A citation-based method for searching scientific literature

W Denk, J H Strickler, W W Webb. Science 1990
Times Cited: 4276







List of co-cited articles
541 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
23

Nonlinear magic: multiphoton microscopy in the biosciences.
Warren R Zipfel, Rebecca M Williams, Watt W Webb. Nat Biotechnol 2003
13

In vivo three-photon microscopy of subcortical structures within an intact mouse brain.
Nicholas G Horton, Ke Wang, Demirhan Kobat, Catharine G Clark, Frank W Wise, Chris B Schaffer, Chris Xu. Nat Photonics 2013
482
11

In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.
Dimitre G Ouzounov, Tianyu Wang, Mengran Wang, Danielle D Feng, Nicholas G Horton, Jean C Cruz-Hernández, Yu-Ting Cheng, Jacob Reimer, Andreas S Tolias, Nozomi Nishimura,[...]. Nat Methods 2017
171
10

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
10

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
9


Two-photon absorption and the design of two-photon dyes.
Miłosz Pawlicki, Hazel A Collins, Robert G Denning, Harry L Anderson. Angew Chem Int Ed Engl 2009
720
8

Optical sectioning deep inside live embryos by selective plane illumination microscopy.
Jan Huisken, Jim Swoger, Filippo Del Bene, Joachim Wittbrodt, Ernst H K Stelzer. Science 2004
8

Video-rate volumetric functional imaging of the brain at synaptic resolution.
Rongwen Lu, Wenzhi Sun, Yajie Liang, Aaron Kerlin, Jens Bierfeld, Johannes D Seelig, Daniel E Wilson, Benjamin Scholl, Boaz Mohar, Masashi Tanimoto,[...]. Nat Neurosci 2017
89
7

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
663
7

Clarifying Tissue Clearing.
Douglas S Richardson, Jeff W Lichtman. Cell 2015
513
7

Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
7

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
178
6

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
203
6

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
298
6

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi,[...]. Cell 2014
609
6

Imaging intracellular fluorescent proteins at nanometer resolution.
Eric Betzig, George H Patterson, Rachid Sougrat, O Wolf Lindwasser, Scott Olenych, Juan S Bonifacino, Michael W Davidson, Jennifer Lippincott-Schwartz, Harald F Hess. Science 2006
6

Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).
Michael J Rust, Mark Bates, Xiaowei Zhuang. Nat Methods 2006
6

Design of organic molecules with large two-photon absorption cross sections.
M Albota, D Beljonne, J L Brédas, J E Ehrlich, J Y Fu, A A Heikal, S E Hess, T Kogej, M D Levin, S R Marder,[...]. Science 1998
734
6

Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms.
Matthew B Bouchard, Venkatakaushik Voleti, César S Mendes, Clay Lacefield, Wesley B Grueber, Richard S Mann, Randy M Bruno, Elizabeth M C Hillman. Nat Photonics 2015
204
5


Volumetric two-photon imaging of neurons using stereoscopy (vTwINS).
Alexander Song, Adam S Charles, Sue Ann Koay, Jeff L Gauthier, Stephan Y Thiberge, Jonathan W Pillow, David W Tank. Nat Methods 2017
45
11

Serial two-photon tomography for automated ex vivo mouse brain imaging.
Timothy Ragan, Lolahon R Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H Sebastian Seung, Pavel Osten. Nat Methods 2012
301
5

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.
Raju Tomer, Khaled Khairy, Fernando Amat, Philipp J Keller. Nat Methods 2012
272
5

A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing.
Tatsuya C Murakami, Tomoyuki Mano, Shu Saikawa, Shuhei A Horiguchi, Daichi Shigeta, Kousuke Baba, Hiroshi Sekiya, Yoshihiro Shimizu, Kenji F Tanaka, Hiroshi Kiyonari,[...]. Nat Neurosci 2018
95
5

Light-Sheet Microscopy in Neuroscience.
Elizabeth M C Hillman, Venkatakaushik Voleti, Wenze Li, Hang Yu. Annu Rev Neurosci 2019
25
20

Three-dimensional imaging of solvent-cleared organs using 3DISCO.
Ali Ertürk, Klaus Becker, Nina Jährling, Christoph P Mauch, Caroline D Hojer, Jackson G Egen, Farida Hellal, Frank Bradke, Morgan Sheng, Hans-Ulrich Dodt. Nat Protoc 2012
491
5

