A citation-based method for searching scientific literature

Bernd Bodenmiller, Eli R Zunder, Rachel Finck, Tiffany J Chen, Erica S Savig, Robert V Bruggner, Erin F Simonds, Sean C Bendall, Karen Sachs, Peter O Krutzik, Garry P Nolan. Nat Biotechnol 2012
Times Cited: 356







List of co-cited articles
681 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.
Sean C Bendall, Erin F Simonds, Peng Qiu, El-ad D Amir, Peter O Krutzik, Rachel Finck, Robert V Bruggner, Rachel Melamed, Angelica Trejo, Olga I Ornatsky,[...]. Science 2011
49

Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm.
Eli R Zunder, Rachel Finck, Gregory K Behbehani, El-Ad D Amir, Smita Krishnaswamy, Veronica D Gonzalez, Cynthia G Lorang, Zach Bjornson, Matthew H Spitzer, Bernd Bodenmiller,[...]. Nat Protoc 2015
314
33

Normalization of mass cytometry data with bead standards.
Rachel Finck, Erin F Simonds, Astraea Jager, Smita Krishnaswamy, Karen Sachs, Wendy Fantl, Dana Pe'er, Garry P Nolan, Sean C Bendall. Cytometry A 2013
429
28

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis.
Jacob H Levine, Erin F Simonds, Sean C Bendall, Kara L Davis, El-ad D Amir, Michelle D Tadmor, Oren Litvin, Harris G Fienberg, Astraea Jager, Eli R Zunder,[...]. Cell 2015
955
27

Mass Cytometry: Single Cells, Many Features.
Matthew H Spitzer, Garry P Nolan. Cell 2016
639
27

Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry.
Dmitry R Bandura, Vladimir I Baranov, Olga I Ornatsky, Alexei Antonov, Robert Kinach, Xudong Lou, Serguei Pavlov, Sergey Vorobiev, John E Dick, Scott D Tanner. Anal Chem 2009
747
25

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry.
Charlotte Giesen, Hao A O Wang, Denis Schapiro, Nevena Zivanovic, Andrea Jacobs, Bodo Hattendorf, Peter J Schüffler, Daniel Grolimund, Joachim M Buhmann, Simone Brandt,[...]. Nat Methods 2014
862
24

Single-cell mass cytometry adapted to measurements of the cell cycle.
Gregory K Behbehani, Sean C Bendall, Matthew R Clutter, Wendy J Fantl, Garry P Nolan. Cytometry A 2012
155
21

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia.
El-ad David Amir, Kara L Davis, Michelle D Tadmor, Erin F Simonds, Jacob H Levine, Sean C Bendall, Daniel K Shenfeld, Smita Krishnaswamy, Garry P Nolan, Dana Pe'er. Nat Biotechnol 2013
21

Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development.
Sean C Bendall, Kara L Davis, El-Ad David Amir, Michelle D Tadmor, Erin F Simonds, Tiffany J Chen, Daniel K Shenfeld, Garry P Nolan, Dana Pe'er. Cell 2014
543
20

FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data.
Sofie Van Gassen, Britt Callebaut, Mary J Van Helden, Bart N Lambrecht, Piet Demeester, Tom Dhaene, Yvan Saeys. Cytometry A 2015
722
20

A deep profiler's guide to cytometry.
Sean C Bendall, Garry P Nolan, Mario Roederer, Pratip K Chattopadhyay. Trends Immunol 2012
434
20

Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry.
Stéphane Chevrier, Helena L Crowell, Vito R T Zanotelli, Stefanie Engler, Mark D Robinson, Bernd Bodenmiller. Cell Syst 2018
149
18

Barcoding of live human peripheral blood mononuclear cells for multiplexed mass cytometry.
Henrik E Mei, Michael D Leipold, Axel Ronald Schulz, Cariad Chester, Holden T Maecker. J Immunol 2015
109
18

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE.
Peng Qiu, Erin F Simonds, Sean C Bendall, Kenneth D Gibbs, Robert V Bruggner, Michael D Linderman, Karen Sachs, Garry P Nolan, Sylvia K Plevritis. Nat Biotechnol 2011
639
16

