A citation-based method for searching scientific literature

Matthias Meyer, Martin Kircher, Marie-Theres Gansauge, Heng Li, Fernando Racimo, Swapan Mallick, Joshua G Schraiber, Flora Jay, Kay Prüfer, Cesare de Filippo, Peter H Sudmant, Can Alkan, Qiaomei Fu, Ron Do, Nadin Rohland, Arti Tandon, Michael Siebauer, Richard E Green, Katarzyna Bryc, Adrian W Briggs, Udo Stenzel, Jesse Dabney, Jay Shendure, Jacob Kitzman, Michael F Hammer, Michael V Shunkov, Anatoli P Derevianko, Nick Patterson, Aida M Andrés, Evan E Eichler, Montgomery Slatkin, David Reich, Janet Kelso, Svante Pääbo. Science 2012
Times Cited: 874







List of co-cited articles
853 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The complete genome sequence of a Neanderthal from the Altai Mountains.
Kay Prüfer, Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer, Anja Heinze, Gabriel Renaud, Peter H Sudmant, Cesare de Filippo,[...]. Nature 2014
904
60

A high-coverage Neandertal genome from Vindija Cave in Croatia.
Kay Prüfer, Cesare de Filippo, Steffi Grote, Fabrizio Mafessoni, Petra Korlević, Mateja Hajdinjak, Benjamin Vernot, Laurits Skov, Pinghsun Hsieh, Stéphane Peyrégne,[...]. Science 2017
206
40

A draft sequence of the Neandertal genome.
Richard E Green, Johannes Krause, Adrian W Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher, Nick Patterson, Heng Li, Weiwei Zhai, Markus Hsi-Yang Fritz,[...]. Science 2010
36

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
555
35

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
27

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
26


An early modern human from Romania with a recent Neanderthal ancestor.
Qiaomei Fu, Mateja Hajdinjak, Oana Teodora Moldovan, Silviu Constantin, Swapan Mallick, Pontus Skoglund, Nick Patterson, Nadin Rohland, Iosif Lazaridis, Birgit Nickel,[...]. Nature 2015
259
23

Ancient admixture in human history.
Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
980
22

Ancient human genomes suggest three ancestral populations for present-day Europeans.
Iosif Lazaridis, Nick Patterson, Alissa Mittnik, Gabriel Renaud, Swapan Mallick, Karola Kirsanow, Peter H Sudmant, Joshua G Schraiber, Sergi Castellano, Mark Lipson,[...]. Nature 2014
577
21

A high-coverage Neandertal genome from Chagyrskaya Cave.
Fabrizio Mafessoni, Steffi Grote, Cesare de Filippo, Viviane Slon, Kseniya A Kolobova, Bence Viola, Sergey V Markin, Manjusha Chintalapati, Stephane Peyrégne, Laurits Skov,[...]. Proc Natl Acad Sci U S A 2020
46
45

ANGSD: Analysis of Next Generation Sequencing Data.
Thorfinn Sand Korneliussen, Anders Albrechtsen, Rasmus Nielsen. BMC Bioinformatics 2014
875
20

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.
Jesse Dabney, Michael Knapp, Isabelle Glocke, Marie-Theres Gansauge, Antje Weihmann, Birgit Nickel, Cristina Valdiosera, Nuria García, Svante Pääbo, Juan-Luis Arsuaga,[...]. Proc Natl Acad Sci U S A 2013
519
20

Genome sequence of a 45,000-year-old modern human from western Siberia.
Qiaomei Fu, Heng Li, Priya Moorjani, Flora Jay, Sergey M Slepchenko, Aleksei A Bondarev, Philip L F Johnson, Ayinuer Aximu-Petri, Kay Prüfer, Cesare de Filippo,[...]. Nature 2014
396
19

Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals.
Benjamin Vernot, Serena Tucci, Janet Kelso, Joshua G Schraiber, Aaron B Wolf, Rachel M Gittelman, Michael Dannemann, Steffi Grote, Rajiv C McCoy, Heather Norton,[...]. Science 2016
175
19

