A citation-based method for searching scientific literature

Ian J Holt, Aurelio Reyes. Cold Spring Harb Perspect Biol 2012
Times Cited: 94







List of co-cited articles
1111 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mitochondrial DNA replication proceeds via a 'bootlace' mechanism involving the incorporation of processed transcripts.
Aurelio Reyes, Lawrence Kazak, Stuart R Wood, Takehiro Yasukawa, Howard T Jacobs, Ian J Holt. Nucleic Acids Res 2013
74
36

Replication of vertebrate mitochondrial DNA entails transient ribonucleotide incorporation throughout the lagging strand.
Takehiro Yasukawa, Aurelio Reyes, Tricia J Cluett, Ming-Yao Yang, Mark Bowmaker, Howard T Jacobs, Ian J Holt. EMBO J 2006
158
25

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
22



A bidirectional origin of replication maps to the major noncoding region of human mitochondrial DNA.
Takehiro Yasukawa, Ming-Yao Yang, Howard T Jacobs, Ian J Holt. Mol Cell 2005
125
19

Mammalian mitochondrial DNA replicates bidirectionally from an initiation zone.
Mark Bowmaker, Ming Yao Yang, Takehiro Yasukawa, Aurelio Reyes, Howard T Jacobs, Joel A Huberman, Ian J Holt. J Biol Chem 2003
145
17

In vivo occupancy of mitochondrial single-stranded DNA binding protein supports the strand displacement mode of DNA replication.
Javier Miralles Fusté, Yonghong Shi, Sjoerd Wanrooij, Xuefeng Zhu, Elisabeth Jemt, Örjan Persson, Nasim Sabouri, Claes M Gustafsson, Maria Falkenberg. PLoS Genet 2014
85
18

Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication.
Ming Yao Yang, Mark Bowmaker, Aurelio Reyes, Lodovica Vergani, Paolo Angeli, Enrico Gringeri, Howard T Jacobs, Ian J Holt. Cell 2002
201
15

DNA replication and transcription in mammalian mitochondria.
Maria Falkenberg, Nils-Göran Larsson, Claes M Gustafsson. Annu Rev Biochem 2007
443
14

Mitochondrial RNA polymerase is needed for activation of the origin of light-strand DNA replication.
Javier Miralles Fusté, Sjoerd Wanrooij, Elisabeth Jemt, Caroline E Granycome, Tricia J Cluett, Yonghong Shi, Neli Atanassova, Ian J Holt, Claes M Gustafsson, Maria Falkenberg. Mol Cell 2010
124
14

Mammalian mitochondrial DNA replication intermediates are essentially duplex but contain extensive tracts of RNA/DNA hybrid.
Jaakko L O Pohjoismäki, J Bradley Holmes, Stuart R Wood, Ming-Yao Yang, Takehiro Yasukawa, Aurelio Reyes, Laura J Bailey, Tricia J Cluett, Steffi Goffart, Smaranda Willcox,[...]. J Mol Biol 2010
89
15

Premature ageing in mice expressing defective mitochondrial DNA polymerase.
Aleksandra Trifunovic, Anna Wredenberg, Maria Falkenberg, Johannes N Spelbrink, Anja T Rovio, Carl E Bruder, Mohammad Bohlooly-Y, Sebastian Gidlöf, Anders Oldfors, Rolf Wibom,[...]. Nature 2004
13

Mitochondrial DNA maintenance in vertebrates.
G S Shadel, D A Clayton. Annu Rev Biochem 1997
700
13

In D-loop: 40 years of mitochondrial 7S DNA.
Thomas J Nicholls, Michal Minczuk. Exp Gerontol 2014
120
13

Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism.
Timothy A Brown, Ciro Cecconi, Ariana N Tkachuk, Carlos Bustamante, David A Clayton. Genes Dev 2005
127
13

Human mitochondrial DNA deletions associated with mutations in the gene encoding Twinkle, a phage T7 gene 4-like protein localized in mitochondria.
J N Spelbrink, F Y Li, V Tiranti, K Nikali, Q P Yuan, M Tariq, S Wanrooij, N Garrido, G Comi, L Morandi,[...]. Nat Genet 2001
603
12

Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA.
Christian Kukat, Christian A Wurm, Henrik Spåhr, Maria Falkenberg, Nils-Göran Larsson, Stefan Jakobs. Proc Natl Acad Sci U S A 2011
299
12

Human mitochondrial DNA: roles of inherited and somatic mutations.
Eric A Schon, Salvatore DiMauro, Michio Hirano. Nat Rev Genet 2012
420
12

Minimizing the damage: repair pathways keep mitochondrial DNA intact.
Lawrence Kazak, Aurelio Reyes, Ian J Holt. Nat Rev Mol Cell Biol 2012
215
12

Reconstitution of a minimal mtDNA replisome in vitro.
Jenny A Korhonen, Xuan Hoi Pham, Mina Pellegrini, Maria Falkenberg. EMBO J 2004
257
11

Conserved sequence box II directs transcription termination and primer formation in mitochondria.
Xuan Hoi Pham, Géraldine Farge, Yonghong Shi, Martina Gaspari, Claes M Gustafsson, Maria Falkenberg. J Biol Chem 2006
91
12

The human mitochondrial replication fork in health and disease.
Sjoerd Wanrooij, Maria Falkenberg. Biochim Biophys Acta 2010
77
14

