A citation-based method for searching scientific literature

Amy J Lam, François St-Pierre, Yiyang Gong, Jesse D Marshall, Paula J Cranfill, Michelle A Baird, Michael R McKeown, Jörg Wiedenmann, Michael W Davidson, Mark J Schnitzer, Roger Y Tsien, Michael Z Lin. Nat Methods 2012
Times Cited: 471







List of co-cited articles
440 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
15

A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum.
Nathan C Shaner, Gerard G Lambert, Andrew Chammas, Yuhui Ni, Paula J Cranfill, Michelle A Baird, Brittney R Sell, John R Allen, Richard N Day, Maria Israelsson,[...]. Nat Methods 2013
570
14


Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein.
Nathan C Shaner, Robert E Campbell, Paul A Steinbach, Ben N G Giepmans, Amy E Palmer, Roger Y Tsien. Nat Biotechnol 2004
12

mScarlet: a bright monomeric red fluorescent protein for cellular imaging.
Daphne S Bindels, Lindsay Haarbosch, Laura van Weeren, Marten Postma, Katrin E Wiese, Marieke Mastop, Sylvain Aumonier, Guillaume Gotthard, Antoine Royant, Mark A Hink,[...]. Nat Methods 2017
367
12

Improving brightness and photostability of green and red fluorescent proteins for live cell imaging and FRET reporting.
Bryce T Bajar, Emily S Wang, Amy J Lam, Bongjae B Kim, Conor L Jacobs, Elizabeth S Howe, Michael W Davidson, Michael Z Lin, Jun Chu. Sci Rep 2016
182
12

Structure-guided evolution of cyan fluorescent proteins towards a quantum yield of 93%.
Joachim Goedhart, David von Stetten, Marjolaine Noirclerc-Savoye, Mickaël Lelimousin, Linda Joosen, Mark A Hink, Laura van Weeren, Theodorus W J Gadella, Antoine Royant. Nat Commun 2012
426
10

Development of an optimized backbone of FRET biosensors for kinases and GTPases.
Naoki Komatsu, Kazuhiro Aoki, Masashi Yamada, Hiroko Yukinaga, Yoshihisa Fujita, Yuji Kamioka, Michiyuki Matsuda. Mol Biol Cell 2011
358
9

Green fluorescent protein as a marker for gene expression.
M Chalfie, Y Tu, G Euskirchen, W W Ward, D C Prasher. Science 1994
8

Engineering and characterization of a superfolder green fluorescent protein.
Jean-Denis Pédelacq, Stéphanie Cabantous, Timothy Tran, Thomas C Terwilliger, Geoffrey S Waldo. Nat Biotechnol 2006
8

FRET imaging.
Elizabeth A Jares-Erijman, Thomas M Jovin. Nat Biotechnol 2003
7

Genetically encoded reporters of protein kinase A activity reveal impact of substrate tethering.
J Zhang, Y Ma, S S Taylor, R Y Tsien. Proc Natl Acad Sci U S A 2001
447
7

Visualization of PKA activity in plasma membrane microdomains.
Charlene Depry, Michael D Allen, Jin Zhang. Mol Biosyst 2011
132
7

Single-fluorophore biosensors for sensitive and multiplexed detection of signalling activities.
Sohum Mehta, Yong Zhang, Richard H Roth, Jin-Fan Zhang, Albert Mo, Brian Tenner, Richard L Huganir, Jin Zhang. Nat Cell Biol 2018
64
10

Imaging intracellular fluorescent proteins at nanometer resolution.
Eric Betzig, George H Patterson, Rachid Sougrat, O Wolf Lindwasser, Scott Olenych, Juan S Bonifacino, Michael W Davidson, Jennifer Lippincott-Schwartz, Harald F Hess. Science 2006
7

A Guide to Fluorescent Protein FRET Pairs.
Bryce T Bajar, Emily S Wang, Shu Zhang, Michael Z Lin, Jun Chu. Sensors (Basel) 2016
173
7

Improving the photostability of bright monomeric orange and red fluorescent proteins.
Nathan C Shaner, Michael Z Lin, Michael R McKeown, Paul A Steinbach, Kristin L Hazelwood, Michael W Davidson, Roger Y Tsien. Nat Methods 2008
643
7

High-sensitivity measurements of multiple kinase activities in live single cells.
Sergi Regot, Jacob J Hughey, Bryce T Bajar, Silvia Carrasco, Markus W Covert. Cell 2014
250
7

A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications.
Takeharu Nagai, Keiji Ibata, Eun Sun Park, Mie Kubota, Katsuhiko Mikoshiba, Atsushi Miyawaki. Nat Biotechnol 2002
7

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
7

Fluorescent protein FRET: the good, the bad and the ugly.
David W Piston, Gert-Jan Kremers. Trends Biochem Sci 2007
506
6

Genetically encoded biosensors for visualizing live-cell biochemical activity at super-resolution.
Gary C H Mo, Brian Ross, Fabian Hertel, Premashis Manna, Xinxing Yang, Eric Greenwald, Chris Booth, Ashlee M Plummer, Brian Tenner, Zan Chen,[...]. Nat Methods 2017
88
6

