup, Edward J Bertaccini, R Adron Harris, James R Trudell, Erik Lindahl. PLoS Comput Biol 2012
34
41

Identification of propofol binding sites in a nicotinic acetylcholine receptor with a photoreactive propofol analog.
Selwyn S Jayakar, William P Dailey, Roderic G Eckenhoff, Jonathan B Cohen. J Biol Chem 2013
63
27

One-microsecond molecular dynamics simulation of channel gating in a nicotinic receptor homologue.
Hugues Nury, Frédéric Poitevin, Catherine Van Renterghem, Jean-Pierre Changeux, Pierre-Jean Corringer, Marc Delarue, Marc Baaden. Proc Natl Acad Sci U S A 2010
122
25


Crystal structure of a human GABAA receptor.
Paul S Miller, A Radu Aricescu. Nature 2014
477
25

A prokaryotic proton-gated ion channel from the nicotinic acetylcholine receptor family.
Nicolas Bocquet, Lia Prado de Carvalho, Jean Cartaud, Jacques Neyton, Chantal Le Poupon, Antoine Taly, Thomas Grutter, Jean-Pierre Changeux, Pierre-Jean Corringer. Nature 2007
237
23


Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types.
Jeffery B Klauda, Richard M Venable, J Alfredo Freites, Joseph W O'Connor, Douglas J Tobias, Carlos Mondragon-Ramirez, Igor Vorobyov, Alexander D MacKerell, Richard W Pastor. J Phys Chem B 2010
21

Sites of alcohol and volatile anaesthetic action on GABA(A) and glycine receptors.
S J Mihic, Q Ye, M J Wick, V V Koltchine, M D Krasowski, S E Finn, M P Mascia, C F Valenzuela, K K Hanson, E P Greenblatt,[...]. Nature 1997
19


Structure of the pentameric ligand-gated ion channel ELIC cocrystallized with its competitive antagonist acetylcholine.
Jianjun Pan, Qiang Chen, Dan Willenbring, Ken Yoshida, Tommy Tillman, Ossama B Kashlan, Aina Cohen, Xiang-Peng Kong, Yan Xu, Pei Tang. Nat Commun 2012
84
19

All-atom empirical potential for molecular modeling and dynamics studies of proteins.
A D MacKerell, D Bashford, M Bellott, R L Dunbrack, J D Evanseck, M J Field, S Fischer, J Gao, H Guo, S Ha,[...]. J Phys Chem B 1998
19

Emerging molecular mechanisms of general anesthetic action.
Hugh C Hemmings, Myles H Akabas, Peter A Goldstein, James R Trudell, Beverley A Orser, Neil L Harrison. Trends Pharmacol Sci 2005
373
19

Pore opening and closing of a pentameric ligand-gated ion channel.
Fangqiang Zhu, Gerhard Hummer. Proc Natl Acad Sci U S A 2010
126
19

Structure and pharmacology of pentameric receptor channels: from bacteria to brain.
Pierre-Jean Corringer, Frédéric Poitevin, Marie S Prevost, Ludovic Sauguet, Marc Delarue, Jean-Pierre Changeux. Structure 2012
168
19

Crystal structures of a pentameric ligand-gated ion channel provide a mechanism for activation.
Ludovic Sauguet, Azadeh Shahsavar, Frédéric Poitevin, Christèle Huon, Anaïs Menny, Àkos Nemecz, Ahmed Haouz, Jean-Pierre Changeux, Pierre-Jean Corringer, Marc Delarue. Proc Natl Acad Sci U S A 2014
140
19

Identification of binding sites in the nicotinic acetylcholine receptor for TDBzl-etomidate, a photoreactive positive allosteric effector.
Selvanayagam Nirthanan, Galo Garcia, David C Chiara, S Shaukat Husain, Jonathan B Cohen. J Biol Chem 2008
58
17

Pentameric ligand-gated ion channel ELIC is activated by GABA and modulated by benzodiazepines.
Radovan Spurny, Joachim Ramerstorfer, Kerry Price, Marijke Brams, Margot Ernst, Hugues Nury, Mark Verheij, Pierre Legrand, Daniel Bertrand, Sonia Bertrand,[...]. Proc Natl Acad Sci U S A 2012
102
17


Sites of Anesthetic Inhibitory Action on a Cationic Ligand-Gated Ion Channel.
Benoist Laurent, Samuel Murail, Azadeh Shahsavar, Ludovic Sauguet, Marc Delarue, Marc Baaden. Structure 2016
27
33

Mutations that stabilize the open state of the Erwinia chrisanthemi ligand-gated ion channel fail to change the conformation of the pore domain in crystals.
Giovanni Gonzalez-Gutierrez, Tiit Lukk, Vinayak Agarwal, David Papke, Satish K Nair, Claudio Grosman. Proc Natl Acad Sci U S A 2012
74
15

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
15


A gating mechanism of pentameric ligand-gated ion channels.
Nicolas Calimet, Manuel Simoes, Jean-Pierre Changeux, Martin Karplus, Antoine Taly, Marco Cecchini. Proc Natl Acad Sci U S A 2013
100
15

The structural basis of function in Cys-loop receptors.
Andrew J Thompson, Henry A Lester, Sarah C R Lummis. Q Rev Biophys 2010
247
13

Identification of nicotinic acetylcholine receptor amino acids photolabeled by the volatile anesthetic halothane.
David C Chiara, Lawrence J Dangott, Roderic G Eckenhoff, Jonathan B Cohen. Biochemistry 2003
87
13

Mechanisms of actions of inhaled anesthetics.
Jason A Campagna, Keith W Miller, Stuart A Forman. N Engl J Med 2003
533
13


Functional prokaryotic-eukaryotic chimera from the pentameric ligand-gated ion channel family.
Guillaume Duret, Catherine Van Renterghem, Yun Weng, Marie Prevost, Gustavo Moraga-Cid, Christèle Huon, James M Sonner, Pierre-Jean Corringer. Proc Natl Acad Sci U S A 2011
70
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.