A citation-based method for searching scientific literature

Bjorn T Adalsteinsson, Haukur Gudnason, Thor Aspelund, Tamara B Harris, Lenore J Launer, Gudny Eiriksdottir, Albert V Smith, Vilmundur Gudnason. PLoS One 2012
Times Cited: 137







List of co-cited articles
635 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
39

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
615
34


Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
15

Reference-free cell mixture adjustments in analysis of DNA methylation data.
Eugene Andres Houseman, John Molitor, Carmen J Marsit. Bioinformatics 2014
250
15

Factors underlying variable DNA methylation in a human community cohort.
Lucia L Lam, Eldon Emberly, Hunter B Fraser, Sarah M Neumann, Edith Chen, Gregory E Miller, Michael S Kobor. Proc Natl Acad Sci U S A 2012
260
13

Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis.
Devin C Koestler, Brock Christensen, Margaret R Karagas, Carmen J Marsit, Scott M Langevin, Karl T Kelsey, John K Wiencke, E Andres Houseman. Epigenetics 2013
147
12


Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
11

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
Yun Liu, Martin J Aryee, Leonid Padyukov, M Daniele Fallin, Espen Hesselberg, Arni Runarsson, Lovisa Reinius, Nathalie Acevedo, Margaret Taub, Marcus Ronninger,[...]. Nat Biotechnol 2013
555
10

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
801
10

Epigenome-wide association studies without the need for cell-type composition.
James Zou, Christoph Lippert, David Heckerman, Martin Aryee, Jennifer Listgarten. Nat Methods 2014
128
10



Persistent epigenetic differences associated with prenatal exposure to famine in humans.
Bastiaan T Heijmans, Elmar W Tobi, Aryeh D Stein, Hein Putter, Gerard J Blauw, Ezra S Susser, P Eline Slagboom, L H Lumey. Proc Natl Acad Sci U S A 2008
8

450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy.
Bonnie R Joubert, Siri E Håberg, Roy M Nilsen, Xuting Wang, Stein E Vollset, Susan K Murphy, Zhiqing Huang, Cathrine Hoyo, Øivind Midttun, Lea A Cupul-Uicab,[...]. Environ Health Perspect 2012
452
8

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
8

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Andrew E Teschendorff, Francesco Marabita, Matthias Lechner, Thomas Bartlett, Jesper Tegner, David Gomez-Cabrero, Stephan Beck. Bioinformatics 2013
723
8


Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome.
Juan Sandoval, Holger Heyn, Sebastian Moran, Jordi Serra-Musach, Miguel A Pujana, Marina Bibikova, Manel Esteller. Epigenetics 2011
651
8

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
8

Aging effects on DNA methylation modules in human brain and blood tissue.
Steve Horvath, Yafeng Zhang, Peter Langfelder, René S Kahn, Marco P M Boks, Kristel van Eijk, Leonard H van den Berg, Roel A Ophoff. Genome Biol 2012
350
8

Charting a dynamic DNA methylation landscape of the human genome.
Michael J Ziller, Hongcang Gu, Fabian Müller, Julie Donaghey, Linus T-Y Tsai, Oliver Kohlbacher, Philip L De Jager, Evan D Rosen, David A Bennett, Bradley E Bernstein,[...]. Nature 2013
756
7

Variation, patterns, and temporal stability of DNA methylation: considerations for epigenetic epidemiology.
Rudolf P Talens, Dorret I Boomsma, Elmar W Tobi, Dennis Kremer, J Wouter Jukema, Gonneke Willemsen, Hein Putter, P Eline Slagboom, Bastiaan T Heijmans. FASEB J 2010
219
7

Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood.
Matthew N Davies, Manuela Volta, Ruth Pidsley, Katie Lunnon, Abhishek Dixit, Simon Lovestone, Cristian Coarfa, R Alan Harris, Aleksandar Milosavljevic, Claire Troakes,[...]. Genome Biol 2012
445
7

DNA methylation and body-mass index: a genome-wide analysis.
Katherine J Dick, Christopher P Nelson, Loukia Tsaprouni, Johanna K Sandling, Dylan Aïssi, Simone Wahl, Eshwar Meduri, Pierre-Emmanuel Morange, France Gagnon, Harald Grallert,[...]. Lancet 2014
472
7

Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context.
Brock C Christensen, E Andres Houseman, Carmen J Marsit, Shichun Zheng, Margaret R Wrensch, Joseph L Wiemels, Heather H Nelson, Margaret R Karagas, James F Padbury, Raphael Bueno,[...]. PLoS Genet 2009
667
7

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
967
7

Reference-free deconvolution of DNA methylation data and mediation by cell composition effects.
E Andres Houseman, Molly L Kile, David C Christiani, Tan A Ince, Karl T Kelsey, Carmen J Marsit. BMC Bioinformatics 2016
100
7

Epigenetic regulation of the glucocorticoid receptor in human brain associates with childhood abuse.
Patrick O McGowan, Aya Sasaki, Ana C D'Alessio, Sergiy Dymov, Benoit Labonté, Moshe Szyf, Gustavo Turecki, Michael J Meaney. Nat Neurosci 2009
6

Epigenome-wide association studies for common human diseases.
Vardhman K Rakyan, Thomas A Down, David J Balding, Stephan Beck. Nat Rev Genet 2011
734
6

Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies.
Robert Lowe, Carolina Gemma, Huriya Beyan, Mohammed I Hawa, Alexandra Bazeos, R David Leslie, Alexandre Montpetit, Vardhman K Rakyan, Sreeram V Ramagopalan. Epigenetics 2013
101
6

Tobacco smoking leads to extensive genome-wide changes in DNA methylation.
Sonja Zeilinger, Brigitte Kühnel, Norman Klopp, Hansjörg Baurecht, Anja Kleinschmidt, Christian Gieger, Stephan Weidinger, Eva Lattka, Jerzy Adamski, Annette Peters,[...]. PLoS One 2013
450
6

Tobacco-smoking-related differential DNA methylation: 27K discovery and replication.
Lutz P Breitling, Rongxi Yang, Bernhard Korn, Barbara Burwinkel, Hermann Brenner. Am J Hum Genet 2011
432
6


Cigarette smoking reduces DNA methylation levels at multiple genomic loci but the effect is partially reversible upon cessation.
Loukia G Tsaprouni, Tsun-Po Yang, Jordana Bell, Katherine J Dick, Stavroula Kanoni, James Nisbet, Ana Viñuela, Elin Grundberg, Christopher P Nelson, Eshwar Meduri,[...]. Epigenetics 2014
181
6

DNA methylation age of blood predicts all-cause mortality in later life.
Riccardo E Marioni, Sonia Shah, Allan F McRae, Brian H Chen, Elena Colicino, Sarah E Harris, Jude Gibson, Anjali K Henders, Paul Redmond, Simon R Cox,[...]. Genome Biol 2015
496
6

Epigenetic differences arise during the lifetime of monozygotic twins.
Mario F Fraga, Esteban Ballestar, Maria F Paz, Santiago Ropero, Fernando Setien, Maria L Ballestar, Damia Heine-Suñer, Juan C Cigudosa, Miguel Urioste, Javier Benitez,[...]. Proc Natl Acad Sci U S A 2005
6

Comprehensive analysis of DNA methylation data with RnBeads.
Yassen Assenov, Fabian Müller, Pavlo Lutsik, Jörn Walter, Thomas Lengauer, Christoph Bock. Nat Methods 2014
355
6

Intra-individual change over time in DNA methylation with familial clustering.
Hans T Bjornsson, Martin I Sigurdsson, M Daniele Fallin, Rafael A Irizarry, Thor Aspelund, Hengmi Cui, Wenqiang Yu, Michael A Rongione, Tomas J Ekström, Tamara B Harris,[...]. JAMA 2008
460
5

Obesity related methylation changes in DNA of peripheral blood leukocytes.
Xiaoling Wang, Haidong Zhu, Harold Snieder, Shaoyong Su, David Munn, Gregory Harshfield, Bernard L Maria, Yanbin Dong, Frank Treiber, Bernard Gutin,[...]. BMC Med 2010
135
5

Personalized epigenomic signatures that are stable over time and covary with body mass index.
Andrew P Feinberg, Rafael A Irizarry, Delphine Fradin, Martin J Aryee, Peter Murakami, Thor Aspelund, Gudny Eiriksdottir, Tamara B Harris, Lenore Launer, Vilmundur Gudnason,[...]. Sci Transl Med 2010
221
5

Global methylation profiles in DNA from different blood cell types.
Hui-Chen Wu, Lissette Delgado-Cruzata, Julie D Flom, Maya Kappil, Jennifer S Ferris, Yuyan Liao, Regina M Santella, Mary Beth Terry. Epigenetics 2011
115
5

Individual variation and longitudinal pattern of genome-wide DNA methylation from birth to the first two years of life.
Deli Wang, Xin Liu, Ying Zhou, Hehuang Xie, Xiumei Hong, Hui-Ju Tsai, Guoying Wang, Rong Liu, Xiaobin Wang. Epigenetics 2012
53
9

Duration of breastfeeding and gender are associated with methylation of the LEPTIN gene in very young children.
Sylvia A Obermann-Borst, Paul H C Eilers, Elmar W Tobi, Frank H de Jong, P Eline Slagboom, Bastiaan T Heijmans, Régine P M Steegers-Theunissen. Pediatr Res 2013
57
8

Age-associated DNA methylation in pediatric populations.
Reid S Alisch, Benjamin G Barwick, Pankaj Chopra, Leila K Myrick, Glen A Satten, Karen N Conneely, Stephen T Warren. Genome Res 2012
228
5

DNA methylation patterns in cord blood DNA and body size in childhood.
Caroline L Relton, Alexandra Groom, Beate St Pourcain, Adrian E Sayers, Daniel C Swan, Nicholas D Embleton, Mark S Pearce, Susan M Ring, Kate Northstone, Jon H Tobias,[...]. PLoS One 2012
101
5

DNA methylation in white blood cells: association with risk factors in epidemiologic studies.
Mary Beth Terry, Lissette Delgado-Cruzata, Neomi Vin-Raviv, Hui Chen Wu, Regina M Santella. Epigenetics 2011
237
5

DNA methylation differences after exposure to prenatal famine are common and timing- and sex-specific.
Elmar W Tobi, L H Lumey, Rudolf P Talens, Dennis Kremer, Hein Putter, Aryeh D Stein, P Eline Slagboom, Bastiaan T Heijmans. Hum Mol Genet 2009
663
5

Epigenetic modifications and human disease.
Anna Portela, Manel Esteller. Nat Biotechnol 2010
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.