A citation-based method for searching scientific literature

Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun, Andrew Gordus, Michael B Orger, Ruben Portugues, Florian Engert, John J Macklin, Alessandro Filosa, Aman Aggarwal, Rex A Kerr, Ryousuke Takagi, Sebastian Kracun, Eiji Shigetomi, Baljit S Khakh, Herwig Baier, Leon Lagnado, Samuel S-H Wang, Cornelia I Bargmann, Bruce E Kimmel, Vivek Jayaraman, Karel Svoboda, Douglas S Kim, Eric R Schreiter, Loren L Looger. J Neurosci 2012
Times Cited: 776







List of co-cited articles
760 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
46

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
33


High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
350
24

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
848
22

Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.
A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
18

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
458
16

Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.
Yvonne N Tallini, Masamichi Ohkura, Bum-Rak Choi, Guangju Ji, Keiji Imoto, Robert Doran, Jane Lee, Patricia Plan, Jason Wilson, Hong-Bo Xin,[...]. Proc Natl Acad Sci U S A 2006
329
12

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
438
12

Rational Engineering of XCaMPs, a Multicolor GECI Suite for In Vivo Imaging of Complex Brain Circuit Dynamics.
Masatoshi Inoue, Atsuya Takeuchi, Satoshi Manita, Shin-Ichiro Horigane, Masayuki Sakamoto, Ryosuke Kawakami, Kazushi Yamaguchi, Kouhei Otomo, Hiroyuki Yokoyama, Ryang Kim,[...]. Cell 2019
108
11

Circularly permuted green fluorescent proteins engineered to sense Ca2+.
T Nagai, A Sawano, E S Park, A Miyawaki. Proc Natl Acad Sci U S A 2001
716
11

Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors.
Tommaso Patriarchi, Jounhong Ryan Cho, Katharina Merten, Mark W Howe, Aaron Marley, Wei-Hong Xiong, Robert W Folk, Gerard Joey Broussard, Ruqiang Liang, Min Jee Jang,[...]. Science 2018
392
11

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
659
11

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
328
10

Circular permutation and receptor insertion within green fluorescent proteins.
G S Baird, D A Zacharias, R Y Tsien. Proc Natl Acad Sci U S A 1999
636
10

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
523
10

Putting a finishing touch on GECIs.
Tobias Rose, Pieter M Goltstein, Ruben Portugues, Oliver Griesbeck. Front Mol Neurosci 2014
95
9

Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design.
Jasper Akerboom, Jonathan D Vélez Rivera, María M Rodríguez Guilbe, Elisa C Alfaro Malavé, Hector H Hernandez, Lin Tian, S Andrew Hires, Jonathan S Marvin, Loren L Looger, Eric R Schreiter. J Biol Chem 2009
170
8

A genetically encoded near-infrared fluorescent calcium ion indicator.
Yong Qian, Kiryl D Piatkevich, Benedict Mc Larney, Ahmed S Abdelfattah, Sohum Mehta, Mitchell H Murdock, Sven Gottschalk, Rosana S Molina, Wei Zhang, Yingche Chen,[...]. Nat Methods 2019
92
8

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
537
8

Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins.
Takeharu Nagai, Shuichi Yamada, Takashi Tominaga, Michinori Ichikawa, Atsushi Miyawaki. Proc Natl Acad Sci U S A 2004
774
8

Chemical calcium indicators.
R Madelaine Paredes, Julie C Etzler, Lora Talley Watts, Wei Zheng, James D Lechleiter. Methods 2008
340
8

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
8

Improved calcium sensor GCaMP-X overcomes the calcium channel perturbations induced by the calmodulin in GCaMP.
Yaxiong Yang, Nan Liu, Yuanyuan He, Yuxia Liu, Lin Ge, Linzhi Zou, Sen Song, Wei Xiong, Xiaodong Liu. Nat Commun 2018
91
8

Rational design of a high-affinity, fast, red calcium indicator R-CaMP2.
Masatoshi Inoue, Atsuya Takeuchi, Shin-ichiro Horigane, Masamichi Ohkura, Keiko Gengyo-Ando, Hajime Fujii, Satoshi Kamijo, Sayaka Takemoto-Kimura, Masanobu Kano, Junichi Nakai,[...]. Nat Methods 2015
157
7

Fast GCaMPs for improved tracking of neuronal activity.
Xiaonan R Sun, Aleksandra Badura, Diego A Pacheco, Laura A Lynch, Eve R Schneider, Matthew P Taylor, Ian B Hogue, Lynn W Enquist, Mala Murthy, Samuel S-H Wang. Nat Commun 2013
82
8

