A citation-based method for searching scientific literature

Ye Xu, Marina K Ayrapetov, Chang Xu, Ozge Gursoy-Yuzugullu, Yiduo Hu, Brendan D Price. Mol Cell 2012
Times Cited: 208







List of co-cited articles
1648 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Histone chaperone Anp32e removes H2A.Z from DNA double-strand breaks and promotes nucleosome reorganization and DNA repair.
Ozge Gursoy-Yuzugullu, Marina K Ayrapetov, Brendan D Price. Proc Natl Acad Sci U S A 2015
75
45

DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139.
E P Rogakou, D R Pilch, A H Orr, V S Ivanova, W M Bonner. J Biol Chem 1998
27

Removal of H2A.Z by INO80 promotes homologous recombination.
Hanan E Alatwi, Jessica A Downs. EMBO Rep 2015
81
32

53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark.
Amélie Fradet-Turcotte, Marella D Canny, Cristina Escribano-Díaz, Alexandre Orthwein, Charles C Y Leung, Hao Huang, Marie-Claude Landry, Julianne Kitevski-LeBlanc, Sylvie M Noordermeer, Frank Sicheri,[...]. Nature 2013
444
23

ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex.
Gaku Mizuguchi, Xuetong Shen, Joe Landry, Wei-Hua Wu, Subhojit Sen, Carl Wu. Science 2004
919
21


Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
21


PARP1 Links CHD2-Mediated Chromatin Expansion and H3.3 Deposition to DNA Repair by Non-homologous End-Joining.
Martijn S Luijsterburg, Inge de Krijger, Wouter W Wiegant, Rashmi G Shah, Godelieve Smeenk, Anton J L de Groot, Alex Pines, Alfred C O Vertegaal, Jacqueline J L Jacobs, Girish M Shah,[...]. Mol Cell 2016
156
20

Histone variant H2A.Z is required for early mammalian development.
R Faast, V Thonglairoam, T C Schulz, J Beall, J R Wells, H Taylor, K Matthaei, P D Rathjen, D J Tremethick, I Lyons. Curr Biol 2001
269
19

Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage.
Tina Thorslund, Anita Ripplinger, Saskia Hoffmann, Thomas Wild, Michael Uckelmann, Bine Villumsen, Takeo Narita, Titia K Sixma, Chunaram Choudhary, Simon Bekker-Jensen,[...]. Nature 2015
235
18

A macrohistone variant links dynamic chromatin compaction to BRCA1-dependent genome maintenance.
Simran Khurana, Michael J Kruhlak, Jeongkyu Kim, Andy D Tran, Jinping Liu, Katherine Nyswaner, Lei Shi, Parthav Jailwala, Myong-Hee Sung, Ofir Hakim,[...]. Cell Rep 2014
143
18

RNF168 ubiquitinates K13-15 on H2A/H2AX to drive DNA damage signaling.
Francesca Mattiroli, Joseph H A Vissers, Willem J van Dijk, Pauline Ikpa, Elisabetta Citterio, Wim Vermeulen, Jurgen A Marteijn, Titia K Sixma. Cell 2012
409
18

Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination.
Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, Erica M Manion, Niraj M Shanbhag, Maria Victoria Botuyan, Georges Mer, Roger A Greenberg. Nat Struct Mol Biol 2013
337
18

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
376
18

The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
18

Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.
Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Anna Biernacka, Magdalena Skrzypczak, François Aymard, Bernard Fongang, Norbert Dojer,[...]. Mol Cell 2018
120
17

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
16

Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer.
Fátima Valdés-Mora, Jenny Z Song, Aaron L Statham, Dario Strbenac, Mark D Robinson, Shalima S Nair, Kate I Patterson, David J Tremethick, Clare Stirzaker, Susan J Clark. Genome Res 2012
124
16

Nucleosome stability mediated by histone variants H3.3 and H2A.Z.
Chunyuan Jin, Gary Felsenfeld. Genes Dev 2007
372
16