Multiplexed ion beam imaging of human breast tumors.
Michael Angelo, Sean C Bendall, Rachel Finck, Matthew B Hale, Chuck Hitzman, Alexander D Borowsky, Richard M Levenson, John B Lowe, Scot D Liu, Shuchun Zhao,[...]. Nat Med 2014
555
15

Metal-isotope-tagged monoclonal antibodies for high-dimensional mass cytometry.
Guojun Han, Matthew H Spitzer, Sean C Bendall, Wendy J Fantl, Garry P Nolan. Nat Protoc 2018
112
15

An Immune Atlas of Clear Cell Renal Cell Carcinoma.
Stéphane Chevrier, Jacob Harrison Levine, Vito Riccardo Tomaso Zanotelli, Karina Silina, Daniel Schulz, Marina Bacac, Carola Hermine Ries, Laurie Ailles, Michael Alexander Spencer Jewett, Holger Moch,[...]. Cell 2017
552
14

Systems biology. Conditional density-based analysis of T cell signaling in single-cell data.
Smita Krishnaswamy, Matthew H Spitzer, Michael Mingueneau, Sean C Bendall, Oren Litvin, Erica Stone, Dana Pe'er, Garry P Nolan. Science 2014
113
14

Automated identification of stratifying signatures in cellular subpopulations.
Robert V Bruggner, Bernd Bodenmiller, David L Dill, Robert J Tibshirani, Garry P Nolan. Proc Natl Acad Sci U S A 2014
276
13

Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
13

Highly multiplexed simultaneous detection of RNAs and proteins in single cells.
Andreas P Frei, Felice-Alessio Bava, Eli R Zunder, Elena W Y Hsieh, Shih-Yu Chen, Garry P Nolan, Pier Federico Gherardini. Nat Methods 2016
193
12

A platinum-based covalent viability reagent for single-cell mass cytometry.
Harris G Fienberg, Erin F Simonds, Wendy J Fantl, Garry P Nolan, Bernd Bodenmiller. Cytometry A 2012
148
12

Transient partial permeabilization with saponin enables cellular barcoding prior to surface marker staining.
Gregory K Behbehani, Colin Thom, Eli R Zunder, Rachel Finck, Brice Gaudilliere, Gabriela K Fragiadakis, Wendy J Fantl, Garry P Nolan. Cytometry A 2014
79
13

A Universal Live Cell Barcoding-Platform for Multiplexed Human Single Cell Analysis.
Felix J Hartmann, Erin F Simonds, Sean C Bendall. Sci Rep 2018
49
22


Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses.
Yonit Lavin, Soma Kobayashi, Andrew Leader, El-Ad David Amir, Naama Elefant, Camille Bigenwald, Romain Remark, Robert Sweeney, Christian D Becker, Jacob H Levine,[...]. Cell 2017
695
11

Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging.
Yury Goltsev, Nikolay Samusik, Julia Kennedy-Darling, Salil Bhate, Matthew Hale, Gustavo Vazquez, Sarah Black, Garry P Nolan. Cell 2018
464
11

Web-based analysis and publication of flow cytometry experiments.
Nikesh Kotecha, Peter O Krutzik, Jonathan M Irish. Curr Protoc Cytom 2010
329
11

Highly multiparametric analysis by mass cytometry.
Olga Ornatsky, Dmitry Bandura, Vladimir Baranov, Mark Nitz, Mitchell A Winnik, Scott Tanner. J Immunol Methods 2010
242
10

Mass cytometry panel optimization through the designed distribution of signal interference.
Chikara Takahashi, Amelia Au-Yeung, Franklin Fuh, Teresa Ramirez-Montagut, Chris Bolen, William Mathews, William E O'Gorman. Cytometry A 2017
45
22

Multiplexed quantification of proteins and transcripts in single cells.
Vanessa M Peterson, Kelvin Xi Zhang, Namit Kumar, Jerelyn Wong, Lixia Li, Douglas C Wilson, Renee Moore, Terrill K McClanahan, Svetlana Sadekova, Joel A Klappenbach. Nat Biotechnol 2017
412
10