Genetically encoded green fluorescent Ca2+ indicators with improved detectability for neuronal Ca2+ signals.
Masamichi Ohkura, Takuya Sasaki, Junko Sadakari, Keiko Gengyo-Ando, Yuko Kagawa-Nagamura, Chiaki Kobayashi, Yuji Ikegaya, Junichi Nakai. PLoS One 2012
150
7

Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators.
Benjamin F Fosque, Yi Sun, Hod Dana, Chao-Tsung Yang, Tomoko Ohyama, Michael R Tadross, Ronak Patel, Marta Zlatic, Douglas S Kim, Misha B Ahrens,[...]. Science 2015
232
7

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
568
7

An expanded palette of dopamine sensors for multiplex imaging in vivo.
Tommaso Patriarchi, Ali Mohebi, Junqing Sun, Aaron Marley, Ruqiang Liang, Chunyang Dong, Kyle Puhger, Grace Or Mizuno, Carolyn M Davis, Brian Wiltgen,[...]. Nat Methods 2020
57
12

Population imaging of neural activity in awake behaving mice.
Kiryl D Piatkevich, Seth Bensussen, Hua-An Tseng, Sanaya N Shroff, Violeta Gisselle Lopez-Huerta, Demian Park, Erica E Jung, Or A Shemesh, Christoph Straub, Howard J Gritton,[...]. Nature 2019
95
6

Ultrafast Two-Photon Imaging of a High-Gain Voltage Indicator in Awake Behaving Mice.
Vincent Villette, Mariya Chavarha, Ivan K Dimov, Jonathan Bradley, Lagnajeet Pradhan, Benjamin Mathieu, Stephen W Evans, Simon Chamberland, Dongqing Shi, Renzhi Yang,[...]. Cell 2019
117
6

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
210
6

High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor.
Yiyang Gong, Cheng Huang, Jin Zhong Li, Benjamin F Grewe, Yanping Zhang, Stephan Eismann, Mark J Schnitzer. Science 2015
250
6

A genetically encoded fluorescent sensor for in vivo imaging of GABA.
Jonathan S Marvin, Yoshiteru Shimoda, Vincent Magloire, Marco Leite, Takashi Kawashima, Thomas P Jensen, Ilya Kolb, Erika L Knott, Ondrej Novak, Kaspar Podgorski,[...]. Nat Methods 2019
137
6

Calcium signaling.
David E Clapham. Cell 2007
6

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
670
6

Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications.
O Griesbeck, G S Baird, R E Campbell, D A Zacharias, R Y Tsien. J Biol Chem 2001
783
6

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
6

All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins.
Daniel R Hochbaum, Yongxin Zhao, Samouil L Farhi, Nathan Klapoetke, Christopher A Werley, Vikrant Kapoor, Peng Zou, Joel M Kralj, Dougal Maclaurin, Niklas Smedemark-Margulies,[...]. Nat Methods 2014
429
6

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain.
Jeffrey N Stirman, Ikuko T Smith, Michael W Kudenov, Spencer L Smith. Nat Biotechnol 2016
155
6


A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
265
6

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu,[...]. Science 2019
176
5

A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.
Yi Shen, Hod Dana, Ahmed S Abdelfattah, Ronak Patel, Jamien Shea, Rosana S Molina, Bijal Rawal, Vladimir Rancic, Yu-Fen Chang, Lanshi Wu,[...]. BMC Biol 2018
52
9


Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.
Yoav Adam, Jeong J Kim, Shan Lou, Yongxin Zhao, Michael E Xie, Daan Brinks, Hao Wu, Mohammed A Mostajo-Radji, Simon Kheifets, Vicente Parot,[...]. Nature 2019
133
5

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo.
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
100
5

Imaging brain electric signals with genetically targeted voltage-sensitive fluorescent proteins.
Walther Akemann, Hiroki Mutoh, Amélie Perron, Jean Rossier, Thomas Knöpfel. Nat Methods 2010
174
5

A genetically encoded fluorescent acetylcholine indicator for in vitro and in vivo studies.
Miao Jing, Peng Zhang, Guangfu Wang, Jiesi Feng, Lukas Mesik, Jianzhi Zeng, Huoqing Jiang, Shaohua Wang, Jess C Looby, Nick A Guagliardo,[...]. Nat Biotechnol 2018
153
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.