A citation-based method for searching scientific literature

Junjie Qin, Yingrui Li, Zhiming Cai, Shenghui Li, Jianfeng Zhu, Fan Zhang, Suisha Liang, Wenwei Zhang, Yuanlin Guan, Dongqian Shen, Yangqing Peng, Dongya Zhang, Zhuye Jie, Wenxian Wu, Youwen Qin, Wenbin Xue, Junhua Li, Lingchuan Han, Donghui Lu, Peixian Wu, Yali Dai, Xiaojuan Sun, Zesong Li, Aifa Tang, Shilong Zhong, Xiaoping Li, Weineng Chen, Ran Xu, Mingbang Wang, Qiang Feng, Meihua Gong, Jing Yu, Yanyan Zhang, Ming Zhang, Torben Hansen, Gaston Sanchez, Jeroen Raes, Gwen Falony, Shujiro Okuda, Mathieu Almeida, Emmanuelle LeChatelier, Pierre Renault, Nicolas Pons, Jean-Michel Batto, Zhaoxi Zhang, Hua Chen, Ruifu Yang, Weimou Zheng, Songgang Li, Huanming Yang, Jian Wang, S Dusko Ehrlich, Rasmus Nielsen, Oluf Pedersen, Karsten Kristiansen, Jun Wang. Nature 2012
Times Cited: 2929







List of co-cited articles
796 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Gut metagenome in European women with normal, impaired and diabetic glucose control.
Fredrik H Karlsson, Valentina Tremaroli, Intawat Nookaew, Göran Bergström, Carl Johan Behre, Björn Fagerberg, Jens Nielsen, Fredrik Bäckhed. Nature 2013
26

Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults.
Nadja Larsen, Finn K Vogensen, Frans W J van den Berg, Dennis Sandris Nielsen, Anne Sofie Andreasen, Bente K Pedersen, Waleed Abu Al-Soud, Søren J Sørensen, Lars H Hansen, Mogens Jakobsen. PLoS One 2010
23

A human gut microbial gene catalogue established by metagenomic sequencing.
Junjie Qin, Ruiqiang Li, Jeroen Raes, Manimozhiyan Arumugam, Kristoffer Solvsten Burgdorf, Chaysavanh Manichanh, Trine Nielsen, Nicolas Pons, Florence Levenez, Takuji Yamada,[...]. Nature 2010
18

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.
Kristoffer Forslund, Falk Hildebrand, Trine Nielsen, Gwen Falony, Emmanuelle Le Chatelier, Shinichi Sunagawa, Edi Prifti, Sara Vieira-Silva, Valborg Gudmundsdottir, Helle K Pedersen,[...]. Nature 2015
876
17

Richness of human gut microbiome correlates with metabolic markers.
Emmanuelle Le Chatelier, Trine Nielsen, Junjie Qin, Edi Prifti, Falk Hildebrand, Gwen Falony, Mathieu Almeida, Manimozhiyan Arumugam, Jean-Michel Batto, Sean Kennedy,[...]. Nature 2013
14

Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach,[...]. Nature 2014
14

An obesity-associated gut microbiome with increased capacity for energy harvest.
Peter J Turnbaugh, Ruth E Ley, Michael A Mahowald, Vincent Magrini, Elaine R Mardis, Jeffrey I Gordon. Nature 2006
14

Human gut microbiota changes reveal the progression of glucose intolerance.
Xiuying Zhang, Dongqian Shen, Zhiwei Fang, Zhuye Jie, Xinmin Qiu, Chunfang Zhang, Yingli Chen, Linong Ji. PLoS One 2013
365
13

Microbial ecology: human gut microbes associated with obesity.
Ruth E Ley, Peter J Turnbaugh, Samuel Klein, Jeffrey I Gordon. Nature 2006
12

QIIME allows analysis of high-throughput community sequencing data.
J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña, Julia K Goodrich, Jeffrey I Gordon,[...]. Nat Methods 2010
11

The gut microbiome in atherosclerotic cardiovascular disease.
Zhuye Jie, Huihua Xia, Shi-Long Zhong, Qiang Feng, Shenghui Li, Suisha Liang, Huanzi Zhong, Zhipeng Liu, Yuan Gao, Hui Zhao,[...]. Nat Commun 2017
406
10

Metabolic endotoxemia initiates obesity and insulin resistance.
Patrice D Cani, Jacques Amar, Miguel Angel Iglesias, Marjorie Poggi, Claude Knauf, Delphine Bastelica, Audrey M Neyrinck, Francesca Fava, Kieran M Tuohy, Chantal Chabo,[...]. Diabetes 2007
10

Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice.
Patrice D Cani, Rodrigo Bibiloni, Claude Knauf, Aurélie Waget, Audrey M Neyrinck, Nathalie M Delzenne, Rémy Burcelin. Diabetes 2008
10

