A citation-based method for searching scientific literature

Taiji Tsunemi, Travis D Ashe, Bradley E Morrison, Kathryn R Soriano, Jonathan Au, Ruben A Vázquez Roque, Eduardo R Lazarowski, Vincent A Damian, Eliezer Masliah, Albert R La Spada. Sci Transl Med 2012
Times Cited: 299







List of co-cited articles
1944 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A gene network regulating lysosomal biogenesis and function.
Marco Sardiello, Michela Palmieri, Alberto di Ronza, Diego Luis Medina, Marta Valenza, Vincenzo Alessandro Gennarino, Chiara Di Malta, Francesca Donaudy, Valerio Embrione, Roman S Polishchuk,[...]. Science 2009
48

TFEB links autophagy to lysosomal biogenesis.
Carmine Settembre, Chiara Di Malta, Vinicia Assunta Polito, Moises Garcia Arencibia, Francesco Vetrini, Serkan Erdin, Serpil Uckac Erdin, Tuong Huynh, Diego Medina, Pasqualina Colella,[...]. Science 2011
45

TFEB-mediated autophagy rescues midbrain dopamine neurons from α-synuclein toxicity.
Mickael Decressac, Bengt Mattsson, Pia Weikop, Martin Lundblad, Johan Jakobsson, Anders Björklund. Proc Natl Acad Sci U S A 2013
438
39

Selective clearance of aberrant tau proteins and rescue of neurotoxicity by transcription factor EB.
Vinicia A Polito, Hongmei Li, Heidi Martini-Stoica, Baiping Wang, Li Yang, Yin Xu, Daniel B Swartzlander, Michela Palmieri, Alberto di Ronza, Virginia M-Y Lee,[...]. EMBO Mol Med 2014
204
34

Lysosomal calcium signalling regulates autophagy through calcineurin and ​TFEB.
Diego L Medina, Simone Di Paola, Ivana Peluso, Andrea Armani, Diego De Stefani, Rossella Venditti, Sandro Montefusco, Anna Scotto-Rosato, Carolina Prezioso, Alison Forrester,[...]. Nat Cell Biol 2015
668
30

A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB.
Carmine Settembre, Roberto Zoncu, Diego L Medina, Francesco Vetrini, Serkan Erdin, SerpilUckac Erdin, Tuong Huynh, Mathieu Ferron, Gerard Karsenty, Michel C Vellard,[...]. EMBO J 2012
29

TFEB controls cellular lipid metabolism through a starvation-induced autoregulatory loop.
Carmine Settembre, Rossella De Cegli, Gelsomina Mansueto, Pradip K Saha, Francesco Vetrini, Orane Visvikis, Tuong Huynh, Annamaria Carissimo, Donna Palmer, Tiemo Jürgen Klisch,[...]. Nat Cell Biol 2013
558
27

The transcription factor TFEB links mTORC1 signaling to transcriptional control of lysosome homeostasis.
Agnes Roczniak-Ferguson, Constance S Petit, Florian Froehlich, Sharon Qian, Jennifer Ky, Brittany Angarola, Tobias C Walther, Shawn M Ferguson. Sci Signal 2012
728
26

MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB.
Jose A Martina, Yong Chen, Marjan Gucek, Rosa Puertollano. Autophagy 2012
662
24

Characterization of the CLEAR network reveals an integrated control of cellular clearance pathways.
Michela Palmieri, Soren Impey, Hyojin Kang, Alberto di Ronza, Carl Pelz, Marco Sardiello, Andrea Ballabio. Hum Mol Genet 2011
514
23

Neuronal-Targeted TFEB Accelerates Lysosomal Degradation of APP, Reducing Aβ Generation and Amyloid Plaque Pathogenesis.
Qingli Xiao, Ping Yan, Xiucui Ma, Haiyan Liu, Ronaldo Perez, Alec Zhu, Ernesto Gonzales, Danielle L Tripoli, Leah Czerniewski, Andrea Ballabio,[...]. J Neurosci 2015
128
21

TFEB at a glance.
Gennaro Napolitano, Andrea Ballabio. J Cell Sci 2016
353
20

Inhibition of mTOR induces autophagy and reduces toxicity of polyglutamine expansions in fly and mouse models of Huntington disease.
Brinda Ravikumar, Coralie Vacher, Zdenek Berger, Janet E Davies, Shouqing Luo, Lourdes G Oroz, Francesco Scaravilli, Douglas F Easton, Rainer Duden, Cahir J O'Kane,[...]. Nat Genet 2004
19

Transcriptional activation of lysosomal exocytosis promotes cellular clearance.
Diego L Medina, Alessandro Fraldi, Valentina Bouche, Fabio Annunziata, Gelsomina Mansueto, Carmine Spampanato, Claudia Puri, Antonella Pignata, Jose A Martina, Marco Sardiello,[...]. Dev Cell 2011
416
19