Highly multiplexed imaging of single cells using a high-throughput cyclic immunofluorescence method.
Jia-Ren Lin, Mohammad Fallahi-Sichani, Peter K Sorger. Nat Commun 2015
264
10

Automated mapping of phenotype space with single-cell data.
Nikolay Samusik, Zinaida Good, Matthew H Spitzer, Kara L Davis, Garry P Nolan. Nat Methods 2016
177
9

Clinical recovery from surgery correlates with single-cell immune signatures.
Brice Gaudillière, Gabriela K Fragiadakis, Robert V Bruggner, Monica Nicolau, Rachel Finck, Martha Tingle, Julian Silva, Edward A Ganio, Christine G Yeh, William J Maloney,[...]. Sci Transl Med 2014
223
9

Dimensionality reduction for visualizing single-cell data using UMAP.
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
9

Single-cell mass cytometry for analysis of immune system functional states.
Zach B Bjornson, Garry P Nolan, Wendy J Fantl. Curr Opin Immunol 2013
134
9

High-content single-cell drug screening with phosphospecific flow cytometry.
Peter O Krutzik, Janelle M Crane, Matthew R Clutter, Garry P Nolan. Nat Chem Biol 2008
146
8

A CD45-based barcoding approach to multiplex mass-cytometry (CyTOF).
Liyun Lai, Raymond Ong, Juntao Li, Salvatore Albani. Cytometry A 2015
68
11

IMMUNOLOGY. An interactive reference framework for modeling a dynamic immune system.
Matthew H Spitzer, Pier Federico Gherardini, Gabriela K Fragiadakis, Nupur Bhattacharya, Robert T Yuan, Andrew N Hotson, Rachel Finck, Yaron Carmi, Eli R Zunder, Wendy J Fantl,[...]. Science 2015
151
8

Single cell analysis of human tissues and solid tumors with mass cytometry.
Nalin Leelatian, Deon B Doxie, Allison R Greenplate, Bret C Mobley, Jonathan M Lehman, Justine Sinnaeve, Rondi M Kauffmann, Jay A Werkhaven, Akshitkumar M Mistry, Kyle D Weaver,[...]. Cytometry B Clin Cytom 2017
68
11


Polymer-based elemental tags for sensitive bioassays.
Xudong Lou, Guohua Zhang, Isaac Herrera, Robert Kinach, Olga Ornatsky, Vladimir Baranov, Mark Nitz, Mitchell A Winnik. Angew Chem Int Ed Engl 2007
166
8


Enhanced multiplexing in mass cytometry using osmium and ruthenium tetroxide species.
Raúl Catena, Alaz Özcan, Nevena Zivanovic, Bernd Bodenmiller. Cytometry A 2016
29
27

Platinum-conjugated antibodies for application in mass cytometry.
Henrik E Mei, Michael D Leipold, Holden T Maecker. Cytometry A 2016
64
12

Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue.
Michael J Gerdes, Christopher J Sevinsky, Anup Sood, Sudeshna Adak, Musodiq O Bello, Alexander Bordwell, Ali Can, Alex Corwin, Sean Dinn, Robert J Filkins,[...]. Proc Natl Acad Sci U S A 2013
380
8

MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure.
Leeat Keren, Marc Bosse, Steve Thompson, Tyler Risom, Kausalia Vijayaragavan, Erin McCaffrey, Diana Marquez, Roshan Angoshtari, Noah F Greenwald, Harris Fienberg,[...]. Sci Adv 2019
110
8

Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells.
Zinaida Good, Luciene Borges, Nora Vivanco Gonzalez, Bita Sahaf, Nikolay Samusik, Robert Tibshirani, Garry P Nolan, Sean C Bendall. Nat Biotechnol 2019
30
26

Tellurium-based mass cytometry barcode for live and fixed cells.
Lisa M Willis, Hanuel Park, Michael W L Watson, Daniel Majonis, Jessica L Watson, Mark Nitz. Cytometry A 2018
11
72


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.