A citation-based method for searching scientific literature

Andreas Mayer, Martin Heidemann, Michael Lidschreiber, Amelie Schreieck, Mai Sun, Corinna Hintermair, Elisabeth Kremmer, Dirk Eick, Patrick Cramer. Science 2012
Times Cited: 180







List of co-cited articles
1361 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The RNA polymerase II carboxy-terminal domain (CTD) code.
Dirk Eick, Matthias Geyer. Chem Rev 2013
270
51

Uniform transitions of the general RNA polymerase II transcription complex.
Andreas Mayer, Michael Lidschreiber, Matthias Siebert, Kristin Leike, Johannes Söding, Patrick Cramer. Nat Struct Mol Biol 2010
337
37


Threonine-4 of mammalian RNA polymerase II CTD is targeted by Polo-like kinase 3 and required for transcriptional elongation.
Corinna Hintermair, Martin Heidemann, Frederic Koch, Nicolas Descostes, Marta Gut, Ivo Gut, Romain Fenouil, Pierre Ferrier, Andrew Flatley, Elisabeth Kremmer,[...]. EMBO J 2012
104
32

Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells.
Nicolas Descostes, Martin Heidemann, Lionel Spinelli, Roland Schüller, Muhammad Ahmad Maqbool, Romain Fenouil, Frederic Koch, Charlène Innocenti, Marta Gut, Ivo Gut,[...]. Elife 2014
57
52




Serine-7 of the RNA polymerase II CTD is specifically required for snRNA gene expression.
Sylvain Egloff, Dawn O'Reilly, Rob D Chapman, Alice Taylor, Katrin Tanzhaus, Laura Pitts, Dirk Eick, Shona Murphy. Science 2007
201
27

Direct Analysis of Phosphorylation Sites on the Rpb1 C-Terminal Domain of RNA Polymerase II.
Hyunsuk Suh, Scott B Ficarro, Un-Beom Kang, Yujin Chun, Jarrod A Marto, Stephen Buratowski. Mol Cell 2016
72
37

The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain.
Lidia Vasiljeva, Minkyu Kim, Hannes Mutschler, Stephen Buratowski, Anton Meinhart. Nat Struct Mol Biol 2008
210
26

Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain.
Bradley M Lunde, Steve L Reichow, Minkyu Kim, Hyunsuk Suh, Thomas C Leeper, Fan Yang, Hannes Mutschler, Stephen Buratowski, Anton Meinhart, Gabriele Varani. Nat Struct Mol Biol 2010
105
26

RNAP II CTD tyrosine 1 performs diverse functions in vertebrate cells.
Jing-Ping Hsin, Wencheng Li, Mainul Hoque, Bin Tian, James L Manley. Elife 2014
33
78

Heptad-Specific Phosphorylation of RNA Polymerase II CTD.
Roland Schüller, Ignasi Forné, Tobias Straub, Amelie Schreieck, Yves Texier, Nilay Shah, Tim-Michael Decker, Patrick Cramer, Axel Imhof, Dirk Eick. Mol Cell 2016
93
27

A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes.
Alain R Bataille, Célia Jeronimo, Pierre-Étienne Jacques, Louise Laramée, Marie-Ève Fortin, Audrey Forest, Maxime Bergeron, Steven D Hanes, François Robert. Mol Cell 2012
163
25

Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1.
Karel Kubicek, Hana Cerna, Peter Holub, Josef Pasulka, Dominika Hrossova, Frank Loehr, Ctirad Hofr, Stepanka Vanacova, Richard Stefl. Genes Dev 2012
79
29

Comprehensive RNA Polymerase II Interactomes Reveal Distinct and Varied Roles for Each Phospho-CTD Residue.
Kevin M Harlen, Kristine L Trotta, Erin E Smith, Mohammad M Mosaheb, Stephen M Fuchs, L Stirling Churchman. Cell Rep 2016
79
29

Chemical-genomic dissection of the CTD code.
Joshua R Tietjen, David W Zhang, Juan B Rodríguez-Molina, Brent E White, Md Sohail Akhtar, Martin Heidemann, Xin Li, Rob D Chapman, Kevan Shokat, Sündüz Keles,[...]. Nat Struct Mol Biol 2010
117
22

The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.
Minkyu Kim, Nevan J Krogan, Lidia Vasiljeva, Oliver J Rando, Eduard Nedea, Jack F Greenblatt, Stephen Buratowski. Nature 2004
368
21

RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7.
Amelie Schreieck, Ashley D Easter, Stefanie Etzold, Katrin Wiederhold, Michael Lidschreiber, Patrick Cramer, Lori A Passmore. Nat Struct Mol Biol 2014
53
39


