A citation-based method for searching scientific literature

Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
Times Cited: 848







List of co-cited articles
756 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
49

Population structure and eigenanalysis.
Nick Patterson, Alkes L Price, David Reich. PLoS Genet 2006
40


Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
28


PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
26

ANGSD: Analysis of Next Generation Sequencing Data.
Thorfinn Sand Korneliussen, Anders Albrechtsen, Rasmus Nielsen. BMC Bioinformatics 2014
729
24

The variant call format and VCFtools.
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A Albers, Eric Banks, Mark A DePristo, Robert E Handsaker, Gerton Lunter, Gabor T Marth, Stephen T Sherry,[...]. Bioinformatics 2011
23

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
23

Massive migration from the steppe was a source for Indo-European languages in Europe.
Wolfgang Haak, Iosif Lazaridis, Nick Patterson, Nadin Rohland, Swapan Mallick, Bastien Llamas, Guido Brandt, Susanne Nordenfelt, Eadaoin Harney, Kristin Stewardson,[...]. Nature 2015
520
22

Genomic insights into the origin of farming in the ancient Near East.
Iosif Lazaridis, Dani Nadel, Gary Rollefson, Deborah C Merrett, Nadin Rohland, Swapan Mallick, Daniel Fernandes, Mario Novak, Beatriz Gamarra, Kendra Sirak,[...]. Nature 2016
295
21

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
20

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
19

Ancient human genomes suggest three ancestral populations for present-day Europeans.
Iosif Lazaridis, Nick Patterson, Alissa Mittnik, Gabriel Renaud, Swapan Mallick, Karola Kirsanow, Peter H Sudmant, Joshua G Schraiber, Sergi Castellano, Mark Lipson,[...]. Nature 2014
536
18

Genome-wide patterns of selection in 230 ancient Eurasians.
Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songül Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak,[...]. Nature 2015
466
18

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
481
16

The formation of human populations in South and Central Asia.
Vagheesh M Narasimhan, Nick Patterson, Priya Moorjani, Nadin Rohland, Rebecca Bernardos, Swapan Mallick, Iosif Lazaridis, Nathan Nakatsuka, Iñigo Olalde, Mark Lipson,[...]. Science 2019
80
20

Reconstructing Indian population history.
David Reich, Kumarasamy Thangaraj, Nick Patterson, Alkes L Price, Lalji Singh. Nature 2009
846
15

Inference of population structure using dense haplotype data.
Daniel John Lawson, Garrett Hellenthal, Simon Myers, Daniel Falush. PLoS Genet 2012
480
15

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
15

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.
Maanasa Raghavan, Pontus Skoglund, Kelly E Graf, Mait Metspalu, Anders Albrechtsen, Ida Moltke, Simon Rasmussen, Thomas W Stafford, Ludovic Orlando, Ene Metspalu,[...]. Nature 2014
335
14

The genetic history of Ice Age Europe.
Qiaomei Fu, Cosimo Posth, Mateja Hajdinjak, Martin Petr, Swapan Mallick, Daniel Fernandes, Anja Furtwängler, Wolfgang Haak, Matthias Meyer, Alissa Mittnik,[...]. Nature 2016
274
14

Evaluating the use of ABBA-BABA statistics to locate introgressed loci.
Simon H Martin, John W Davey, Chris D Jiggins. Mol Biol Evol 2015
223
13

Robust demographic inference from genomic and SNP data.
Laurent Excoffier, Isabelle Dupanloup, Emilia Huerta-Sánchez, Vitor C Sousa, Matthieu Foll. PLoS Genet 2013
545
13

Testing for ancient admixture between closely related populations.
Eric Y Durand, Nick Patterson, David Reich, Montgomery Slatkin. Mol Biol Evol 2011
499
13

A draft sequence of the Neandertal genome.
Richard E Green, Johannes Krause, Adrian W Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher, Nick Patterson, Heng Li, Weiwei Zhai, Markus Hsi-Yang Fritz,[...]. Science 2010
13

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
Hákon Jónsson, Aurélien Ginolhac, Mikkel Schubert, Philip L F Johnson, Ludovic Orlando. Bioinformatics 2013
468
13

The first horse herders and the impact of early Bronze Age steppe expansions into Asia.
Peter de Barros Damgaard, Rui Martiniano, Jack Kamm, J Víctor Moreno-Mayar, Guus Kroonen, Michaël Peyrot, Gojko Barjamovic, Simon Rasmussen, Claus Zacho, Nurbol Baimukhanov,[...]. Science 2018
92
14