Enhancing astrocytic lysosome biogenesis facilitates Aβ clearance and attenuates amyloid plaque pathogenesis.
Qingli Xiao, Ping Yan, Xiucui Ma, Haiyan Liu, Ronaldo Perez, Alec Zhu, Ernesto Gonzales, Jack M Burchett, Dorothy R Schuler, John R Cirrito,[...]. J Neurosci 2014
145
18

MiT/TFE transcription factors are activated during mitophagy downstream of Parkin and Atg5.
Catherine L Nezich, Chunxin Wang, Adam I Fogel, Richard J Youle. J Cell Biol 2015
167
17

The Autophagy-Lysosomal Pathway in Neurodegeneration: A TFEB Perspective.
Heidi Martini-Stoica, Yin Xu, Andrea Ballabio, Hui Zheng. Trends Neurosci 2016
177
17

Pathogenic lysosomal depletion in Parkinson's disease.
Benjamin Dehay, Jordi Bové, Natalia Rodríguez-Muela, Celine Perier, Ariadna Recasens, Patricia Boya, Miquel Vila. J Neurosci 2010
499
16

Protein kinase C controls lysosome biogenesis independently of mTORC1.
Yang Li, Meng Xu, Xiao Ding, Chen Yan, Zhiqin Song, Lianwan Chen, Xiahe Huang, Xin Wang, Youli Jian, Guihua Tang,[...]. Nat Cell Biol 2016
178
16

The nutrient-responsive transcription factor TFE3 promotes autophagy, lysosomal biogenesis, and clearance of cellular debris.
José A Martina, Heba I Diab, Li Lishu, Lim Jeong-A, Simona Patange, Nina Raben, Rosa Puertollano. Sci Signal 2014
335
15

Transcription factor EB (TFEB) is a new therapeutic target for Pompe disease.
Carmine Spampanato, Erin Feeney, Lishu Li, Monica Cardone, Jeong-A Lim, Fabio Annunziata, Hossein Zare, Roman Polishchuk, Rosa Puertollano, Giancarlo Parenti,[...]. EMBO Mol Med 2013
210
15

Suppression of reactive oxygen species and neurodegeneration by the PGC-1 transcriptional coactivators.
Julie St-Pierre, Stavit Drori, Marc Uldry, Jessica M Silvaggi, James Rhee, Sibylle Jäger, Christoph Handschin, Kangni Zheng, Jiandie Lin, Wenli Yang,[...]. Cell 2006
15

Lysosomal proteolysis and autophagy require presenilin 1 and are disrupted by Alzheimer-related PS1 mutations.
Ju-Hyun Lee, W Haung Yu, Asok Kumar, Sooyeon Lee, Panaiyur S Mohan, Corrinne M Peterhoff, Devin M Wolfe, Marta Martinez-Vicente, Ashish C Massey, Guy Sovak,[...]. Cell 2010
759
14

Genetic and chemical activation of TFEB mediates clearance of aggregated α-synuclein.
Kiri Kilpatrick, Yimeng Zeng, Tommy Hancock, Laura Segatori. PLoS One 2015
80
17

mTORC1-independent TFEB activation via Akt inhibition promotes cellular clearance in neurodegenerative storage diseases.
Michela Palmieri, Rituraj Pal, Hemanth R Nelvagal, Parisa Lotfi, Gary R Stinnett, Michelle L Seymour, Arindam Chaudhury, Lakshya Bajaj, Vitaliy V Bondar, Laura Bremner,[...]. Nat Commun 2017
225
14

Transcriptional repression of PGC-1alpha by mutant huntingtin leads to mitochondrial dysfunction and neurodegeneration.
Libin Cui, Hyunkyung Jeong, Fran Borovecki, Christopher N Parkhurst, Naoko Tanese, Dimitri Krainc. Cell 2006
753
14

Loss of autophagy in the central nervous system causes neurodegeneration in mice.
Masaaki Komatsu, Satoshi Waguri, Tomoki Chiba, Shigeo Murata, Jun-ichi Iwata, Isei Tanida, Takashi Ueno, Masato Koike, Yasuo Uchiyama, Eiki Kominami,[...]. Nature 2006
14

Suppression of basal autophagy in neural cells causes neurodegenerative disease in mice.
Taichi Hara, Kenji Nakamura, Makoto Matsui, Akitsugu Yamamoto, Yohko Nakahara, Rika Suzuki-Migishima, Minesuke Yokoyama, Kenji Mishima, Ichiro Saito, Hideyuki Okano,[...]. Nature 2006
14

Extensive involvement of autophagy in Alzheimer disease: an immuno-electron microscopy study.
Ralph A Nixon, Jerzy Wegiel, Asok Kumar, Wai Haung Yu, Corrinne Peterhoff, Anne Cataldo, Ana Maria Cuervo. J Neuropathol Exp Neurol 2005
13

Aggregate-prone proteins with polyglutamine and polyalanine expansions are degraded by autophagy.
Brinda Ravikumar, Rainer Duden, David C Rubinsztein. Hum Mol Genet 2002
837
13



