A citation-based method for searching scientific literature

Chunxiao Wu, Alexander W Wyatt, Andrew McPherson, Dong Lin, Brian J McConeghy, Fan Mo, Robert Shukin, Anna V Lapuk, Steven J M Jones, Yongjun Zhao, Marco A Marra, Martin E Gleave, Stanislav V Volik, Yuzhuo Wang, S Cenk Sahinalp, Colin C Collins. Genes Chromosomes Cancer 2012
Times Cited: 39







List of co-cited articles
334 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
64

Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations.
Tobias Rausch, David T W Jones, Marc Zapatka, Adrian M Stütz, Thomas Zichner, Joachim Weischenfeldt, Natalie Jäger, Marc Remke, David Shih, Paul A Northcott,[...]. Cell 2012
529
46

Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer.
Wigard P Kloosterman, Marlous Hoogstraat, Oscar Paling, Masoumeh Tavakoli-Yaraki, Ivo Renkens, Joost S Vermaat, Markus J van Roosmalen, Stef van Lieshout, Isaac J Nijman, Wijnand Roessingh,[...]. Genome Biol 2011
125
38

Punctuated evolution of prostate cancer genomes.
Sylvan C Baca, Davide Prandi, Michael S Lawrence, Juan Miguel Mosquera, Alessandro Romanel, Yotam Drier, Kyung Park, Naoki Kitabayashi, Theresa Y MacDonald, Mahmoud Ghandi,[...]. Cell 2013
737
38

Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes.
Jan J Molenaar, Jan Koster, Danny A Zwijnenburg, Peter van Sluis, Linda J Valentijn, Ida van der Ploeg, Mohamed Hamdi, Johan van Nes, Bart A Westerman, Jennemiek van Arkel,[...]. Nature 2012
566
35

The genomic complexity of primary human prostate cancer.
Michael F Berger, Michael S Lawrence, Francesca Demichelis, Yotam Drier, Kristian Cibulskis, Andrey Y Sivachenko, Andrea Sboner, Raquel Esgueva, Dorothee Pflueger, Carrie Sougnez,[...]. Nature 2011
873
33

Chromothripsis identifies a rare and aggressive entity among newly diagnosed multiple myeloma patients.
Florence Magrangeas, Hervé Avet-Loiseau, Nikhil C Munshi, Stéphane Minvielle. Blood 2011
128
33

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
Scott A Tomlins, Daniel R Rhodes, Sven Perner, Saravana M Dhanasekaran, Rohit Mehra, Xiao-Wei Sun, Sooryanarayana Varambally, Xuhong Cao, Joelle Tchinda, Rainer Kuefer,[...]. Science 2005
33

Subgroup-specific structural variation across 1,000 medulloblastoma genomes.
Paul A Northcott, David J H Shih, John Peacock, Livia Garzia, A Sorana Morrissy, Thomas Zichner, Adrian M Stütz, Andrey Korshunov, Jüri Reimand, Steven E Schumacher,[...]. Nature 2012
537
30

Chromothripsis and cancer: causes and consequences of chromosome shattering.
Josep V Forment, Abderrahmane Kaidi, Stephen P Jackson. Nat Rev Cancer 2012
223
30

DNA breaks and chromosome pulverization from errors in mitosis.
Karen Crasta, Neil J Ganem, Regina Dagher, Alexandra B Lantermann, Elena V Ivanova, Yunfeng Pan, Luigi Nezi, Alexei Protopopov, Dipanjan Chowdhury, David Pellman. Nature 2012
717
28

Criteria for inference of chromothripsis in cancer genomes.
Jan O Korbel, Peter J Campbell. Cell 2013
298
28

Integrative genomic profiling of human prostate cancer.
Barry S Taylor, Nikolaus Schultz, Haley Hieronymus, Anuradha Gopalan, Yonghong Xiao, Brett S Carver, Vivek K Arora, Poorvi Kaushik, Ethan Cerami, Boris Reva,[...]. Cancer Cell 2010
25


From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer.
Anna V Lapuk, Chunxiao Wu, Alexander W Wyatt, Andrew McPherson, Brian J McConeghy, Sonal Brahmbhatt, Fan Mo, Amina Zoubeidi, Shawn Anderson, Robert H Bell,[...]. J Pathol 2012
130
23

Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer.
Christopher E Barbieri, Sylvan C Baca, Michael S Lawrence, Francesca Demichelis, Mirjam Blattner, Jean-Philippe Theurillat, Thomas A White, Petar Stojanov, Eliezer Van Allen, Nicolas Stransky,[...]. Nat Genet 2012
957
23

Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline.
Wigard P Kloosterman, Victor Guryev, Mark van Roosmalen, Karen J Duran, Ewart de Bruijn, Saskia C M Bakker, Tom Letteboer, Bernadette van Nesselrooij, Ron Hochstenbach, Martin Poot,[...]. Hum Mol Genet 2011
204
20

Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements.
Pengfei Liu, Ayelet Erez, Sandesh C Sreenath Nagamani, Shweta U Dhar, Katarzyna E Kołodziejska, Avinash V Dharmadhikari, M Lance Cooper, Joanna Wiszniewska, Feng Zhang, Marjorie A Withers,[...]. Cell 2011
282
20

The impact of translocations and gene fusions on cancer causation.
Felix Mitelman, Bertil Johansson, Fredrik Mertens. Nat Rev Cancer 2007
840
17

The mutational landscape of lethal castration-resistant prostate cancer.
Catherine S Grasso, Yi-Mi Wu, Dan R Robinson, Xuhong Cao, Saravana M Dhanasekaran, Amjad P Khan, Michael J Quist, Xiaojun Jing, Robert J Lonigro, J Chad Brenner,[...]. Nature 2012
17

Integrative genomic analyses reveal an androgen-driven somatic alteration landscape in early-onset prostate cancer.
Joachim Weischenfeldt, Ronald Simon, Lars Feuerbach, Karin Schlangen, Dieter Weichenhan, Sarah Minner, Daniela Wuttig, Hans-Jörg Warnatz, Henning Stehr, Tobias Rausch,[...]. Cancer Cell 2013
239
17

Integrative clinical genomics of advanced prostate cancer.
Dan Robinson, Eliezer M Van Allen, Yi-Mi Wu, Nikolaus Schultz, Robert J Lonigro, Juan-Miguel Mosquera, Bruce Montgomery, Mary-Ellen Taplin, Colin C Pritchard, Gerhardt Attard,[...]. Cell 2015
17

Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer.
Chunru Lin, Liuqing Yang, Bogdan Tanasa, Kasey Hutt, Bong-gun Ju, Kenny Ohgi, Jie Zhang, David W Rose, Xiang-Dong Fu, Christopher K Glass,[...]. Cell 2009
423
15

Cancer genomes evolve by pulverizing single chromosomes.
Matthew Meyerson, David Pellman. Cell 2011
65
15

Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration.
Colby Chiang, Jessie C Jacobsen, Carl Ernst, Carrie Hanscom, Adrian Heilbut, Ian Blumenthal, Ryan E Mills, Andrew Kirby, Amelia M Lindgren, Skye R Rudiger,[...]. Nat Genet 2012
169
15


Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes.
Tae-Min Kim, Ruibin Xi, Lovelace J Luquette, Richard W Park, Mark D Johnson, Peter J Park. Genome Res 2013
101
15

Targeted next-generation sequencing of advanced prostate cancer identifies potential therapeutic targets and disease heterogeneity.
Himisha Beltran, Roman Yelensky, Garrett M Frampton, Kyung Park, Sean R Downing, Theresa Y MacDonald, Mirna Jarosz, Doron Lipson, Scott T Tagawa, David M Nanus,[...]. Eur Urol 2013
276
15

Chromothripsis and focal copy number alterations determine poor outcome in malignant melanoma.
Daniela Hirsch, Ralf Kemmerling, Sean Davis, Jordi Camps, Paul S Meltzer, Thomas Ried, Timo Gaiser. Cancer Res 2013
61
15

Pan-cancer patterns of somatic copy number alteration.
Travis I Zack, Stephen E Schumacher, Scott L Carter, Andre D Cherniack, Gordon Saksena, Barbara Tabak, Michael S Lawrence, Cheng-Zhong Zhsng, Jeremiah Wala, Craig H Mermel,[...]. Nat Genet 2013
15

Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms.
Ankit Malhotra, Michael Lindberg, Gregory G Faust, Mitchell L Leibowitz, Royden A Clark, Ryan M Layer, Aaron R Quinlan, Ira M Hall. Genome Res 2013
122
15

Constitutional chromothripsis rearrangements involve clustered double-stranded DNA breaks and nonhomologous repair mechanisms.
Wigard P Kloosterman, Masoumeh Tavakoli-Yaraki, Markus J van Roosmalen, Ellen van Binsbergen, Ivo Renkens, Karen Duran, Lucia Ballarati, Sarah Vergult, Daniela Giardino, Kerstin Hansson,[...]. Cell Rep 2012
151
12

Cancer: When catastrophe strikes a cell.
Jose M C Tubio, Xavier Estivill. Nature 2011
50
12

