A citation-based method for searching scientific literature

Roberto Feuda, Sinead C Hamilton, James O McInerney, Davide Pisani. Proc Natl Acad Sci U S A 2012
Times Cited: 101







List of co-cited articles
882 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Shedding new light on opsin evolution.
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
158
41

The opsins.
Akihisa Terakita. Genome Biol 2005
318
25

The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
60
41

Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain.
Detlev Arendt, Kristin Tessmar-Raible, Heidi Snyman, Adriaan W Dorresteijn, Joachim Wittbrodt. Science 2004
235
24

The origins of novel protein interactions during animal opsin evolution.
David C Plachetzki, Bernard M Degnan, Todd H Oakley. PLoS One 2007
75
32

The comb jelly opsins and the origins of animal phototransduction.
Roberto Feuda, Omar Rota-Stabelli, Todd H Oakley, Davide Pisani. Genome Biol Evol 2014
35
65

The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway.
David C Plachetzki, Caitlin R Fong, Todd H Oakley. Proc Biol Sci 2010
48
41

Evolution of opsins and phototransduction.
Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
209
18

Evolution and functional diversity of jellyfish opsins.
Hiroshi Suga, Volker Schmid, Walter J Gehring. Curr Biol 2008
83
20

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes.
Christine E Schnitzler, Kevin Pang, Meghan L Powers, Adam M Reitzel, Joseph F Ryan, David Simmons, Takashi Tada, Morgan Park, Jyoti Gupta, Shelise Y Brooks,[...]. BMC Biol 2012
70
22

Evolution of eyes and photoreceptor cell types.
Detlev Arendt. Int J Dev Biol 2003
223
15



Phototransduction and the evolution of photoreceptors.
Gordon L Fain, Roger Hardie, Simon B Laughlin. Curr Biol 2010
139
13

The evolution of eyes and visually guided behaviour.
Dan-Eric Nilsson. Philos Trans R Soc Lond B Biol Sci 2009
101
13

Cnidocyte discharge is regulated by light and opsin-mediated phototransduction.
David C Plachetzki, Caitlin R Fong, Todd H Oakley. BMC Biol 2012
45
26

Reconstructing the eyes of Urbilateria.
D Arendt, J Wittbrodt. Philos Trans R Soc Lond B Biol Sci 2001
106
12

Phototransduction motifs and variations.
King-Wai Yau, Roger C Hardie. Cell 2009
248
12

Blue-light-receptive cryptochrome is expressed in a sponge eye lacking neurons and opsin.
Ajna S Rivera, Nuri Ozturk, Bryony Fahey, David C Plachetzki, Bernard M Degnan, Aziz Sancar, Todd H Oakley. J Exp Biol 2012
50
24

Cephalochordate melanopsin: evolutionary linkage between invertebrate visual cells and vertebrate photosensitive retinal ganglion cells.
Mitsumasa Koyanagi, Kaoru Kubokawa, Hisao Tsukamoto, Yoshinori Shichida, Akihisa Terakita. Curr Biol 2005
158
12

Cubozoan genome illuminates functional diversification of opsins and photoreceptor evolution.
Michaela Liegertová, Jiří Pergner, Iryna Kozmiková, Peter Fabian, Antonio R Pombinho, Hynek Strnad, Jan Pačes, Čestmír Vlček, Petr Bartůněk, Zbyněk Kozmik. Sci Rep 2015
22
54

A novel Go-mediated phototransduction cascade in scallop visual cells.
D Kojima, A Terakita, T Ishikawa, Y Tsukahara, A Maeda, Y Shichida. J Biol Chem 1997
96
11

Ciliary photoreceptors in the cerebral eyes of a protostome larva.
Yale J Passamaneck, Nina Furchheim, Andreas Hejnol, Mark Q Martindale, Carsten Lüter. Evodevo 2011
42
26

Opsins and clusters of sensory G-protein-coupled receptors in the sea urchin genome.
Florian Raible, Kristin Tessmar-Raible, Enrique Arboleda, Tobias Kaller, Peer Bork, Detlev Arendt, Maria I Arnone. Dev Biol 2006
91
12

Assembly of the cnidarian camera-type eye from vertebrate-like components.
Zbynek Kozmik, Jana Ruzickova, Kristyna Jonasova, Yoshifumi Matsumoto, Pavel Vopalensky, Iryna Kozmikova, Hynek Strnad, Shoji Kawamura, Joram Piatigorsky, Vaclav Paces,[...]. Proc Natl Acad Sci U S A 2008
68
16

Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain.
Rodrigo A Velarde, Colin D Sauer, Kimberly K O Walden, Susan E Fahrbach, Hugh M Robertson. Insect Biochem Mol Biol 2005
92
11