A novel curcumin analog binds to and activates TFEB in vitro and in vivo independent of MTOR inhibition.
Ju-Xian Song, Yue-Ru Sun, Ivana Peluso, Yu Zeng, Xing Yu, Jia-Hong Lu, Zheng Xu, Ming-Zhong Wang, Liang-Feng Liu, Ying-Yu Huang,[...]. Autophagy 2016
84
14

Cargo recognition failure is responsible for inefficient autophagy in Huntington's disease.
Marta Martinez-Vicente, Zsolt Talloczy, Esther Wong, Guomei Tang, Hiroshi Koga, Susmita Kaushik, Rosa de Vries, Esperanza Arias, Spike Harris, David Sulzer,[...]. Nat Neurosci 2010
551
12

The autophagy-related protein beclin 1 shows reduced expression in early Alzheimer disease and regulates amyloid beta accumulation in mice.
Fiona Pickford, Eliezer Masliah, Markus Britschgi, Kurt Lucin, Ramya Narasimhan, Philipp A Jaeger, Scott Small, Brian Spencer, Edward Rockenstein, Beth Levine,[...]. J Clin Invest 2008
777
11

Potential function for the Huntingtin protein as a scaffold for selective autophagy.
Joseph Ochaba, Tamás Lukacsovich, George Csikos, Shuqiu Zheng, Julia Margulis, Lisa Salazar, Kai Mao, Alice L Lau, Sylvia Y Yeung, Sandrine Humbert,[...]. Proc Natl Acad Sci U S A 2014
165
11

Huntingtin functions as a scaffold for selective macroautophagy.
Yan-Ning Rui, Zhen Xu, Bindi Patel, Zhihua Chen, Dongsheng Chen, Antonio Tito, Gabriela David, Yamin Sun, Erin F Stimming, Hugo J Bellen,[...]. Nat Cell Biol 2015
247
11


TFEB and TFE3: Linking Lysosomes to Cellular Adaptation to Stress.
Nina Raben, Rosa Puertollano. Annu Rev Cell Dev Biol 2016
189
11

Polyglutamine-expanded androgen receptor interferes with TFEB to elicit autophagy defects in SBMA.
Constanza J Cortes, Helen C Miranda, Harald Frankowski, Yakup Batlevi, Jessica E Young, Amy Le, Nishi Ivanov, Bryce L Sopher, Cassiano Carromeu, Alysson R Muotri,[...]. Nat Neurosci 2014
107
10

Deacetylation of TFEB promotes fibrillar Aβ degradation by upregulating lysosomal biogenesis in microglia.
Jintao Bao, Liangjun Zheng, Qi Zhang, Xinya Li, Xuefei Zhang, Zeyang Li, Xue Bai, Zhong Zhang, Wei Huo, Xuyang Zhao,[...]. Protein Cell 2016
58
17

Impaired degradation of mutant alpha-synuclein by chaperone-mediated autophagy.
Ana Maria Cuervo, Leonidas Stefanis, Ross Fredenburg, Peter T Lansbury, David Sulzer. Science 2004
10

AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
10

TFEB and TFE3 are novel components of the integrated stress response.
José A Martina, Heba I Diab, Owen A Brady, Rosa Puertollano. EMBO J 2016
137
10

Signals from the lysosome: a control centre for cellular clearance and energy metabolism.
Carmine Settembre, Alessandro Fraldi, Diego L Medina, Andrea Ballabio. Nat Rev Mol Cell Biol 2013
906
10

The TFEB orthologue HLH-30 regulates autophagy and modulates longevity in Caenorhabditis elegans.
Louis R Lapierre, C Daniel De Magalhaes Filho, Philip R McQuary, Chu-Chiao Chu, Orane Visvikis, Jessica T Chang, Sara Gelino, Binnan Ong, Andrew E Davis, Javier E Irazoqui,[...]. Nat Commun 2013
256
10

Trehalose induces autophagy via lysosomal-mediated TFEB activation in models of motoneuron degeneration.
Paola Rusmini, Katia Cortese, Valeria Crippa, Riccardo Cristofani, Maria Elena Cicardi, Veronica Ferrari, Giulia Vezzoli, Barbara Tedesco, Marco Meroni, Elio Messi,[...]. Autophagy 2019
131
10

Autophagy induction and autophagosome clearance in neurons: relationship to autophagic pathology in Alzheimer's disease.
Barry Boland, Asok Kumar, Sooyeon Lee, Frances M Platt, Jerzy Wegiel, W Haung Yu, Ralph A Nixon. J Neurosci 2008
763
9

Rapamycin alleviates toxicity of different aggregate-prone proteins.
Zdenek Berger, Brinda Ravikumar, Fiona M Menzies, Lourdes Garcia Oroz, Benjamin R Underwood, Menelas N Pangalos, Ina Schmitt, Ullrich Wullner, Bernd O Evert, Cahir J O'Kane,[...]. Hum Mol Genet 2006
497
9



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.