A citation-based method for searching scientific literature

Eunjung Lee, Rebecca Iskow, Lixing Yang, Omer Gokcumen, Psalm Haseley, Lovelace J Luquette, Jens G Lohr, Christopher C Harris, Li Ding, Richard K Wilson, David A Wheeler, Richard A Gibbs, Raju Kucherlapati, Charles Lee, Peter V Kharchenko, Peter J Park. Science 2012
Times Cited: 446







List of co-cited articles
1172 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
48

Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes.
Jose M C Tubio, Yilong Li, Young Seok Ju, Inigo Martincorena, Susanna L Cooke, Marta Tojo, Gunes Gundem, Christodoulos P Pipinikas, Jorge Zamora, Keiran Raine,[...]. Science 2014
210
35

Hot L1s account for the bulk of retrotransposition in the human population.
Brook Brouha, Joshua Schustak, Richard M Badge, Sheila Lutz-Prigge, Alexander H Farley, John V Moran, Haig H Kazazian. Proc Natl Acad Sci U S A 2003
640
33

Transposable elements in cancer.
Kathleen H Burns. Nat Rev Cancer 2017
160
31

Natural mutagenesis of human genomes by endogenous retrotransposons.
Rebecca C Iskow, Michael T McCabe, Ryan E Mills, Spencer Torene, W Stephen Pittard, Andrew F Neuwald, Erwin G Van Meir, Paula M Vertino, Scott E Devine. Cell 2010
392
25

LINE-1 retrotransposition activity in human genomes.
Christine R Beck, Pamela Collier, Catriona Macfarlane, Maika Malig, Jeffrey M Kidd, Evan E Eichler, Richard M Badge, John V Moran. Cell 2010
356
25

Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma.
Ruchi Shukla, Kyle R Upton, Martin Muñoz-Lopez, Daniel J Gerhardt, Malcolm E Fisher, Thu Nguyen, Paul M Brennan, J Kenneth Baillie, Agnese Collino, Serena Ghisletti,[...]. Cell 2013
247
25

Roles for retrotransposon insertions in human disease.
Dustin C Hancks, Haig H Kazazian. Mob DNA 2016
254
24

A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer.
Emma C Scott, Eugene J Gardner, Ashiq Masood, Nelson T Chuang, Paula M Vertino, Scott E Devine. Genome Res 2016
105
22

Regulatory activities of transposable elements: from conflicts to benefits.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Nat Rev Genet 2017
439
22

Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing.
Elena Helman, Michael S Lawrence, Chip Stewart, Carrie Sougnez, Gad Getz, Matthew Meyerson. Genome Res 2014
125
22

Long interspersed element-1 protein expression is a hallmark of many human cancers.
Nemanja Rodić, Reema Sharma, Rajni Sharma, John Zampella, Lixin Dai, Martin S Taylor, Ralph H Hruban, Christine A Iacobuzio-Donahue, Anirban Maitra, Michael S Torbenson,[...]. Am J Pathol 2014
131
21

Ubiquitous L1 mosaicism in hippocampal neurons.
Kyle R Upton, Daniel J Gerhardt, J Samuel Jesuadian, Sandra R Richardson, Francisco J Sánchez-Luque, Gabriela O Bodea, Adam D Ewing, Carmen Salvador-Palomeque, Marjo S van der Knaap, Paul M Brennan,[...]. Cell 2015
178
20

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
936
19

Extensive somatic L1 retrotransposition in colorectal tumors.
Szilvia Solyom, Adam D Ewing, Eric P Rahrmann, Tara Doucet, Heather H Nelson, Michael B Burns, Reuben S Harris, David F Sigmon, Alex Casella, Bracha Erlanger,[...]. Genome Res 2012
172
18

The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology.
Eugene J Gardner, Vincent K Lam, Daniel N Harris, Nelson T Chuang, Emma C Scott, W Stephen Pittard, Ryan E Mills, Scott E Devine. Genome Res 2017
96
17

LINE-mediated retrotransposition of marked Alu sequences.
Marie Dewannieux, Cécile Esnault, Thierry Heidmann. Nat Genet 2003
672
17

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain.
Gilad D Evrony, Xuyu Cai, Eunjung Lee, L Benjamin Hills, Princess C Elhosary, Hillel S Lehmann, J J Parker, Kutay D Atabay, Edward C Gilmore, Annapurna Poduri,[...]. Cell 2012
322
17

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
Bernardo Rodriguez-Martin, Eva G Alvarez, Adrian Baez-Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester, Martin Santamarina, Young Seok Ju, Javier Temes, Daniel Garcia-Souto,[...]. Nat Genet 2020
68
25

High frequency retrotransposition in cultured mammalian cells.
J V Moran, S E Holmes, T P Naas, R J DeBerardinis, J D Boeke, H H Kazazian. Cell 1996
727
16

L1 retrotransposition in human neural progenitor cells.
Nicole G Coufal, José L Garcia-Perez, Grace E Peng, Gene W Yeo, Yangling Mu, Michael T Lovci, Maria Morell, K Sue O'Shea, John V Moran, Fred H Gage. Nature 2009
519
16

Mobile DNA in Health and Disease.
Haig H Kazazian, John V Moran. N Engl J Med 2017
127
16