Jellyfish vision starts with cAMP signaling mediated by opsin-G(s) cascade.
Mitsumasa Koyanagi, Kosuke Takano, Hisao Tsukamoto, Kohzoh Ohtsu, Fumio Tokunaga, Akihisa Terakita. Proc Natl Acad Sci U S A 2008
95
11

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
Stéphane Guindon, Jean-François Dufayard, Vincent Lefort, Maria Anisimova, Wim Hordijk, Olivier Gascuel. Syst Biol 2010
11

MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.
Fredrik Ronquist, Maxim Teslenko, Paul van der Mark, Daniel L Ayres, Aaron Darling, Sebastian Höhna, Bret Larget, Liang Liu, Marc A Suchard, John P Huelsenbeck. Syst Biol 2012
11

Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
11


Eye evolution: common use and independent recruitment of genetic components.
Pavel Vopalensky, Zbynek Kozmik. Philos Trans R Soc Lond B Biol Sci 2009
66
15

Molecular analysis of the amphioxus frontal eye unravels the evolutionary origin of the retina and pigment cells of the vertebrate eye.
Pavel Vopalensky, Jiri Pergner, Michaela Liegertova, Elia Benito-Gutierrez, Detlev Arendt, Zbynek Kozmik. Proc Natl Acad Sci U S A 2012
83
12

Pax 6: mastering eye morphogenesis and eye evolution.
W J Gehring, K Ikeo. Trends Genet 1999
460
10

Evidence for multiple phototransduction pathways in a reef-building coral.
Benjamin Mason, Michael Schmale, Patrick Gibbs, Margaret W Miller, Qiang Wang, Konstantin Levay, Valery Shestopalov, Vladlen Z Slepak. PLoS One 2012
25
40

The ctenophore genome and the evolutionary origins of neural systems.
Leonid L Moroz, Kevin M Kocot, Mathew R Citarella, Sohn Dosung, Tigran P Norekian, Inna S Povolotskaya, Anastasia P Grigorenko, Christopher Dailey, Eugene Berezikov, Katherine M Buckley,[...]. Nature 2014
360
10


Spectral Tuning of Phototaxis by a Go-Opsin in the Rhabdomeric Eyes of Platynereis.
Martin Gühmann, Huiyong Jia, Nadine Randel, Csaba Verasztó, Luis A Bezares-Calderón, Nico K Michiels, Shozo Yokoyama, Gáspár Jékely. Curr Biol 2015
38
26

The Dynamic Evolutionary History of Pancrustacean Eyes and Opsins.
Miriam J Henze, Todd H Oakley. Integr Comp Biol 2015
51
19

Co-expression of xenopsin and rhabdomeric opsin in photoreceptors bearing microvilli and cilia.
Oliver Vöcking, Ioannis Kourtesis, Sharat Chandra Tumu, Harald Hausen. Elife 2017
23
43

Unconventional Roles of Opsins.
Nicole Y Leung, Craig Montell. Annu Rev Cell Dev Biol 2017
50
20

Unique system of photoreceptors in sea urchin tube feet.
Esther M Ullrich-Lüter, Sam Dupont, Enrique Arboleda, Harald Hausen, Maria Ina Arnone. Proc Natl Acad Sci U S A 2011
59
15

Understanding the dermal light sense in the context of integrative photoreceptor cell biology.
M Desmond Ramirez, Daniel I Speiser, M Sabrina Pankey, Todd H Oakley. Vis Neurosci 2011
31
29


Crystal structure of rhodopsin: A G protein-coupled receptor.
K Palczewski, T Kumasaka, T Hori, C A Behnke, H Motoshima, B A Fox, I Le Trong, D C Teller, T Okada, R E Stenkamp,[...]. Science 2000
9

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating.
Nicolas Lartillot, Thomas Lepage, Samuel Blanquart. Bioinformatics 2009
833
9

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Daniel I Speiser, M Sabrina Pankey, Alexander K Zaharoff, Barbara A Battelle, Heather D Bracken-Grissom, Jesse W Breinholt, Seth M Bybee, Thomas W Cronin, Anders Garm, Annie R Lindgren,[...]. BMC Bioinformatics 2014
42
21

Drosophila auditory organ genes and genetic hearing defects.
Pingkalai R Senthilan, David Piepenbrock, Guvanch Ovezmyradov, Björn Nadrowski, Susanne Bechstedt, Stephanie Pauls, Margret Winkler, Wiebke Möbius, Jonathon Howard, Martin C Göpfert. Cell 2012
114
9

Extraordinary diversity of visual opsin genes in dragonflies.
Ryo Futahashi, Ryouka Kawahara-Miki, Michiyo Kinoshita, Kazutoshi Yoshitake, Shunsuke Yajima, Kentaro Arikawa, Takema Fukatsu. Proc Natl Acad Sci U S A 2015
86
10

The 'division of labour' model of eye evolution.
Detlev Arendt, Harald Hausen, Günter Purschke. Philos Trans R Soc Lond B Biol Sci 2009
52
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.