The CTD code.
Stephen Buratowski. Nat Struct Biol 2003
254
21

Transcribing RNA polymerase II is phosphorylated at CTD residue serine-7.
Rob D Chapman, Martin Heidemann, Thomas K Albert, Reinhard Mailhammer, Andrew Flatley, Michael Meisterernst, Elisabeth Kremmer, Dirk Eick. Science 2007
238
21


Gene-specific RNA polymerase II phosphorylation and the CTD code.
Hyunmin Kim, Benjamin Erickson, Weifei Luo, David Seward, Joel H Graber, David D Pollock, Paul C Megee, David L Bentley. Nat Struct Mol Biol 2010
173
19


Ssu72 Is an RNA polymerase II CTD phosphatase.
Shankarling Krishnamurthy, Xiaoyuan He, Mariela Reyes-Reyes, Claire Moore, Michael Hampsey. Mol Cell 2004
179
19

Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription.
Martin Heidemann, Corinna Hintermair, Kirsten Voß, Dirk Eick. Biochim Biophys Acta 2013
183
19

The writers, readers, and functions of the RNA polymerase II C-terminal domain code.
Célia Jeronimo, Alain R Bataille, François Robert. Chem Rev 2013
78
24

The pol II CTD: new twists in the tail.
Justyna Zaborowska, Sylvain Egloff, Shona Murphy. Nat Struct Mol Biol 2016
127
19



Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing.
Takayuki Nojima, Tomás Gomes, Ana Rita Fialho Grosso, Hiroshi Kimura, Michael J Dye, Somdutta Dhir, Maria Carmo-Fonseca, Nicholas J Proudfoot. Cell 2015
310
18

Transcriptome surveillance by selective termination of noncoding RNA synthesis.
Daniel Schulz, Bjoern Schwalb, Anja Kiesel, Carlo Baejen, Phillipp Torkler, Julien Gagneur, Johannes Soeding, Patrick Cramer. Cell 2013
144
17

Ser7 phosphorylation of the CTD recruits the RPAP2 Ser5 phosphatase to snRNA genes.
Sylvain Egloff, Justyna Zaborowska, Clélia Laitem, Tamás Kiss, Shona Murphy. Mol Cell 2012
91
18

RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation.
Zuyao Ni, Chao Xu, Xinghua Guo, Gerald O Hunter, Olga V Kuznetsova, Wolfram Tempel, Edyta Marcon, Guoqing Zhong, Hongbo Guo, Wei-Hung William Kuo,[...]. Nat Struct Mol Biol 2014
52
32


TFIIH kinase places bivalent marks on the carboxy-terminal domain of RNA polymerase II.
Md Sohail Akhtar, Martin Heidemann, Joshua R Tietjen, David W Zhang, Rob D Chapman, Dirk Eick, Aseem Z Ansari. Mol Cell 2009
208
16

Ssu72 phosphatase-dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination.
David W Zhang, Amber L Mosley, Sreenivasa R Ramisetty, Juan B Rodríguez-Molina, Michael P Washburn, Aseem Z Ansari. J Biol Chem 2012
81
19

Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation.
Amber L Mosley, Samantha G Pattenden, Michael Carey, Swaminathan Venkatesh, Joshua M Gilmore, Laurence Florens, Jerry L Workman, Michael P Washburn. Mol Cell 2009
110
16

Serine-7 but not serine-5 phosphorylation primes RNA polymerase II CTD for P-TEFb recognition.
Nadine Czudnochowski, Christian A Bösken, Matthias Geyer. Nat Commun 2012
124
16


Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II.
David Baillat, Mohamed-Ali Hakimi, Anders M Näär, Ali Shilatifard, Neil Cooch, Ramin Shiekhattar. Cell 2005
325
15

Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1.
Tyler J Creamer, Miranda M Darby, Nuttara Jamonnak, Paul Schaughency, Haiping Hao, Sarah J Wheelan, Jeffry L Corden. PLoS Genet 2011
109
15

CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1.
Bartlomiej Bartkowiak, Pengda Liu, Hemali P Phatnani, Nicholas J Fuda, Jeffrey J Cooper, David H Price, Karen Adelman, John T Lis, Arno L Greenleaf. Genes Dev 2010
264
15

The C-terminal domain of RNA polymerase II is modified by site-specific methylation.
Robert J Sims, Luis Alejandro Rojas, David B Beck, Roberto Bonasio, Roland Schüller, William J Drury, Dirk Eick, Danny Reinberg. Science 2011
150
15

Molecular evolution of the RNA polymerase II CTD.
Rob D Chapman, Martin Heidemann, Corinna Hintermair, Dirk Eick. Trends Genet 2008
109
15

Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.
John T Arigo, Daniel E Eyler, Kristina L Carroll, Jeffry L Corden. Mol Cell 2006
206
14


Phosphorylation of the yeast Rpb1 C-terminal domain at serines 2, 5, and 7.
Minkyu Kim, Hyunsuk Suh, Eun-Jung Cho, Stephen Buratowski. J Biol Chem 2009
106
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.