Stefan Heckmann, Jiri Macas, Katrin Kumke, Jörg Fuchs, Veit Schubert, Lu Ma, Petr Novák, Pavel Neumann, Stefan Taudien, Matthias Platzer, Andreas Houben. Plant J 2013
Times Cited: 60
Times Cited: 60
Times Cited
Times Co-cited
Similarity
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.
Petr Novák, Pavel Neumann, Jiří Pech, Jaroslav Steinhaisl, Jiří Macas. Bioinformatics 2013
Petr Novák, Pavel Neumann, Jiří Pech, Jaroslav Steinhaisl, Jiří Macas. Bioinformatics 2013
38
Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin.
André Marques, Tiago Ribeiro, Pavel Neumann, Jiří Macas, Petr Novák, Veit Schubert, Marco Pellino, Jörg Fuchs, Wei Ma, Markus Kuhlmann,[...]. Proc Natl Acad Sci U S A 2015
André Marques, Tiago Ribeiro, Pavel Neumann, Jiří Macas, Petr Novák, Veit Schubert, Marco Pellino, Jörg Fuchs, Wei Ma, Markus Kuhlmann,[...]. Proc Natl Acad Sci U S A 2015
39
Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis.
Daniël P Melters, Leocadia V Paliulis, Ian F Korf, Simon W L Chan. Chromosome Res 2012
Daniël P Melters, Leocadia V Paliulis, Ian F Korf, Simon W L Chan. Chromosome Res 2012
36
Stretching the rules: monocentric chromosomes with multiple centromere domains.
Pavel Neumann, Alice Navrátilová, Elizabeth Schroeder-Reiter, Andrea Koblížková, Veronika Steinbauerová, Eva Chocholová, Petr Novák, Gerhard Wanner, Jiří Macas. PLoS Genet 2012
Pavel Neumann, Alice Navrátilová, Elizabeth Schroeder-Reiter, Andrea Koblížková, Veronika Steinbauerová, Eva Chocholová, Petr Novák, Gerhard Wanner, Jiří Macas. PLoS Genet 2012
33
Alternative meiotic chromatid segregation in the holocentric plant Luzula elegans.
Stefan Heckmann, Maja Jankowska, Veit Schubert, Katrin Kumke, Wei Ma, Andreas Houben. Nat Commun 2014
Stefan Heckmann, Maja Jankowska, Veit Schubert, Katrin Kumke, Wei Ma, Andreas Houben. Nat Commun 2014
30
Repeatless and repeat-based centromeres in potato: implications for centromere evolution.
Zhiyun Gong, Yufeng Wu, Andrea Koblízková, Giovana A Torres, Kai Wang, Marina Iovene, Pavel Neumann, Wenli Zhang, Petr Novák, C Robin Buell,[...]. Plant Cell 2012
Zhiyun Gong, Yufeng Wu, Andrea Koblízková, Giovana A Torres, Kai Wang, Marina Iovene, Pavel Neumann, Wenli Zhang, Petr Novák, C Robin Buell,[...]. Plant Cell 2012
26
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.
Petr Novák, Pavel Neumann, Jirí Macas. BMC Bioinformatics 2010
Petr Novák, Pavel Neumann, Jirí Macas. BMC Bioinformatics 2010
25
High-throughput analysis of the satellitome illuminates satellite DNA evolution.
Francisco J Ruiz-Ruano, María Dolores López-León, Josefa Cabrero, Juan Pedro M Camacho. Sci Rep 2016
Francisco J Ruiz-Ruano, María Dolores López-León, Josefa Cabrero, Juan Pedro M Camacho. Sci Rep 2016
25
Visualization of diffuse centromeres with centromere-specific histone H3 in the holocentric plant Luzula nivea.
Kiyotaka Nagaki, Kazunari Kashihara, Minoru Murata. Plant Cell 2005
Kiyotaka Nagaki, Kazunari Kashihara, Minoru Murata. Plant Cell 2005
23
Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin.
Miroslav Plohl, Andrea Luchetti, Nevenka Mestrović, Barbara Mantovani. Gene 2008
Miroslav Plohl, Andrea Luchetti, Nevenka Mestrović, Barbara Mantovani. Gene 2008
23
Holocentric chromosomes of Luzula elegans are characterized by a longitudinal centromere groove, chromosome bending, and a terminal nucleolus organizer region.