Chromatin remodeling at DNA double-strand breaks.
Brendan D Price, Alan D D'Andrea. Cell 2013
361
16

Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions.
Thomas Kusch, Laurence Florens, W Hayes Macdonald, Selene K Swanson, Robert L Glaser, John R Yates, Susan M Abmayr, Michael P Washburn, Jerry L Workman. Science 2004
511
15

RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins.
Carsten Doil, Niels Mailand, Simon Bekker-Jensen, Patrice Menard, Dorthe Helena Larsen, Rainer Pepperkok, Jan Ellenberg, Stephanie Panier, Daniel Durocher, Jiri Bartek,[...]. Cell 2009
659
15

High-resolution profiling of histone methylations in the human genome.
Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao. Cell 2007
15

Histone acetylation by Trrap-Tip60 modulates loading of repair proteins and repair of DNA double-strand breaks.
Rabih Murr, Joanna I Loizou, Yun-Gui Yang, Cyrille Cuenin, Hai Li, Zhao-Qi Wang, Zdenko Herceg. Nat Cell Biol 2006
444
15

High-resolution profiling of gammaH2AX around DNA double strand breaks in the mammalian genome.
Jason S Iacovoni, Pierre Caron, Imen Lassadi, Estelle Nicolas, Laurent Massip, Didier Trouche, Gaëlle Legube. EMBO J 2010
329
15

The TIP60 Complex Regulates Bivalent Chromatin Recognition by 53BP1 through Direct H4K20me Binding and H2AK15 Acetylation.
Karine Jacquet, Amélie Fradet-Turcotte, Nikita Avvakumov, Jean-Philippe Lambert, Céline Roques, Raj K Pandita, Eric Paquet, Pauline Herst, Anne-Claude Gingras, Tej K Pandita,[...]. Mol Cell 2016
138
15

H2A.Z facilitates access of active and repressive complexes to chromatin in embryonic stem cell self-renewal and differentiation.
Gangqing Hu, Kairong Cui, Daniel Northrup, Chengyu Liu, Chaochen Wang, Qingsong Tang, Kai Ge, David Levens, Colyn Crane-Robinson, Keji Zhao. Cell Stem Cell 2013
207
14

ANP32E is a histone chaperone that removes H2A.Z from chromatin.
Arnaud Obri, Khalid Ouararhni, Christophe Papin, Marie-Laure Diebold, Kiran Padmanabhan, Martin Marek, Isabelle Stoll, Ludovic Roy, Patrick T Reilly, Tak W Mak,[...]. Nature 2014
156
14

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
496
14

p21 transcription is regulated by differential localization of histone H2A.Z.
Nicolas Gévry, Ho Man Chan, Liette Laflamme, David M Livingston, Luc Gaudreau. Genes Dev 2007
194
14

Crystal structure of a nucleosome core particle containing the variant histone H2A.Z.
R K Suto, M J Clarkson, D J Tremethick, K Luger. Nat Struct Biol 2000
395
14

Nucleosome dynamics regulates DNA processing.
Nicholas L Adkins, Hengyao Niu, Patrick Sung, Craig L Peterson. Nat Struct Mol Biol 2013
94
14

Histone demethylase KDM5A regulates the ZMYND8-NuRD chromatin remodeler to promote DNA repair.
Fade Gong, Thomas Clouaire, Marion Aguirrebengoa, Gaëlle Legube, Kyle M Miller. J Cell Biol 2017
89
15

DNA double-strand breaks promote methylation of histone H3 on lysine 9 and transient formation of repressive chromatin.
Marina K Ayrapetov, Ozge Gursoy-Yuzugullu, Chang Xu, Ye Xu, Brendan D Price. Proc Natl Acad Sci U S A 2014
220
14

Reorganization of damaged chromatin by the exchange of histone variant H2A.Z-2.
Ikuno Nishibuchi, Hidekazu Suzuki, Aiko Kinomura, Jiying Sun, Ning-Ang Liu, Yasunori Horikoshi, Hiroki Shima, Masayuki Kusakabe, Masahiko Harata, Tatsuo Fukagawa,[...]. Int J Radiat Oncol Biol Phys 2014
31
41

