A citation-based method for searching scientific literature

Nobuya Koike, Seung-Hee Yoo, Hung-Chung Huang, Vivek Kumar, Choogon Lee, Tae-Kyung Kim, Joseph S Takahashi. Science 2012
Times Cited: 847







List of co-cited articles
1124 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
34

Molecular architecture of the mammalian circadian clock.
Carrie L Partch, Carla B Green, Joseph S Takahashi. Trends Cell Biol 2014
720
22

Diurnal transcriptome atlas of a primate across major neural and peripheral tissues.
Ludovic S Mure, Hiep D Le, Giorgia Benegiamo, Max W Chang, Luis Rios, Ngalla Jillani, Maina Ngotho, Thomas Kariuki, Ouria Dkhissi-Benyahya, Howard M Cooper,[...]. Science 2018
288
20

The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control.
Yasukazu Nakahata, Milota Kaluzova, Benedetto Grimaldi, Saurabh Sahar, Jun Hirayama, Danica Chen, Leonard P Guarente, Paolo Sassone-Corsi. Cell 2008
941
19

Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver.
Guillaume Rey, François Cesbron, Jacques Rougemont, Hans Reinke, Michael Brunner, Felix Naef. PLoS Biol 2011
324
19

SIRT1 regulates circadian clock gene expression through PER2 deacetylation.
Gad Asher, David Gatfield, Markus Stratmann, Hans Reinke, Charna Dibner, Florian Kreppel, Raul Mostoslavsky, Frederick W Alt, Ueli Schibler. Cell 2008
907
18

Coordination of circadian timing in mammals.
Steven M Reppert, David R Weaver. Nature 2002
17

Coordinated transcription of key pathways in the mouse by the circadian clock.
Satchidananda Panda, Marina P Antoch, Brooke H Miller, Andrew I Su, Andrew B Schook, Marty Straume, Peter G Schultz, Steve A Kay, Joseph S Takahashi, John B Hogenesch. Cell 2002
17

Early aging and age-related pathologies in mice deficient in BMAL1, the core componentof the circadian clock.
Roman V Kondratov, Anna A Kondratova, Victoria Y Gorbacheva, Olena V Vykhovanets, Marina P Antoch. Genes Dev 2006
709
16

Circadian time signatures of fitness and disease.
Joseph Bass, Mitchell A Lazar. Science 2016
277
15


PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues.
Seung-Hee Yoo, Shin Yamazaki, Phillip L Lowrey, Kazuhiro Shimomura, Caroline H Ko, Ethan D Buhr, Sandra M Siepka, Hee-Kyung Hong, Won Jun Oh, Ook Joon Yoo,[...]. Proc Natl Acad Sci U S A 2004
15

Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β.
Han Cho, Xuan Zhao, Megumi Hatori, Ruth T Yu, Grant D Barish, Michael T Lam, Ling-Wa Chong, Luciano DiTacchio, Annette R Atkins, Christopher K Glass,[...]. Nature 2012
640
13

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation.
Jerome S Menet, Joseph Rodriguez, Katharine C Abruzzi, Michael Rosbash. Elife 2012
221
13

A circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism.
Dan Feng, Tao Liu, Zheng Sun, Anne Bugge, Shannon E Mullican, Theresa Alenghat, X Shirley Liu, Mitchell A Lazar. Science 2011
470
13

Defining the Independence of the Liver Circadian Clock.
Kevin B Koronowski, Kenichiro Kinouchi, Patrick-Simon Welz, Jacob G Smith, Valentina M Zinna, Jiejun Shi, Muntaha Samad, Siwei Chen, Christophe N Magnan, Jason M Kinchen,[...]. Cell 2019
111
13

Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet.
Megumi Hatori, Christopher Vollmers, Amir Zarrinpar, Luciano DiTacchio, Eric A Bushong, Shubhroz Gill, Mathias Leblanc, Amandine Chaix, Matthew Joens, James A J Fitzpatrick,[...]. Cell Metab 2012
984
13

Reprogramming of the circadian clock by nutritional challenge.
Kristin L Eckel-Mahan, Vishal R Patel, Sara de Mateo, Ricardo Orozco-Solis, Nicholas J Ceglia, Saurabh Sahar, Sherry A Dilag-Penilla, Kenneth A Dyar, Pierre Baldi, Paolo Sassone-Corsi. Cell 2013
379
13

Macromolecular Assemblies of the Mammalian Circadian Clock.
Rajindra P Aryal, Pieter Bas Kwak, Alfred G Tamayo, Michael Gebert, Po-Lin Chiu, Thomas Walz, Charles J Weitz. Mol Cell 2017
116
13

Circadian physiology of metabolism.
Satchidananda Panda. Science 2016
392
12

Cryptochromes mediate rhythmic repression of the glucocorticoid receptor.
Katja A Lamia, Stephanie J Papp, Ruth T Yu, Grant D Barish, N Henriette Uhlenhaut, Johan W Jonker, Michael Downes, Ronald M Evans. Nature 2011
352
12

Circadian enhancers coordinate multiple phases of rhythmic gene transcription in vivo.
Bin Fang, Logan J Everett, Jennifer Jager, Erika Briggs, Sean M Armour, Dan Feng, Ankur Roy, Zachary Gerhart-Hines, Zheng Sun, Mitchell A Lazar. Cell 2014
144
12

Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis.
Kathryn Moynihan Ramsey, Jun Yoshino, Cynthia S Brace, Dana Abrassart, Yumiko Kobayashi, Biliana Marcheva, Hee-Kyung Hong, Jason L Chong, Ethan D Buhr, Choogon Lee,[...]. Science 2009
744
12

