A citation-based method for searching scientific literature

Caroline Robberecht, Thierry Voet, Masoud Zamani Esteki, Beata A Nowakowska, Joris R Vermeesch. Genome Res 2013
Times Cited: 56







List of co-cited articles
523 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
28

Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination.
Michał Startek, Przemyslaw Szafranski, Tomasz Gambin, Ian M Campbell, Patricia Hixson, Chad A Shaw, Paweł Stankiewicz, Anna Gambin. Nucleic Acids Res 2015
47
21

Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination.
Ian M Campbell, Tomasz Gambin, Piotr Dittwald, Christine R Beck, Andrey Shuvarikov, Patricia Hixson, Ankita Patel, Anna Gambin, Chad A Shaw, Jill A Rosenfeld,[...]. BMC Biol 2014
41
21

The Alu-rich genomic architecture of SPAST predisposes to diverse and functionally distinct disease-associated CNV alleles.
Philip M Boone, Bo Yuan, Ian M Campbell, Jennifer C Scull, Marjorie A Withers, Brett C Baggett, Christine R Beck, Christine J Shaw, Pawel Stankiewicz, Paolo Moretti,[...]. Am J Hum Genet 2014
61
14

L1 recombination-associated deletions generate human genomic variation.
Kyudong Han, Jungnam Lee, Thomas J Meyer, Paul Remedios, Lindsey Goodwin, Mark A Batzer. Proc Natl Acad Sci U S A 2008
95
12

Mechanisms of change in gene copy number.
P J Hastings, James R Lupski, Susan M Rosenberg, Grzegorz Ira. Nat Rev Genet 2009
745
12

Dynamic interactions between transposable elements and their hosts.
Henry L Levin, John V Moran. Nat Rev Genet 2011
348
10

Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline.
Wigard P Kloosterman, Victor Guryev, Mark van Roosmalen, Karen J Duran, Ewart de Bruijn, Saskia C M Bakker, Tom Letteboer, Bernadette van Nesselrooij, Ron Hochstenbach, Martin Poot,[...]. Hum Mol Genet 2011
210
10


Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
10


Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
10

The human LINE-1 retrotransposon creates DNA double-strand breaks.
Stephen L Gasior, Timothy P Wakeman, Bo Xu, Prescott L Deininger. J Mol Biol 2006
295
10

Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer.
Y Miki, I Nishisho, A Horii, Y Miyoshi, J Utsunomiya, K W Kinzler, B Vogelstein, Y Nakamura. Cancer Res 1992
408
10

Natural mutagenesis of human genomes by endogenous retrotransposons.
Rebecca C Iskow, Michael T McCabe, Ryan E Mills, Spencer Torene, W Stephen Pittard, Andrew F Neuwald, Erwin G Van Meir, Paula M Vertino, Scott E Devine. Cell 2010
397
10

LINE-mediated retrotransposition of marked Alu sequences.
Marie Dewannieux, Cécile Esnault, Thierry Heidmann. Nat Genet 2003
694
10

Hot L1s account for the bulk of retrotransposition in the human population.
Brook Brouha, Joshua Schustak, Richard M Badge, Sheila Lutz-Prigge, Alexander H Farley, John V Moran, Haig H Kazazian. Proc Natl Acad Sci U S A 2003
670
10


A human genome structural variation sequencing resource reveals insights into mutational mechanisms.
Jeffrey M Kidd, Tina Graves, Tera L Newman, Robert Fulton, Hillary S Hayden, Maika Malig, Joelle Kallicki, Rajinder Kaul, Richard K Wilson, Evan E Eichler. Cell 2010
192
10

Mechanisms underlying structural variant formation in genomic disorders.
Claudia M B Carvalho, James R Lupski. Nat Rev Genet 2016
292
10

Frequent human genomic DNA transduction driven by LINE-1 retrotransposition.
O K Pickeral, W Makałowski, M S Boguski, J D Boeke. Genome Res 2000
184
8

Repetitive elements may comprise over two-thirds of the human genome.
A P Jason de Koning, Wanjun Gu, Todd A Castoe, Mark A Batzer, David D Pollock. PLoS Genet 2011
617
8


Chromosome instability is common in human cleavage-stage embryos.
Evelyne Vanneste, Thierry Voet, Cédric Le Caignec, Michèle Ampe, Peter Konings, Cindy Melotte, Sophie Debrock, Mustapha Amyere, Miikka Vikkula, Frans Schuit,[...]. Nat Med 2009
515
8

Observation and prediction of recurrent human translocations mediated by NAHR between nonhomologous chromosomes.
Zhishuo Ou, Paweł Stankiewicz, Zhilian Xia, Amy M Breman, Brian Dawson, Joanna Wiszniewska, Przemyslaw Szafranski, M Lance Cooper, Mitchell Rao, Lina Shao,[...]. Genome Res 2011
56
8

Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health.
Victoria P Belancio, Dale J Hedges, Prescott Deininger. Genome Res 2008
208
8

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
972
8

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
8

Human genomic deletions mediated by recombination between Alu elements.
Shurjo K Sen, Kyudong Han, Jianxin Wang, Jungnam Lee, Hui Wang, Pauline A Callinan, Matthew Dyer, Richard Cordaux, Ping Liang, Mark A Batzer. Am J Hum Genet 2006
207
8