The histone variant macroH2A1.1 is recruited to DSBs through a mechanism involving PARP1.
Chang Xu, Ye Xu, Ozge Gursoy-Yuzugullu, Brendan D Price. FEBS Lett 2012
53
24


The structural basis of modified nucleosome recognition by 53BP1.
Marcus D Wilson, Samir Benlekbir, Amélie Fradet-Turcotte, Alana Sherker, Jean-Philippe Julien, Andrea McEwan, Sylvie M Noordermeer, Frank Sicheri, John L Rubinstein, Daniel Durocher. Nature 2016
144
13

53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks.
Samuel F Bunting, Elsa Callén, Nancy Wong, Hua-Tang Chen, Federica Polato, Amanda Gunn, Anne Bothmer, Niklas Feldhahn, Oscar Fernandez-Capetillo, Liu Cao,[...]. Cell 2010
13

Chromatin and nucleosome dynamics in DNA damage and repair.
Michael H Hauer, Susan M Gasser. Genes Dev 2017
155
13

Human HDAC1 and HDAC2 function in the DNA-damage response to promote DNA nonhomologous end-joining.
Kyle M Miller, Jorrit V Tjeertes, Julia Coates, Gaëlle Legube, Sophie E Polo, Sébastien Britton, Stephen P Jackson. Nat Struct Mol Biol 2010
437
13

Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaks.
Lilach Moyal, Yaniv Lerenthal, Mali Gana-Weisz, Gilad Mass, Sairei So, Shih-Ya Wang, Berina Eppink, Young Min Chung, Gil Shalev, Efrat Shema,[...]. Mol Cell 2011
270
13

The yeast Fun30 and human SMARCAD1 chromatin remodellers promote DNA end resection.
Thomas Costelloe, Raphaël Louge, Nozomi Tomimatsu, Bipasha Mukherjee, Emmanuelle Martini, Basheer Khadaroo, Kenny Dubois, Wouter W Wiegant, Agnès Thierry, Sandeep Burma,[...]. Nature 2012
188
13

Monoubiquitylation of H2A.Z distinguishes its association with euchromatin or facultative heterochromatin.
Elizabeth Sarcinella, Philip C Zuzarte, Priscilla N I Lau, Ryan Draker, Peter Cheung. Mol Cell Biol 2007
132
12

A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation.
Gyula Timinszky, Susanne Till, Paul O Hassa, Michael Hothorn, Georg Kustatscher, Bianca Nijmeijer, Julien Colombelli, Matthias Altmeyer, Ernst H K Stelzer, Klaus Scheffzek,[...]. Nat Struct Mol Biol 2009
329
12

Histone H3 methylation links DNA damage detection to activation of the tumour suppressor Tip60.
Yingli Sun, Xiaofeng Jiang, Ye Xu, Marina K Ayrapetov, Lisa A Moreau, Johnathan R Whetstine, Brendan D Price. Nat Cell Biol 2009
310
12

Regulation of homologous recombination by RNF20-dependent H2B ubiquitination.
Kyosuke Nakamura, Akihiro Kato, Junya Kobayashi, Hiromi Yanagihara, Shuichi Sakamoto, Douglas V N P Oliveira, Mikio Shimada, Hiroshi Tauchi, Hidekazu Suzuki, Satoshi Tashiro,[...]. Mol Cell 2011
244
12

Megabase chromatin domains involved in DNA double-strand breaks in vivo.
E P Rogakou, C Boon, C Redon, W M Bonner. J Cell Biol 1999
12

Human BRCA1-BARD1 ubiquitin ligase activity counteracts chromatin barriers to DNA resection.
Ruth M Densham, Alexander J Garvin, Helen R Stone, Joanna Strachan, Robert A Baldock, Manuel Daza-Martin, Alice Fletcher, Sarah Blair-Reid, James Beesley, Balraj Johal,[...]. Nat Struct Mol Biol 2016
154
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.