Posttranslational mechanisms regulate the mammalian circadian clock.
C Lee, J P Etchegaray, F R Cagampang, A S Loudon, S M Reppert. Cell 2001
832
12

Extensive and divergent circadian gene expression in liver and heart.
Kai-Florian Storch, Ovidiu Lipan, Igor Leykin, N Viswanathan, Fred C Davis, Wing H Wong, Charles J Weitz. Nature 2002
12

AMPK regulates the circadian clock by cryptochrome phosphorylation and degradation.
Katja A Lamia, Uma M Sachdeva, Luciano DiTacchio, Elliot C Williams, Jacqueline G Alvarez, Daniel F Egan, Debbie S Vasquez, Henry Juguilon, Satchidananda Panda, Reuben J Shaw,[...]. Science 2009
574
12


Circadian integration of metabolism and energetics.
Joseph Bass, Joseph S Takahashi. Science 2010
12

Temperature as a universal resetting cue for mammalian circadian oscillators.
Ethan D Buhr, Seung-Hee Yoo, Joseph S Takahashi. Science 2010
524
11

Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1.
Yasukazu Nakahata, Saurabh Sahar, Giuseppe Astarita, Milota Kaluzova, Paolo Sassone-Corsi. Science 2009
795
11

The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator.
Nicolas Preitner, Francesca Damiola, Luis Lopez-Molina, Joszef Zakany, Denis Duboule, Urs Albrecht, Ueli Schibler. Cell 2002
11

Resetting of circadian time in peripheral tissues by glucocorticoid signaling.
A Balsalobre, S A Brown, L Marcacci, F Tronche, C Kellendonk, H M Reichardt, G Schütz, U Schibler. Science 2000
11

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
11

Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes.
Biliana Marcheva, Kathryn Moynihan Ramsey, Ethan D Buhr, Yumiko Kobayashi, Hong Su, Caroline H Ko, Ganka Ivanova, Chiaki Omura, Shelley Mo, Martha H Vitaterna,[...]. Nature 2010
928
11

Circadian regulator CLOCK is a histone acetyltransferase.
Masao Doi, Jun Hirayama, Paolo Sassone-Corsi. Cell 2006
581
10

CLOCK:BMAL1 is a pioneer-like transcription factor.
Jerome S Menet, Stefan Pescatore, Michael Rosbash. Genes Dev 2014
129
10

GENE REGULATION. Discrete functions of nuclear receptor Rev-erbα couple metabolism to the clock.
Yuxiang Zhang, Bin Fang, Matthew J Emmett, Manashree Damle, Zheng Sun, Dan Feng, Sean M Armour, Jarrett R Remsberg, Jennifer Jager, Raymond E Soccio,[...]. Science 2015
184
10

Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome.
Christopher Vollmers, Robert J Schmitz, Jason Nathanson, Gene Yeo, Joseph R Ecker, Satchidananda Panda. Cell Metab 2012
170
10

Obesity and metabolic syndrome in circadian Clock mutant mice.
Fred W Turek, Corinne Joshu, Akira Kohsaka, Emily Lin, Ganka Ivanova, Erin McDearmon, Aaron Laposky, Sue Losee-Olson, Amy Easton, Dalan R Jensen,[...]. Science 2005
10

mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop.
K Kume, M J Zylka, S Sriram, L P Shearman, D R Weaver, X Jin, E S Maywood, M H Hastings, S M Reppert. Cell 1999
10

Role of the CLOCK protein in the mammalian circadian mechanism.
N Gekakis, D Staknis, H B Nguyen, F C Davis, L D Wilsbacher, D P King, J S Takahashi, C J Weitz. Science 1998
10


Physiological significance of a peripheral tissue circadian clock.
Katja A Lamia, Kai-Florian Storch, Charles J Weitz. Proc Natl Acad Sci U S A 2008
700
10

Rev-erbα dynamically modulates chromatin looping to control circadian gene transcription.
Yong Hoon Kim, Sajid A Marhon, Yuxiang Zhang, David J Steger, Kyoung-Jae Won, Mitchell A Lazar. Science 2018
100
10

Identification of small molecule activators of cryptochrome.
Tsuyoshi Hirota, Jae Wook Lee, Peter C St John, Mariko Sawa, Keiko Iwaisako, Takako Noguchi, Pagkapol Y Pongsawakul, Tim Sonntag, David K Welsh, David A Brenner,[...]. Science 2012
282
9

Rhythmic Oxygen Levels Reset Circadian Clocks through HIF1α.
Yaarit Adamovich, Benjamin Ladeuix, Marina Golik, Maarten P Koeners, Gad Asher. Cell Metab 2017
140
9

A functional genomics strategy reveals Rora as a component of the mammalian circadian clock.
Trey K Sato, Satchidananda Panda, Loren J Miraglia, Teresa M Reyes, Radu D Rudic, Peter McNamara, Kinnery A Naik, Garret A FitzGerald, Steve A Kay, John B Hogenesch. Neuron 2004
705
9

Circadian rhythms in the absence of the clock gene Bmal1.
Sandipan Ray, Utham K Valekunja, Alessandra Stangherlin, Steven A Howell, Ambrosius P Snijders, Gopinath Damodaran, Akhilesh B Reddy. Science 2020
64
14

Circadian clocks in human red blood cells.
John S O'Neill, Akhilesh B Reddy. Nature 2011
512
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.