Massive migration from the steppe was a source for Indo-European languages in Europe.
Wolfgang Haak, Iosif Lazaridis, Nick Patterson, Nadin Rohland, Swapan Mallick, Bastien Llamas, Guido Brandt, Susanne Nordenfelt, Eadaoin Harney, Kristin Stewardson,[...]. Nature 2015
570
18

DNA analysis of an early modern human from Tianyuan Cave, China.
Qiaomei Fu, Matthias Meyer, Xing Gao, Udo Stenzel, Hernán A Burbano, Janet Kelso, Svante Pääbo. Proc Natl Acad Sci U S A 2013
242
18

Population structure and eigenanalysis.
Nick Patterson, Alkes L Price, David Reich. PLoS Genet 2006
17

Genetic history of an archaic hominin group from Denisova Cave in Siberia.
David Reich, Richard E Green, Martin Kircher, Johannes Krause, Nick Patterson, Eric Y Durand, Bence Viola, Adrian W Briggs, Udo Stenzel, Philip L F Johnson,[...]. Nature 2010
700
17

Reconstructing the genetic history of late Neanderthals.
Mateja Hajdinjak, Qiaomei Fu, Alexander Hübner, Martin Petr, Fabrizio Mafessoni, Steffi Grote, Pontus Skoglund, Vagheesh Narasimham, Hélène Rougier, Isabelle Crevecoeur,[...]. Nature 2018
81
20

Patterns of damage in genomic DNA sequences from a Neandertal.
Adrian W Briggs, Udo Stenzel, Philip L F Johnson, Richard E Green, Janet Kelso, Kay Prüfer, Matthias Meyer, Johannes Krause, Michael T Ronan, Michael Lachmann,[...]. Proc Natl Acad Sci U S A 2007
452
17

Insights into human genetic variation and population history from 929 diverse genomes.
Anders Bergström, Shane A McCarthy, Ruoyun Hui, Mohamed A Almarri, Qasim Ayub, Petr Danecek, Yuan Chen, Sabine Felkel, Pille Hallast, Jack Kamm,[...]. Science 2020
135
16

The genetic history of Ice Age Europe.
Qiaomei Fu, Cosimo Posth, Mateja Hajdinjak, Martin Petr, Swapan Mallick, Daniel Fernandes, Anja Furtwängler, Wolfgang Haak, Matthias Meyer, Alissa Mittnik,[...]. Nature 2016
307
16

Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins.
Matthias Meyer, Juan-Luis Arsuaga, Cesare de Filippo, Sarah Nagel, Ayinuer Aximu-Petri, Birgit Nickel, Ignacio Martínez, Ana Gracia, José María Bermúdez de Castro, Eudald Carbonell,[...]. Nature 2016
200
16

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA.
Emilia Huerta-Sánchez, Xin Jin, Asan, Zhuoma Bianba, Benjamin M Peter, Nicolas Vinckenbosch, Yu Liang, Xin Yi, Mingze He, Mehmet Somel,[...]. Nature 2014
448
16

The genomic landscape of Neanderthal ancestry in present-day humans.
Sriram Sankararaman, Swapan Mallick, Michael Dannemann, Kay Prüfer, Janet Kelso, Svante Pääbo, Nick Patterson, David Reich. Nature 2014
431
16

Genomic insights into the origin of farming in the ancient Near East.
Iosif Lazaridis, Dani Nadel, Gary Rollefson, Deborah C Merrett, Nadin Rohland, Swapan Mallick, Daniel Fernandes, Mario Novak, Beatriz Gamarra, Kendra Sirak,[...]. Nature 2016
327
16

Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture.
Sharon R Browning, Brian L Browning, Ying Zhou, Serena Tucci, Joshua M Akey. Cell 2018
111
15

The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans.
Sriram Sankararaman, Swapan Mallick, Nick Patterson, David Reich. Curr Biol 2016
181
15

Population genomics of Bronze Age Eurasia.
Morten E Allentoft, Martin Sikora, Karl-Göran Sjögren, Simon Rasmussen, Morten Rasmussen, Jesper Stenderup, Peter B Damgaard, Hannes Schroeder, Torbjörn Ahlström, Lasse Vinner,[...]. Nature 2015
481
15