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
601
5

A clearer vision for in vivo imaging.
R Weissleder. Nat Biotechnol 2001
5

Live tissue intrinsic emission microscopy using multiphoton-excited native fluorescence and second harmonic generation.
Warren R Zipfel, Rebecca M Williams, Richard Christie, Alexander Yu Nikitin, Bradley T Hyman, Watt W Webb. Proc Natl Acad Sci U S A 2003
974
5

Second harmonic generation microscopy for quantitative analysis of collagen fibrillar structure.
Xiyi Chen, Oleg Nadiarynkh, Sergey Plotnikov, Paul J Campagnola. Nat Protoc 2012
398
5


Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity.
Gaddum Duemani Reddy, Keith Kelleher, Rudy Fink, Peter Saggau. Nat Neurosci 2008
186
5

Two-photon absorption properties of fluorescent proteins.
Mikhail Drobizhev, Nikolay S Makarov, Shane E Tillo, Thomas E Hughes, Aleksander Rebane. Nat Methods 2011
305
5

Three-photon imaging of mouse brain structure and function through the intact skull.
Tianyu Wang, Dimitre G Ouzounov, Chunyan Wu, Nicholas G Horton, Bin Zhang, Cheng-Hsun Wu, Yanping Zhang, Mark J Schnitzer, Chris Xu. Nat Methods 2018
76
6

Two-photon excitation fluorescence microscopy.
P T So, C Y Dong, B R Masters, K M Berland. Annu Rev Biomed Eng 2000
462
5

Optical coherence tomography.
D Huang, E A Swanson, C P Lin, J S Schuman, W G Stinson, W Chang, M R Hee, T Flotte, K Gregory, C A Puliafito. Science 1991
5

Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.
Philipp J Keller, Annette D Schmidt, Joachim Wittbrodt, Ernst H K Stelzer. Science 2008
788
5

Fast volumetric calcium imaging across multiple cortical layers using sculpted light.
Robert Prevedel, Aart J Verhoef, Alejandro J Pernía-Andrade, Siegfried Weisenburger, Ben S Huang, Tobias Nöbauer, Alma Fernández, Jeroen E Delcour, Peyman Golshani, Andrius Baltuska,[...]. Nat Methods 2016
63
6

Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window.
Anthony Holtmaat, Tobias Bonhoeffer, David K Chow, Jyoti Chuckowree, Vincenzo De Paola, Sonja B Hofer, Mark Hübener, Tara Keck, Graham Knott, Wei-Chung A Lee,[...]. Nat Protoc 2009
530
4


Simultaneous Multi-plane Imaging of Neural Circuits.
Weijian Yang, Jae-Eun Kang Miller, Luis Carrillo-Reid, Eftychios Pnevmatikakis, Liam Paninski, Rafael Yuste, Darcy S Peterka. Neuron 2016
101
4

Mapping brain circuitry with a light microscope.
Pavel Osten, Troy W Margrie. Nat Methods 2013
129
4

High-resolution 3D imaging of fixed and cleared organoids.
Johanna F Dekkers, Maria Alieva, Lianne M Wellens, Hendrikus C R Ariese, Paul R Jamieson, Annelotte M Vonk, Gimano D Amatngalim, Huili Hu, Koen C Oost, Hugo J G Snippert,[...]. Nat Protoc 2019
72
5

ScaleS: an optical clearing palette for biological imaging.
Hiroshi Hama, Hiroyuki Hioki, Kana Namiki, Tetsushi Hoshida, Hiroshi Kurokawa, Fumiyoshi Ishidate, Takeshi Kaneko, Takumi Akagi, Takashi Saito, Takaomi Saido,[...]. Nat Neurosci 2015
279
4

Advanced CUBIC tissue clearing for whole-organ cell profiling.
Katsuhiko Matsumoto, Tomoki T Mitani, Shuhei A Horiguchi, Junichi Kaneshiro, Tatsuya C Murakami, Tomoyuki Mano, Hiroshi Fujishima, Ayumu Konno, Tomonobu M Watanabe, Hirokazu Hirai,[...]. Nat Protoc 2019
26
15

Optical sectioning microscopy.
José-Angel Conchello, Jeff W Lichtman. Nat Methods 2005
336
4

ClearT: a detergent- and solvent-free clearing method for neuronal and non-neuronal tissue.
Takaaki Kuwajima, Austen A Sitko, Punita Bhansali, Chris Jurgens, William Guido, Carol Mason. Development 2013
269
4



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.