S Heckmann, E Schroeder-Reiter, K Kumke, L Ma, K Nagaki, M Murata, G Wanner, A Houben. Cytogenet Genome Res 2011
S Heckmann, E Schroeder-Reiter, K Kumke, L Ma, K Nagaki, M Murata, G Wanner, A Houben. Cytogenet Genome Res 2011
34
23
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.
Daniël P Melters, Keith R Bradnam, Hugh A Young, Natalie Telis, Michael R May, J Graham Ruby, Robert Sebra, Paul Peluso, John Eid, David Rank,[...]. Genome Biol 2013
Daniël P Melters, Keith R Bradnam, Hugh A Young, Natalie Telis, Michael R May, J Graham Ruby, Robert Sebra, Paul Peluso, John Eid, David Rank,[...]. Genome Biol 2013
21
Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula.
Jirí Macas, Pavel Neumann, Alice Navrátilová. BMC Genomics 2007
Jirí Macas, Pavel Neumann, Alice Navrátilová. BMC Genomics 2007
21
Chiasmatic and achiasmatic inverted meiosis of plants with holocentric chromosomes.
Gabriela Cabral, André Marques, Veit Schubert, Andrea Pedrosa-Harand, Peter Schlögelhofer. Nat Commun 2014
Gabriela Cabral, André Marques, Veit Schubert, Andrea Pedrosa-Harand, Peter Schlögelhofer. Nat Commun 2014
28
Centromere identity from the DNA point of view.
Miroslav Plohl, Nevenka Meštrović, Brankica Mravinac. Chromosoma 2014
Miroslav Plohl, Nevenka Meštrović, Brankica Mravinac. Chromosoma 2014
21
Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species.
Tiago Ribeiro, André Marques, Petr Novák, Veit Schubert, André L L Vanzela, Jiri Macas, Andreas Houben, Andrea Pedrosa-Harand. Chromosoma 2017
Tiago Ribeiro, André Marques, Petr Novák, Veit Schubert, André L L Vanzela, Jiri Macas, Andreas Houben, Andrea Pedrosa-Harand. Chromosoma 2017
48
Holocentromeres are dispersed point centromeres localized at transcription factor hotspots.
Florian A Steiner, Steven Henikoff. Elife 2014
Florian A Steiner, Steven Henikoff. Elife 2014
20
The ultrastructure of mono- and holocentric plant centromeres: an immunological investigation by structured illumination microscopy and scanning electron microscopy.
Gerhard Wanner, Elizabeth Schroeder-Reiter, Wei Ma, Andreas Houben, Veit Schubert. Chromosoma 2015
Gerhard Wanner, Elizabeth Schroeder-Reiter, Wei Ma, Andreas Houben, Veit Schubert. Chromosoma 2015
42
Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species.
Pavel Neumann, Zuzana Pavlíková, Andrea Koblížková, Iva Fuková, Veronika Jedličková, Petr Novák, Jiří Macas. Mol Biol Evol 2015
Pavel Neumann, Zuzana Pavlíková, Andrea Koblížková, Iva Fuková, Veronika Jedličková, Petr Novák, Jiří Macas. Mol Biol Evol 2015
28
Recurrent loss of CenH3 is associated with independent transitions to holocentricity in insects.
Ines A Drinnenberg, Dakota deYoung, Steven Henikoff, Harmit Singh Malik. Elife 2014
Ines A Drinnenberg, Dakota deYoung, Steven Henikoff, Harmit Singh Malik. Elife 2014
20
An inverse relationship to germline transcription defines centromeric chromatin in C. elegans.
Reto Gassmann, Andreas Rechtsteiner, Karen W Yuen, Andrew Muroyama, Thea Egelhofer, Laura Gaydos, Francie Barron, Paul Maddox, Anthony Essex, Joost Monen,[...]. Nature 2012
Reto Gassmann, Andreas Rechtsteiner, Karen W Yuen, Andrew Muroyama, Thea Egelhofer, Laura Gaydos, Francie Barron, Paul Maddox, Anthony Essex, Joost Monen,[...]. Nature 2012
18
TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.
Petr Novák, Laura Ávila Robledillo, Andrea Koblížková, Iva Vrbová, Pavel Neumann, Jirí Macas. Nucleic Acids Res 2017
Petr Novák, Laura Ávila Robledillo, Andrea Koblížková, Iva Vrbová, Pavel Neumann, Jirí Macas. Nucleic Acids Res 2017
18
Plant centromeric retrotransposons: a structural and cytogenetic perspective.