Repetitive elements may comprise over two-thirds of the human genome.
A P Jason de Koning, Wanjun Gu, Todd A Castoe, Mark A Batzer, David D Pollock. PLoS Genet 2011
577
15

Restricting retrotransposons: a review.
John L Goodier. Mob DNA 2016
171
15

Human transposon insertion profiling: Analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer.
Zuojian Tang, Jared P Steranka, Sisi Ma, Mark Grivainis, Nemanja Rodić, Cheng Ran Lisa Huang, Ie-Ming Shih, Tian-Li Wang, Jef D Boeke, David Fenyö,[...]. Proc Natl Acad Sci U S A 2017
47
29


LINE-1 elements in structural variation and disease.
Christine R Beck, José Luis Garcia-Perez, Richard M Badge, John V Moran. Annu Rev Genomics Hum Genet 2011
310
14

Resolving rates of mutation in the brain using single-neuron genomics.
Gilad D Evrony, Eunjung Lee, Peter J Park, Christopher A Walsh. Elife 2016
89
15

Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer.
Y Miki, I Nishisho, A Horii, Y Miyoshi, J Utsunomiya, K W Kinzler, B Vogelstein, Y Nakamura. Cancer Res 1992
402
13

The human LINE-1 retrotransposon creates DNA double-strand breaks.
Stephen L Gasior, Timothy P Wakeman, Bo Xu, Prescott L Deininger. J Mol Biol 2006
278
13

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
13

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.
Frank M J Jacobs, David Greenberg, Ngan Nguyen, Maximilian Haeussler, Adam D Ewing, Sol Katzman, Benedict Paten, Sofie R Salama, David Haussler. Nature 2014
225
13

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition.
Alysson R Muotri, Vi T Chu, Maria C N Marchetto, Wei Deng, John V Moran, Fred H Gage. Nature 2005
590
13

Which transposable elements are active in the human genome?
Ryan E Mills, E Andrew Bennett, Rebecca C Iskow, Scott E Devine. Trends Genet 2007
271
13


Active human retrotransposons: variation and disease.
Dustin C Hancks, Haig H Kazazian. Curr Opin Genet Dev 2012
362
13

LINE-1 expression and retrotransposition in Barrett's esophagus and esophageal carcinoma.
Tara T Doucet-O'Hare, Nemanja Rodić, Reema Sharma, Isha Darbari, Gabriela Abril, Jungbin A Choi, Ji Young Ahn, Yulan Cheng, Robert A Anders, Kathleen H Burns,[...]. Proc Natl Acad Sci U S A 2015
79
16

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
921
12

A comprehensive map of mobile element insertion polymorphisms in humans.
Chip Stewart, Deniz Kural, Michael P Strömberg, Jerilyn A Walker, Miriam K Konkel, Adrian M Stütz, Alexander E Urban, Fabian Grubert, Hugo Y K Lam, Wan-Ping Lee,[...]. PLoS Genet 2011
197
12

Regulatory evolution of innate immunity through co-option of endogenous retroviruses.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Science 2016
344
12

Somatic retrotransposition alters the genetic landscape of the human brain.
J Kenneth Baillie, Mark W Barnett, Kyle R Upton, Daniel J Gerhardt, Todd A Richmond, Fioravante De Sapio, Paul M Brennan, Patrizia Rizzu, Sarah Smith, Mark Fell,[...]. Nature 2011
432
12

L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis.
Stephanie N Schauer, Patricia E Carreira, Ruchi Shukla, Daniel J Gerhardt, Patricia Gerdes, Francisco J Sanchez-Luque, Paola Nicoli, Michaela Kindlova, Serena Ghisletti, Alexandre Dos Santos,[...]. Genome Res 2018
38
31

Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators.
Nian Liu, Cameron H Lee, Tomek Swigut, Edward Grow, Bo Gu, Michael C Bassik, Joanna Wysocka. Nature 2018
101
12

Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man.
H H Kazazian, C Wong, H Youssoufian, A F Scott, D G Phillips, S E Antonarakis. Nature 1988
637
12

The Role of Somatic L1 Retrotransposition in Human Cancers.
Emma C Scott, Scott E Devine. Viruses 2017
42
28

The Landscape of L1 Retrotransposons in the Human Genome Is Shaped by Pre-insertion Sequence Biases and Post-insertion Selection.
Tania Sultana, Dominic van Essen, Oliver Siol, Marc Bailly-Bechet, Claude Philippe, Amal Zine El Aabidine, Léo Pioger, Pilvi Nigumann, Simona Saccani, Jean-Christophe Andrau,[...]. Mol Cell 2019
42
28

Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci.
Claude Philippe, Dulce B Vargas-Landin, Aurélien J Doucet, Dominic van Essen, Jorge Vera-Otarola, Monika Kuciak, Antoine Corbin, Pilvi Nigumann, Gaël Cristofari. Elife 2016
66
16

L1 retrotransposition in neurons is modulated by MeCP2.
Alysson R Muotri, Maria C N Marchetto, Nicole G Coufal, Ruth Oefner, Gene Yeo, Kinichi Nakashima, Fred H Gage. Nature 2010
399
11

Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma.
Nemanja Rodić, Jared P Steranka, Alvin Makohon-Moore, Allison Moyer, Peilin Shen, Reema Sharma, Zachary A Kohutek, Cheng Ran Huang, Daniel Ahn, Paolo Mita,[...]. Nat Med 2015
78
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.