Human gut microbes impact host serum metabolome and insulin sensitivity.
Helle Krogh Pedersen, Valborg Gudmundsdottir, Henrik Bjørn Nielsen, Tuulia Hyotylainen, Trine Nielsen, Benjamin A H Jensen, Kristoffer Forslund, Falk Hildebrand, Edi Prifti, Gwen Falony,[...]. Nature 2016
745
10

DADA2: High-resolution sample inference from Illumina amplicon data.
Benjamin J Callahan, Paul J McMurdie, Michael J Rosen, Andrew W Han, Amy Jo A Johnson, Susan P Holmes. Nat Methods 2016
9


Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity.
Amandine Everard, Clara Belzer, Lucie Geurts, Janneke P Ouwerkerk, Céline Druart, Laure B Bindels, Yves Guiot, Muriel Derrien, Giulio G Muccioli, Nathalie M Delzenne,[...]. Proc Natl Acad Sci U S A 2013
9

Obesity alters gut microbial ecology.
Ruth E Ley, Fredrik Bäckhed, Peter Turnbaugh, Catherine A Lozupone, Robin D Knight, Jeffrey I Gordon. Proc Natl Acad Sci U S A 2005
9

Molecular characterisation of the faecal microbiota in patients with type II diabetes.
Xiaokang Wu, Chaofeng Ma, Lei Han, Muhammad Nawaz, Fei Gao, Xuyan Zhang, Pengbo Yu, Chang'an Zhao, Lianchuan Li, Aiping Zhou,[...]. Curr Microbiol 2010
259
9

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.
Yukihiro Furusawa, Yuuki Obata, Shinji Fukuda, Takaho A Endo, Gaku Nakato, Daisuke Takahashi, Yumiko Nakanishi, Chikako Uetake, Keiko Kato, Tamotsu Kato,[...]. Nature 2013
9

Butyrate improves insulin sensitivity and increases energy expenditure in mice.
Zhanguo Gao, Jun Yin, Jin Zhang, Robert E Ward, Roy J Martin, Michael Lefevre, William T Cefalu, Jianping Ye. Diabetes 2009
937
8

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease.
Zeneng Wang, Elizabeth Klipfell, Brian J Bennett, Robert Koeth, Bruce S Levison, Brandon Dugar, Ariel E Feldstein, Earl B Britt, Xiaoming Fu, Yoon-Mi Chung,[...]. Nature 2011
8

Microbiota-generated metabolites promote metabolic benefits via gut-brain neural circuits.
Filipe De Vadder, Petia Kovatcheva-Datchary, Daisy Goncalves, Jennifer Vinera, Carine Zitoun, Adeline Duchampt, Fredrik Bäckhed, Gilles Mithieux. Cell 2014
895
8

Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.
Anne Vrieze, Els Van Nood, Frits Holleman, Jarkko Salojärvi, Ruud S Kootte, Joep F W M Bartelsman, Geesje M Dallinga-Thie, Mariette T Ackermans, Mireille J Serlie, Raish Oozeer,[...]. Gastroenterology 2012
8

The gut microbiota as an environmental factor that regulates fat storage.
Fredrik Bäckhed, Hao Ding, Ting Wang, Lora V Hooper, Gou Young Koh, Andras Nagy, Clay F Semenkovich, Jeffrey I Gordon. Proc Natl Acad Sci U S A 2004
8

Alterations of the human gut microbiome in liver cirrhosis.
Nan Qin, Fengling Yang, Ang Li, Edi Prifti, Yanfei Chen, Li Shao, Jing Guo, Emmanuelle Le Chatelier, Jian Yao, Lingjiao Wu,[...]. Nature 2014
897
8

Metagenomic biomarker discovery and explanation.
Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S Garrett, Curtis Huttenhower. Genome Biol 2011
8

Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis.
Robert A Koeth, Zeneng Wang, Bruce S Levison, Jennifer A Buffa, Elin Org, Brendan T Sheehy, Earl B Britt, Xiaoming Fu, Yuping Wu, Lin Li,[...]. Nat Med 2013
7

The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment.
Xuan Zhang, Dongya Zhang, Huijue Jia, Qiang Feng, Donghui Wang, Di Liang, Xiangni Wu, Junhua Li, Longqing Tang, Yin Li,[...]. Nat Med 2015
663
7

Role of gut microbiota in type 2 diabetes pathophysiology.
Manoj Gurung, Zhipeng Li, Hannah You, Richard Rodrigues, Donald B Jump, Andrey Morgun, Natalia Shulzhenko. EBioMedicine 2020
186
7


Human gut microbiome viewed across age and geography.
Tanya Yatsunenko, Federico E Rey, Mark J Manary, Indi Trehan, Maria Gloria Dominguez-Bello, Monica Contreras, Magda Magris, Glida Hidalgo, Robert N Baldassano, Andrey P Anokhin,[...]. Nature 2012
7