Human mitochondrial RNA polymerase primes lagging-strand DNA synthesis in vitro.
Sjoerd Wanrooij, Javier Miralles Fusté, Géraldine Farge, Yonghong Shi, Claes M Gustafsson, Maria Falkenberg. Proc Natl Acad Sci U S A 2008
117
11

Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
266
11



Mitochondrial DNA nucleoid structure.
Daniel F Bogenhagen. Biochim Biophys Acta 2012
162
10

Replicating animal mitochondrial DNA.
Emily A McKinney, Marcos T Oliveira. Genet Mol Biol 2013
49
20

TEFM (c17orf42) is necessary for transcription of human mtDNA.
Michal Minczuk, Jiuya He, Anna M Duch, Thijs J Ettema, Aleksander Chlebowski, Karol Dzionek, Leo G J Nijtmans, Martijn A Huynen, Ian J Holt. Nucleic Acids Res 2011
100
10

Loss-of-function mutations in MGME1 impair mtDNA replication and cause multisystemic mitochondrial disease.
Cornelia Kornblum, Thomas J Nicholls, Tobias B Haack, Susanne Schöler, Viktoriya Peeva, Katharina Danhauser, Kerstin Hallmann, Gábor Zsurka, Joanna Rorbach, Arcangela Iuso,[...]. Nat Genet 2013
133
10

Bidirectional replication initiates at sites throughout the mitochondrial genome of birds.
Aurelio Reyes, Ming Yao Yang, Mark Bowmaker, Ian J Holt. J Biol Chem 2005
63
15

Human heart mitochondrial DNA is organized in complex catenated networks containing abundant four-way junctions and replication forks.
Jaakko L O Pohjoismäki, Steffi Goffart, Henna Tyynismaa, Smaranda Willcox, Tomomi Ide, Dongchon Kang, Anu Suomalainen, Pekka J Karhunen, Jack D Griffith, Ian J Holt,[...]. J Biol Chem 2009
83
12

Expression of catalytic mutants of the mtDNA helicase Twinkle and polymerase POLG causes distinct replication stalling phenotypes.
Sjoerd Wanrooij, Steffi Goffart, Jaakko L O Pohjoismäki, Takehiro Yasukawa, Johannes N Spelbrink. Nucleic Acids Res 2007
109
9


Mitochondrial DNA mutations, oxidative stress, and apoptosis in mammalian aging.
G C Kujoth, A Hiona, T D Pugh, S Someya, K Panzer, S E Wohlgemuth, T Hofer, A Y Seo, R Sullivan, W A Jobling,[...]. Science 2005
9


Mitochondria and cancer.
Douglas C Wallace. Nat Rev Cancer 2012
9

Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice.
Susana M Cerritelli, Ella G Frolova, Chiguang Feng, Alexander Grinberg, Paul E Love, Robert J Crouch. Mol Cell 2003
223
9

The maintenance of mitochondrial DNA integrity--critical analysis and update.
Mikhail Alexeyev, Inna Shokolenko, Glenn Wilson, Susan LeDoux. Cold Spring Harb Perspect Biol 2013
245
9

Primer retention owing to the absence of RNase H1 is catastrophic for mitochondrial DNA replication.
J Bradley Holmes, Gokhan Akman, Stuart R Wood, Kiran Sakhuja, Susana M Cerritelli, Chloe Moss, Mark R Bowmaker, Howard T Jacobs, Robert J Crouch, Ian J Holt. Proc Natl Acad Sci U S A 2015
52
17


Twinkle helicase is essential for mtDNA maintenance and regulates mtDNA copy number.
Henna Tyynismaa, Hiroshi Sembongi, Monika Bokori-Brown, Caroline Granycome, Neil Ashley, Joanna Poulton, Anu Jalanko, Johannes N Spelbrink, Ian J Holt, Anu Suomalainen. Hum Mol Genet 2004
162
8

A novel closed-circular mitochondrial DNA with properties of a replicating intermediate.
H Kasamatsu, D L Robberson, J Vinograd. Proc Natl Acad Sci U S A 1971
272
8

Mitochondrial DNA mutations in human cancer.
A Chatterjee, E Mambo, D Sidransky. Oncogene 2006
405
8


Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer.
Young Seok Ju, Ludmil B Alexandrov, Moritz Gerstung, Inigo Martincorena, Serena Nik-Zainal, Manasa Ramakrishna, Helen R Davies, Elli Papaemmanuil, Gunes Gundem, Adam Shlien,[...]. Elife 2014
211
8

The control region of mitochondrial DNA shows an unusual CpG and non-CpG methylation pattern.
Dina Bellizzi, Patrizia D'Aquila, Teresa Scafone, Marco Giordano, Vincenzo Riso, Andrea Riccio, Giuseppe Passarino. DNA Res 2013
155
8

PrimPol, an archaic primase/polymerase operating in human cells.
Sara García-Gómez, Aurelio Reyes, María I Martínez-Jiménez, E Sandra Chocrón, Silvana Mourón, Gloria Terrados, Christopher Powell, Eduardo Salido, Juan Méndez, Ian J Holt,[...]. Mol Cell 2013
221
8

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins.
Sarah E Calvo, Karl R Clauser, Vamsi K Mootha. Nucleic Acids Res 2016
752
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.