LINE dancing in the human genome: transposable elements and disease.
Victoria P Belancio, Prescott L Deininger, Astrid M Roy-Engel. Genome Med 2009
88
8

SVA elements are nonautonomous retrotransposons that cause disease in humans.
Eric M Ostertag, John L Goodier, Yue Zhang, Haig H Kazazian. Am J Hum Genet 2003
226
8

Human L1 element target-primed reverse transcription in vitro.
Gregory J Cost, Qinghua Feng, Alain Jacquier, Jef D Boeke. EMBO J 2002
352
8

Population genomics of transposable elements in Drosophila melanogaster.
Dmitri A Petrov, Anna-Sophie Fiston-Lavier, Mikhail Lipatov, Kapa Lenkov, Josefa González. Mol Biol Evol 2011
109
8

Rare pathogenic microdeletions and tandem duplications are microhomology-mediated and stimulated by local genomic architecture.
Lisenka E L M Vissers, Samarth S Bhatt, Irene M Janssen, Zhilian Xia, Seema R Lalani, Rolph Pfundt, Katarzyna Derwinska, Bert B A de Vries, Christian Gilissen, Alexander Hoischen,[...]. Hum Mol Genet 2009
122
8


NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits.
Piotr Dittwald, Tomasz Gambin, Przemyslaw Szafranski, Jian Li, Stephen Amato, Michael Y Divon, Lisa Ximena Rodríguez Rojas, Lindsay E Elton, Daryl A Scott, Christian P Schaaf,[...]. Genome Res 2013
80
8

Next-generation sequencing of duplication CNVs reveals that most are tandem and some create fusion genes at breakpoints.
Scott Newman, Karen E Hermetz, Brooke Weckselblatt, M Katharine Rudd. Am J Hum Genet 2015
85
8

Large inverted duplications in the human genome form via a fold-back mechanism.
Karen E Hermetz, Scott Newman, Karen N Conneely, Christa L Martin, Blake C Ballif, Lisa G Shaffer, Jannine D Cody, M Katharine Rudd. PLoS Genet 2014
34
14

Tandem repeats and G-rich sequences are enriched at human CNV breakpoints.
Promita Bose, Karen E Hermetz, Karen N Conneely, M Katharine Rudd. PLoS One 2014
26
19

Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements.
Pengfei Liu, Ayelet Erez, Sandesh C Sreenath Nagamani, Shweta U Dhar, Katarzyna E Kołodziejska, Avinash V Dharmadhikari, M Lance Cooper, Joanna Wiszniewska, Feng Zhang, Marjorie A Withers,[...]. Cell 2011
291
8


Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration.
Colby Chiang, Jessie C Jacobsen, Carl Ernst, Carrie Hanscom, Adrian Heilbut, Ian Blumenthal, Ryan E Mills, Andrew Kirby, Amelia M Lindgren, Skye R Rudiger,[...]. Nat Genet 2012
170
8

Constitutional chromothripsis rearrangements involve clustered double-stranded DNA breaks and nonhomologous repair mechanisms.
Wigard P Kloosterman, Masoumeh Tavakoli-Yaraki, Markus J van Roosmalen, Ellen van Binsbergen, Ivo Renkens, Karen Duran, Lucia Ballarati, Sarah Vergult, Daniela Giardino, Kerstin Hansson,[...]. Cell Rep 2012
157
8

Unbalanced translocations arise from diverse mutational mechanisms including chromothripsis.
Brooke Weckselblatt, Karen E Hermetz, M Katharine Rudd. Genome Res 2015
42
11

Frequency of nonallelic homologous recombination is correlated with length of homology: evidence that ectopic synapsis precedes ectopic crossing-over.
Pengfei Liu, Melanie Lacaria, Feng Zhang, Marjorie Withers, P J Hastings, James R Lupski. Am J Hum Genet 2011
74
8

Population genomics of transposable elements in Drosophila.
Maite G Barrón, Anna-Sophie Fiston-Lavier, Dmitri A Petrov, Josefa González. Annu Rev Genet 2014
88
8

Organization and evolution of transposable elements along the bread wheat chromosome 3B.
Josquin Daron, Natasha Glover, Lise Pingault, Sébastien Theil, Véronique Jamilloux, Etienne Paux, Valérie Barbe, Sophie Mangenot, Adriana Alberti, Patrick Wincker,[...]. Genome Biol 2014
58
8

An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabilities.
Erin B Kaminsky, Vineith Kaul, Justin Paschall, Deanna M Church, Brian Bunke, Dawn Kunig, Daniel Moreno-De-Luca, Andres Moreno-De-Luca, Jennifer G Mulle, Stephen T Warren,[...]. Genet Med 2011
296
7

A recurrent translocation is mediated by homologous recombination between HERV-H elements.
Karen E Hermetz, Urvashi Surti, Jannine D Cody, M Katharine Rudd. Mol Cytogenet 2012
14
28

Heterozygous submicroscopic inversions involving olfactory receptor-gene clusters mediate the recurrent t(4;8)(p16;p23) translocation.
Sabrina Giglio, Vladimiro Calvari, Giuliana Gregato, Giorgio Gimelli, Silvia Camanini, Roberto Giorda, Angela Ragusa, Silvana Guerneri, Angelo Selicorni, Marcus Stumm,[...]. Am J Hum Genet 2002
152
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.