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation.
Nicholas Arpaia, Clarissa Campbell, Xiying Fan, Stanislav Dikiy, Joris van der Veeken, Paul deRoos, Hui Liu, Justin R Cross, Klaus Pfeffer, Paul J Coffer,[...]. Nature 2013
7

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.
Carlotta De Filippo, Duccio Cavalieri, Monica Di Paola, Matteo Ramazzotti, Jean Baptiste Poullet, Sebastien Massart, Silvia Collini, Giuseppe Pieraccini, Paolo Lionetti. Proc Natl Acad Sci U S A 2010
7

Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug.
Hao Wu, Eduardo Esteve, Valentina Tremaroli, Muhammad Tanweer Khan, Robert Caesar, Louise Mannerås-Holm, Marcus Ståhlman, Lisa M Olsson, Matteo Serino, Mercè Planas-Fèlix,[...]. Nat Med 2017
552
7

Gut microbiota dysbiosis contributes to the development of hypertension.
Jing Li, Fangqing Zhao, Yidan Wang, Junru Chen, Jie Tao, Gang Tian, Shouling Wu, Wenbin Liu, Qinghua Cui, Bin Geng,[...]. Microbiome 2017
480
7

Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition.
Louise B Thingholm, Malte C Rühlemann, Manja Koch, Brie Fuqua, Guido Laucke, Ruwen Boehm, Corinna Bang, Eric A Franzosa, Matthias Hübenthal, Ali Rahnavard,[...]. Cell Host Microbe 2019
69
10

An integrated catalog of reference genes in the human gut microbiome.
Junhua Li, Huijue Jia, Xianghang Cai, Huanzi Zhong, Qiang Feng, Shinichi Sunagawa, Manimozhiyan Arumugam, Jens Roat Kultima, Edi Prifti, Trine Nielsen,[...]. Nat Biotechnol 2014
822
7

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients.
Harry Sokol, Bénédicte Pigneur, Laurie Watterlot, Omar Lakhdari, Luis G Bermúdez-Humarán, Jean-Jacques Gratadoux, Sébastien Blugeon, Chantal Bridonneau, Jean-Pierre Furet, Gérard Corthier,[...]. Proc Natl Acad Sci U S A 2008
7

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
Patrick D Schloss, Sarah L Westcott, Thomas Ryabin, Justine R Hall, Martin Hartmann, Emily B Hollister, Ryan A Lesniewski, Brian B Oakley, Donovan H Parks, Courtney J Robinson,[...]. Appl Environ Microbiol 2009
6

The human microbiome project.
Peter J Turnbaugh, Ruth E Ley, Micah Hamady, Claire M Fraser-Liggett, Rob Knight, Jeffrey I Gordon. Nature 2007
6


A core gut microbiome in obese and lean twins.
Peter J Turnbaugh, Micah Hamady, Tanya Yatsunenko, Brandi L Cantarel, Alexis Duncan, Ruth E Ley, Mitchell L Sogin, William J Jones, Bruce A Roe, Jason P Affourtit,[...]. Nature 2009
6

Personalized Nutrition by Prediction of Glycemic Responses.
David Zeevi, Tal Korem, Niv Zmora, David Israeli, Daphna Rothschild, Adina Weinberger, Orly Ben-Yacov, Dar Lador, Tali Avnit-Sagi, Maya Lotan-Pompan,[...]. Cell 2015
884
6

T cell-mediated regulation of the microbiota protects against obesity.
Charisse Petersen, Rickesha Bell, Kendra A Klag, Soh-Hyun Lee, Raymond Soto, Arevik Ghazaryan, Kaitlin Buhrke, H Atakan Ekiz, Kyla S Ost, Sihem Boudina,[...]. Science 2019
84
7

Gut Microbial Metabolite TMAO Enhances Platelet Hyperreactivity and Thrombosis Risk.
Weifei Zhu, Jill C Gregory, Elin Org, Jennifer A Buffa, Nilaksh Gupta, Zeneng Wang, Lin Li, Xiaoming Fu, Yuping Wu, Margarete Mehrabian,[...]. Cell 2016
666
6

Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk.
W H Wilson Tang, Zeneng Wang, Bruce S Levison, Robert A Koeth, Earl B Britt, Xiaoming Fu, Yuping Wu, Stanley L Hazen. N Engl J Med 2013
6

Host-gut microbiota metabolic interactions.
Jeremy K Nicholson, Elaine Holmes, James Kinross, Remy Burcelin, Glenn Gibson, Wei Jia, Sven Pettersson. Science 2012
6

Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology.
Maria Carlota Dao, Amandine Everard, Judith Aron-Wisnewsky, Nataliya Sokolovska, Edi Prifti, Eric O Verger, Brandon D Kayser, Florence Levenez, Julien Chilloux, Lesley Hoyles,[...]. Gut 2016
714
6

The Human Intestinal Microbiome in Health and Disease.
Susan V Lynch, Oluf Pedersen. N Engl J Med 2016
997
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.