Mechanistic rationale for inhibition of poly(ADP-ribose) polymerase in ETS gene fusion-positive prostate cancer.
J Chad Brenner, Bushra Ateeq, Yong Li, Anastasia K Yocum, Qi Cao, Irfan A Asangani, Sonam Patel, Xiaoju Wang, Hallie Liang, Jindan Yu,[...]. Cancer Cell 2011
308
12

Increased survival with enzalutamide in prostate cancer after chemotherapy.
Howard I Scher, Karim Fizazi, Fred Saad, Mary-Ellen Taplin, Cora N Sternberg, Kurt Miller, Ronald de Wit, Peter Mulders, Kim N Chi, Neal D Shore,[...]. N Engl J Med 2012
12


Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements.
Michael C Haffner, Martin J Aryee, Antoun Toubaji, David M Esopi, Roula Albadine, Bora Gurel, William B Isaacs, G Steven Bova, Wennuan Liu, Jianfeng Xu,[...]. Nat Genet 2010
396
12


DNA-Repair Defects and Olaparib in Metastatic Prostate Cancer.
Joaquin Mateo, Suzanne Carreira, Shahneen Sandhu, Susana Miranda, Helen Mossop, Raquel Perez-Lopez, Daniel Nava Rodrigues, Dan Robinson, Aurelius Omlin, Nina Tunariu,[...]. N Engl J Med 2015
12

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.
Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G F Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk,[...]. PLoS Comput Biol 2011
355
10

Molecular characterization of neuroendocrine prostate cancer and identification of new drug targets.
Himisha Beltran, David S Rickman, Kyung Park, Sung Suk Chae, Andrea Sboner, Theresa Y MacDonald, Yuwei Wang, Karen L Sheikh, Stéphane Terry, Scott T Tagawa,[...]. Cancer Discov 2011
498
10

Induced chromosomal proximity and gene fusions in prostate cancer.
Ram-Shankar Mani, Scott A Tomlins, Kaitlin Callahan, Aparna Ghosh, Mukesh K Nyati, Sooryanarayana Varambally, Nallasivam Palanisamy, Arul M Chinnaiyan. Science 2009
283
10

Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers.
Akash Kumar, Thomas A White, Alexandra P MacKenzie, Nigel Clegg, Choli Lee, Ruth F Dumpit, Ilsa Coleman, Sarah B Ng, Stephen J Salipante, Mark J Rieder,[...]. Proc Natl Acad Sci U S A 2011
179
10

Genomic profiling reveals alternative genetic pathways of prostate tumorigenesis.
Jacques Lapointe, Chunde Li, Craig P Giacomini, Keyan Salari, Stephanie Huang, Pei Wang, Michelle Ferrari, Tina Hernandez-Boussard, James D Brooks, Jonathan R Pollack. Cancer Res 2007
193
10

The TMPRSS2:ERG rearrangement, ERG expression, and prostate cancer outcomes: a cohort study and meta-analysis.
Andreas Pettersson, Rebecca E Graff, Scott R Bauer, Michael J Pitt, Rosina T Lis, Edward C Stack, Neil E Martin, Lauren Kunz, Kathryn L Penney, Azra H Ligon,[...]. Cancer Epidemiol Biomarkers Prev 2012
209
10

CHD1 is a 5q21 tumor suppressor required for ERG rearrangement in prostate cancer.
Lia Burkhardt, Sarah Fuchs, Antje Krohn, Sawinee Masser, Malte Mader, Martina Kluth, Frederik Bachmann, Hartwig Huland, Thomas Steuber, Markus Graefen,[...]. Cancer Res 2013
161
10

Sporadic and reversible chromothripsis in chronic lymphocytic leukemia revealed by longitudinal genomic analysis.
L Bassaganyas, S Beà, G Escaramís, C Tornador, I Salaverria, L Zapata, O Drechsel, P G Ferreira, B Rodriguez-Santiago, J M C Tubio,[...]. Leukemia 2013
24
16

Mutational processes molding the genomes of 21 breast cancers.
Serena Nik-Zainal, Ludmil B Alexandrov, David C Wedge, Peter Van Loo, Christopher D Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A Stebbings,[...]. Cell 2012
10

Chromothripsis: breakage-fusion-bridge over and over again.
Carlos Oscar Sánchez Sorzano, Alberto Pascual-Montano, Ainhoa Sánchez de Diego, Carlos Martínez-A, Karel H M van Wely. Cell Cycle 2013
29
13

A hormone-DNA repair circuit governs the response to genotoxic insult.
Jonathan F Goodwin, Matthew J Schiewer, Jeffry L Dean, Randy S Schrecengost, Renée de Leeuw, Sumin Han, Teng Ma, Robert B Den, Adam P Dicker, Felix Y Feng,[...]. Cancer Discov 2013
204
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.