Pavel Neumann, Alice Navrátilová, Andrea Koblížková, Eduard Kejnovský, Eva Hřibová, Roman Hobza, Alex Widmer, Jaroslav Doležel, Jiří Macas. Mob DNA 2011
Pavel Neumann, Alice Navrátilová, Andrea Koblížková, Eduard Kejnovský, Eva Hřibová, Roman Hobza, Alex Widmer, Jaroslav Doležel, Jiří Macas. Mob DNA 2011
16
The centromere paradox: stable inheritance with rapidly evolving DNA.
S Henikoff, K Ahmad, H S Malik. Science 2001
S Henikoff, K Ahmad, H S Malik. Science 2001
16
Restructuring of Holocentric Centromeres During Meiosis in the Plant Rhynchospora pubera.
André Marques, Veit Schubert, Andreas Houben, Andrea Pedrosa-Harand. Genetics 2016
André Marques, Veit Schubert, Andreas Houben, Andrea Pedrosa-Harand. Genetics 2016
50
Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia.
Jiří Macas, Eduard Kejnovský, Pavel Neumann, Petr Novák, Andrea Koblížková, Boris Vyskot. PLoS One 2011
Jiří Macas, Eduard Kejnovský, Pavel Neumann, Petr Novák, Andrea Koblížková, Boris Vyskot. PLoS One 2011
15
PlantSat: a specialized database for plant satellite repeats.
Jirí Macas, Tibor Mészáros, Marcela Nouzová. Bioinformatics 2002
Jirí Macas, Tibor Mészáros, Marcela Nouzová. Bioinformatics 2002
15
Anti-phosphorylated histone H2AThr120: a universal microscopic marker for centromeric chromatin of mono- and holocentric plant species.
D Demidov, V Schubert, K Kumke, O Weiss, R Karimi-Ashtiyani, J Buttlar, S Heckmann, G Wanner, Q Dong, F Han,[...]. Cytogenet Genome Res 2014
D Demidov, V Schubert, K Kumke, O Weiss, R Karimi-Ashtiyani, J Buttlar, S Heckmann, G Wanner, Q Dong, F Han,[...]. Cytogenet Genome Res 2014
30
Differential role of CENP-A in the segregation of holocentric C. elegans chromosomes during meiosis and mitosis.
Joost Monen, Paul S Maddox, Francie Hyndman, Karen Oegema, Arshad Desai. Nat Cell Biol 2005
Joost Monen, Paul S Maddox, Francie Hyndman, Karen Oegema, Arshad Desai. Nat Cell Biol 2005
15
In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.
Jiří Macas, Petr Novák, Jaume Pellicer, Jana Čížková, Andrea Koblížková, Pavel Neumann, Iva Fuková, Jaroslav Doležel, Laura J Kelly, Ilia J Leitch. PLoS One 2015
Jiří Macas, Petr Novák, Jaume Pellicer, Jana Čížková, Andrea Koblížková, Pavel Neumann, Iva Fuková, Jaroslav Doležel, Laura J Kelly, Ilia J Leitch. PLoS One 2015
15
A histone-H3-like protein in C. elegans.
B J Buchwitz, K Ahmad, L L Moore, M B Roth, S Henikoff. Nature 1999
B J Buchwitz, K Ahmad, L L Moore, M B Roth, S Henikoff. Nature 1999
13
Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats.
Jirí Macas, Andrea Koblízková, Alice Navrátilová, Pavel Neumann. Gene 2009
Jirí Macas, Andrea Koblízková, Alice Navrátilová, Pavel Neumann. Gene 2009
14
High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize.
Fangpu Han, Jonathan C Lamb, James A Birchler. Proc Natl Acad Sci U S A 2006
Fangpu Han, Jonathan C Lamb, James A Birchler. Proc Natl Acad Sci U S A 2006
13
13
CENH3 interacts with the centromeric retrotransposon cereba and GC-rich satellites and locates to centromeric substructures in barley.
Andreas Houben, Elizabeth Schroeder-Reiter, Kiyotaka Nagaki, Shuhei Nasuda, Gerhard Wanner, Minoru Murata, Takashi R Endo. Chromosoma 2007
Andreas Houben, Elizabeth Schroeder-Reiter, Kiyotaka Nagaki, Shuhei Nasuda, Gerhard Wanner, Minoru Murata, Takashi R Endo. Chromosoma 2007
13
Epigenetic regulation of centromeric chromatin: old dogs, new tricks?
Robin C Allshire, Gary H Karpen. Nat Rev Genet 2008
Robin C Allshire, Gary H Karpen. Nat Rev Genet 2008
13
Neocentrics and holokinetics (holocentrics): chromosomes out of the centromeric rules.