Bright monomeric red fluorescent protein with an extended fluorescence lifetime.
Ekaterina M Merzlyak, Joachim Goedhart, Dmitry Shcherbo, Mariya E Bulina, Aleksandr S Shcheglov, Arkady F Fradkov, Anna Gaintzeva, Konstantin A Lukyanov, Sergey Lukyanov, Theodorus W J Gadella,[...]. Nat Methods 2007
401
6

Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications.
O Griesbeck, G S Baird, R E Campbell, D A Zacharias, R Y Tsien. J Biol Chem 2001
765
6

The green fluorescent protein.
R Y Tsien. Annu Rev Biochem 1998
6

Near-infrared fluorescent proteins for multicolor in vivo imaging.
Daria M Shcherbakova, Vladislav V Verkhusha. Nat Methods 2013
326
6

An enhanced monomeric blue fluorescent protein with the high chemical stability of the chromophore.
Oksana M Subach, Paula J Cranfill, Michael W Davidson, Vladislav V Verkhusha. PLoS One 2011
154
6

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
6

Visualizing the mechanical activation of Src.
Yingxiao Wang, Elliot L Botvinick, Yihua Zhao, Michael W Berns, Shunichi Usami, Roger Y Tsien, Shu Chien. Nature 2005
474
5


Insulin disrupts beta-adrenergic signalling to protein kinase A in adipocytes.
Jin Zhang, Christopher J Hupfeld, Susan S Taylor, Jerrold M Olefsky, Roger Y Tsien. Nature 2005
235
5

Subcellular dynamics of protein kinase A activity visualized by FRET-based reporters.
Michael D Allen, Jin Zhang. Biochem Biophys Res Commun 2006
224
5

Dynamic Visualization of mTORC1 Activity in Living Cells.
Xin Zhou, Terri L Clister, Pamela R Lowry, Marcus M Seldin, G William Wong, Jin Zhang. Cell Rep 2015
70
7

Bright cyan fluorescent protein variants identified by fluorescence lifetime screening.
Joachim Goedhart, Laura van Weeren, Mark A Hink, Norbert O E Vischer, Kees Jalink, Theodorus W J Gadella. Nat Methods 2010
197
5


Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).
Michael J Rust, Mark Bates, Xiaowei Zhuang. Nat Methods 2006
5

Multiplex genome engineering using CRISPR/Cas systems.
Le Cong, F Ann Ran, David Cox, Shuailiang Lin, Robert Barretto, Naomi Habib, Patrick D Hsu, Xuebing Wu, Wenyan Jiang, Luciano A Marraffini,[...]. Science 2013
5



Direct multiplex imaging and optogenetics of Rho GTPases enabled by near-infrared FRET.
Daria M Shcherbakova, Natasha Cox Cammer, Tsipora M Huisman, Vladislav V Verkhusha, Louis Hodgson. Nat Chem Biol 2018
60
8

Cyan and yellow super fluorescent proteins with improved brightness, protein folding, and FRET Förster radius.
Gert-Jan Kremers, Joachim Goedhart, Erik B van Munster, Theodorus W J Gadella. Biochemistry 2006
290
5

Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells.
David A Zacharias, Jonathan D Violin, Alexandra C Newton, Roger Y Tsien. Science 2002
5


Bright monomeric near-infrared fluorescent proteins as tags and biosensors for multiscale imaging.
Daria M Shcherbakova, Mikhail Baloban, Alexander V Emelyanov, Michael Brenowitz, Peng Guo, Vladislav V Verkhusha. Nat Commun 2016
147
4

Visualizing Dynamics of Cell Signaling In Vivo with a Phase Separation-Based Kinase Reporter.
Qiang Zhang, Hai Huang, Luqing Zhang, Roland Wu, Chan-I Chung, Shao-Qing Zhang, Joaquim Torra, Antonino Schepis, Shaun R Coughlin, Thomas B Kornberg,[...]. Mol Cell 2018
32
12

A PKA activity sensor for quantitative analysis of endogenous GPCR signaling via 2-photon FRET-FLIM imaging.
Yao Chen, Jessica L Saulnier, Gary Yellen, Bernardo L Sabatini. Front Pharmacol 2014
56
7


HaloTag: a novel protein labeling technology for cell imaging and protein analysis.
Georgyi V Los, Lance P Encell, Mark G McDougall, Danette D Hartzell, Natasha Karassina, Chad Zimprich, Monika G Wood, Randy Learish, Rachel Friedman Ohana, Marjeta Urh,[...]. ACS Chem Biol 2008
4

Far-red fluorescent tags for protein imaging in living tissues.
Dmitry Shcherbo, Christopher S Murphy, Galina V Ermakova, Elena A Solovieva, Tatiana V Chepurnykh, Aleksandr S Shcheglov, Vladislav V Verkhusha, Vladimir Z Pletnev, Kristin L Hazelwood, Patrick M Roche,[...]. Biochem J 2009
346
4

A guide to choosing fluorescent proteins.
Nathan C Shaner, Paul A Steinbach, Roger Y Tsien. Nat Methods 2005
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.