Principal components analysis corrects for stratification in genome-wide association studies.
Alkes L Price, Nick J Patterson, Robert M Plenge, Michael E Weinblatt, Nancy A Shadick, David Reich. Nat Genet 2006
12

Estimating genetic kin relationships in prehistoric populations.
Jose Manuel Monroy Kuhn, Mattias Jakobsson, Torsten Günther. PLoS One 2018
54
22

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing.
Hansi Weissensteiner, Dominic Pacher, Anita Kloss-Brandstätter, Lukas Forer, Günther Specht, Hans-Jürgen Bandelt, Florian Kronenberg, Antonio Salas, Sebastian Schönherr. Nucleic Acids Res 2016
288
12

40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia.
Melinda A Yang, Xing Gao, Christoph Theunert, Haowen Tong, Ayinuer Aximu-Petri, Birgit Nickel, Montgomery Slatkin, Matthias Meyer, Svante Pääbo, Janet Kelso,[...]. Curr Biol 2017
62
19

The prehistoric peopling of Southeast Asia.
Hugh McColl, Fernando Racimo, Lasse Vinner, Fabrice Demeter, Takashi Gakuhari, J Víctor Moreno-Mayar, George van Driem, Uffe Gram Wilken, Andaine Seguin-Orlando, Constanza de la Fuente Castro,[...]. Science 2018
75
14

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
11

The genomic history of southeastern Europe.
Iain Mathieson, Songül Alpaslan-Roodenberg, Cosimo Posth, Anna Szécsényi-Nagy, Nadin Rohland, Swapan Mallick, Iñigo Olalde, Nasreen Broomandkhoshbacht, Francesca Candilio, Olivia Cheronet,[...]. Nature 2018
148
11

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.
Jesse Dabney, Michael Knapp, Isabelle Glocke, Marie-Theres Gansauge, Antje Weihmann, Birgit Nickel, Cristina Valdiosera, Nuria García, Svante Pääbo, Juan-Luis Arsuaga,[...]. Proc Natl Acad Sci U S A 2013
465
11

An early modern human from Romania with a recent Neanderthal ancestor.
Qiaomei Fu, Mateja Hajdinjak, Oana Teodora Moldovan, Silviu Constantin, Swapan Mallick, Pontus Skoglund, Nick Patterson, Nadin Rohland, Iosif Lazaridis, Birgit Nickel,[...]. Nature 2015
235
11



A genetic atlas of human admixture history.
Garrett Hellenthal, George B J Busby, Gavin Band, James F Wilson, Cristian Capelli, Daniel Falush, Simon Myers. Science 2014
350
10

Population genomics of Bronze Age Eurasia.
Morten E Allentoft, Martin Sikora, Karl-Göran Sjögren, Simon Rasmussen, Morten Rasmussen, Jesper Stenderup, Peter B Damgaard, Hannes Schroeder, Torbjörn Ahlström, Lasse Vinner,[...]. Nature 2015
442
10

Upper Palaeolithic genomes reveal deep roots of modern Eurasians.
Eppie R Jones, Gloria Gonzalez-Fortes, Sarah Connell, Veronika Siska, Anders Eriksson, Rui Martiniano, Russell L McLaughlin, Marcos Gallego Llorente, Lara M Cassidy, Cristina Gamba,[...]. Nat Commun 2015
164
10

Ancient DNA indicates human population shifts and admixture in northern and southern China.
Melinda A Yang, Xuechun Fan, Bo Sun, Chungyu Chen, Jianfeng Lang, Ying-Chin Ko, Cheng-Hwa Tsang, Hunglin Chiu, Tianyi Wang, Qingchuan Bao,[...]. Science 2020
31
32


A framework for variation discovery and genotyping using next-generation DNA sequencing data.
Mark A DePristo, Eric Banks, Ryan Poplin, Kiran V Garimella, Jared R Maguire, Christopher Hartl, Anthony A Philippakis, Guillermo del Angel, Manuel A Rivas, Matt Hanna,[...]. Nat Genet 2011
9

The complete genome sequence of a Neanderthal from the Altai Mountains.
Kay Prüfer, Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer, Anja Heinze, Gabriel Renaud, Peter H Sudmant, Cesare de Filippo,[...]. Nature 2014
858
9

Dsuite - Fast D-statistics and related admixture evidence from VCF files.
Milan Malinsky, Michael Matschiner, Hannes Svardal. Mol Ecol Resour 2021
33
27


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.