M Guerra, G Cabral, M Cuacos, M González-García, M González-Sánchez, J Vega, M J Puertas. Cytogenet Genome Res 2010
M Guerra, G Cabral, M Cuacos, M González-García, M González-Sánchez, J Vega, M J Puertas. Cytogenet Genome Res 2010
21
Atypical centromeres in plants-what they can tell us.
Maria Cuacos, F Chris H Franklin, Stefan Heckmann. Front Plant Sci 2015
Maria Cuacos, F Chris H Franklin, Stefan Heckmann. Front Plant Sci 2015
27
13
Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification.
Pavel Neumann, Petr Novák, Nina Hoštáková, Jiří Macas. Mob DNA 2019
Pavel Neumann, Petr Novák, Nina Hoštáková, Jiří Macas. Mob DNA 2019
13
Mitotic Spindle Attachment to the Holocentric Chromosomes of Cuscuta europaea Does Not Correlate With the Distribution of CENH3 Chromatin.
Ludmila Oliveira, Pavel Neumann, Tae-Soo Jang, Sonja Klemme, Veit Schubert, Andrea Koblížková, Andreas Houben, Jiří Macas. Front Plant Sci 2020
Ludmila Oliveira, Pavel Neumann, Tae-Soo Jang, Sonja Klemme, Veit Schubert, Andrea Koblížková, Andreas Houben, Jiří Macas. Front Plant Sci 2020
40
Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species.
Hye-Ran Lee, Wenli Zhang, Tim Langdon, Weiwei Jin, Huihuang Yan, Zhukuan Cheng, Jiming Jiang. Proc Natl Acad Sci U S A 2005
Hye-Ran Lee, Wenli Zhang, Tim Langdon, Weiwei Jin, Huihuang Yan, Zhukuan Cheng, Jiming Jiang. Proc Natl Acad Sci U S A 2005
11
Centromeric retroelements and satellites interact with maize kinetochore protein CENH3.
Cathy Xiaoyan Zhong, Joshua B Marshall, Christopher Topp, Rebecca Mroczek, Akio Kato, Kiyotaka Nagaki, James A Birchler, Jiming Jiang, R Kelly Dawe. Plant Cell 2002
Cathy Xiaoyan Zhong, Joshua B Marshall, Christopher Topp, Rebecca Mroczek, Akio Kato, Kiyotaka Nagaki, James A Birchler, Jiming Jiang, R Kelly Dawe. Plant Cell 2002
11
Sequencing of a rice centromere uncovers active genes.
Kiyotaka Nagaki, Zhukuan Cheng, Shu Ouyang, Paul B Talbert, Mary Kim, Kristine M Jones, Steven Henikoff, C Robin Buell, Jiming Jiang. Nat Genet 2004
Kiyotaka Nagaki, Zhukuan Cheng, Shu Ouyang, Paul B Talbert, Mary Kim, Kristine M Jones, Steven Henikoff, C Robin Buell, Jiming Jiang. Nat Genet 2004
11
The differential loading of two barley CENH3 variants into distinct centromeric substructures is cell type- and development-specific.
Takayoshi Ishii, Raheleh Karimi-Ashtiyani, Ali Mohammad Banaei-Moghaddam, Veit Schubert, Jörg Fuchs, Andreas Houben. Chromosome Res 2015
Takayoshi Ishii, Raheleh Karimi-Ashtiyani, Ali Mohammad Banaei-Moghaddam, Veit Schubert, Jörg Fuchs, Andreas Houben. Chromosome Res 2015
23
The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres.
Tao Zhang, Paul B Talbert, Wenli Zhang, Yufeng Wu, Zujun Yang, Jorja G Henikoff, Steven Henikoff, Jiming Jiang. Proc Natl Acad Sci U S A 2013
Tao Zhang, Paul B Talbert, Wenli Zhang, Yufeng Wu, Zujun Yang, Jorja G Henikoff, Steven Henikoff, Jiming Jiang. Proc Natl Acad Sci U S A 2013
11
Epigenetic Histone Marks of Extended Meta-Polycentric Centromeres of Lathyrus and Pisum Chromosomes.
Pavel Neumann, Veit Schubert, Iva Fuková, Jasper E Manning, Andreas Houben, Jiří Macas. Front Plant Sci 2016
Pavel Neumann, Veit Schubert, Iva Fuková, Jasper E Manning, Andreas Houben, Jiří Macas. Front Plant Sci 2016
36
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.