The genome of the offspring of a Neanderthal mother and a Denisovan father.
Viviane Slon, Fabrizio Mafessoni, Benjamin Vernot, Cesare de Filippo, Steffi Grote, Bence Viola, Mateja Hajdinjak, Stéphane Peyrégne, Sarah Nagel, Samantha Brown,[...]. Nature 2018
97
14

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.
Maanasa Raghavan, Pontus Skoglund, Kelly E Graf, Mait Metspalu, Anders Albrechtsen, Ida Moltke, Simon Rasmussen, Thomas W Stafford, Ludovic Orlando, Ene Metspalu,[...]. Nature 2014
351
14

Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
13

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
Hákon Jónsson, Aurélien Ginolhac, Mikkel Schubert, Philip L F Johnson, Ludovic Orlando. Bioinformatics 2013
530
13

The formation of human populations in South and Central Asia.
Vagheesh M Narasimhan, Nick Patterson, Priya Moorjani, Nadin Rohland, Rebecca Bernardos, Swapan Mallick, Iosif Lazaridis, Nathan Nakatsuka, Iñigo Olalde, Mark Lipson,[...]. Science 2019
124
13

leeHom: adaptor trimming and merging for Illumina sequencing reads.
Gabriel Renaud, Udo Stenzel, Janet Kelso. Nucleic Acids Res 2014
117
13

Multiple Deeply Divergent Denisovan Ancestries in Papuans.
Guy S Jacobs, Georgi Hudjashov, Lauri Saag, Pradiptajati Kusuma, Chelzie C Darusallam, Daniel J Lawson, Mayukh Mondal, Luca Pagani, François-Xavier Ricaut, Mark Stoneking,[...]. Cell 2019
68
19


The genomic history of southeastern Europe.
Iain Mathieson, Songül Alpaslan-Roodenberg, Cosimo Posth, Anna Szécsényi-Nagy, Nadin Rohland, Swapan Mallick, Iñigo Olalde, Nasreen Broomandkhoshbacht, Francesca Candilio, Olivia Cheronet,[...]. Nature 2018
170
12

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
12


Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing.
Nadin Rohland, Isabelle Glocke, Ayinuer Aximu-Petri, Matthias Meyer. Nat Protoc 2018
63
19

Genome-wide patterns of selection in 230 ancient Eurasians.
Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songül Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak,[...]. Nature 2015
512
12


Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers.
Martin Sikora, Andaine Seguin-Orlando, Vitor C Sousa, Anders Albrechtsen, Thorfinn Korneliussen, Amy Ko, Simon Rasmussen, Isabelle Dupanloup, Philip R Nigst, Marjolein D Bosch,[...]. Science 2017
97
11

40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia.
Melinda A Yang, Xing Gao, Christoph Theunert, Haowen Tong, Ayinuer Aximu-Petri, Birgit Nickel, Montgomery Slatkin, Matthias Meyer, Svante Pääbo, Janet Kelso,[...]. Curr Biol 2017
71
15

Paleogenomics. Genomic structure in Europeans dating back at least 36,200 years.
Andaine Seguin-Orlando, Thorfinn S Korneliussen, Martin Sikora, Anna-Sapfo Malaspinas, Andrea Manica, Ida Moltke, Anders Albrechtsen, Amy Ko, Ashot Margaryan, Vyacheslav Moiseyev,[...]. Science 2014
148
11

The population history of northeastern Siberia since the Pleistocene.
Martin Sikora, Vladimir V Pitulko, Vitor C Sousa, Morten E Allentoft, Lasse Vinner, Simon Rasmussen, Ashot Margaryan, Peter de Barros Damgaard, Constanza de la Fuente, Gabriel Renaud,[...]. Nature 2019
76
14

Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania.
David Reich, Nick Patterson, Martin Kircher, Frederick Delfin, Madhusudan R Nandineni, Irina Pugach, Albert Min-Shan Ko, Ying-Chin Ko, Timothy A Jinam, Maude E Phipps,[...]. Am J Hum Genet 2011
233
11

Multiple episodes of interbreeding between Neanderthal and modern humans.
Fernando A Villanea, Joshua G Schraiber. Nat Ecol Evol 2019
47
23


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.