A citation-based method for searching scientific literature

Jean-Paul Armache, Andreas M Anger, Viter Márquez, Sibylle Franckenberg, Thomas Fröhlich, Elizabeth Villa, Otto Berninghausen, Michael Thomm, Georg J Arnold, Roland Beckmann, Daniel N Wilson. Nucleic Acids Res 2013
Times Cited: 45







List of co-cited articles
507 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
339
44

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
742
35

One core, two shells: bacterial and eukaryotic ribosomes.
Sergey Melnikov, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2012
235
31

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.
Odile Lecompte, Raymond Ripp, Jean-Claude Thierry, Dino Moras, Olivier Poch. Nucleic Acids Res 2002
231
28

History of the ribosome and the origin of translation.
Anton S Petrov, Burak Gulen, Ashlyn M Norris, Nicholas A Kovacs, Chad R Bernier, Kathryn A Lanier, George E Fox, Stephen C Harvey, Roger M Wartell, Nicholas V Hud,[...]. Proc Natl Acad Sci U S A 2015
115
26

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
24

Structures of the human and Drosophila 80S ribosome.
Andreas M Anger, Jean-Paul Armache, Otto Berninghausen, Michael Habeck, Marion Subklewe, Daniel N Wilson, Roland Beckmann. Nature 2013
332
22

Phylogenetic structure of the prokaryotic domain: the primary kingdoms.
C R Woese, G E Fox. Proc Natl Acad Sci U S A 1977
22

Evolution of the ribosome at atomic resolution.
Anton S Petrov, Chad R Bernier, Chiaolong Hsiao, Ashlyn M Norris, Nicholas A Kovacs, Chris C Waterbury, Victor G Stepanov, Stephen C Harvey, George E Fox, Roger M Wartell,[...]. Proc Natl Acad Sci U S A 2014
95
20

RiboVision suite for visualization and analysis of ribosomes.
Chad R Bernier, Anton S Petrov, Chris C Waterbury, James Jett, Fengbo Li, Larry E Freil, Xiao Xiong, Lan Wang, Blacki L R Migliozzi, Eli Hershkovits,[...]. Faraday Discuss 2014
64
20

Revising the Structural Diversity of Ribosomal Proteins Across the Three Domains of Life.
Sergey Melnikov, Kasidet Manakongtreecheep, Dieter Söll. Mol Biol Evol 2018
35
25


Origin and evolution of the ribosome.
George E Fox. Cold Spring Harb Perspect Biol 2010
123
17

Phylogenomics of prokaryotic ribosomal proteins.
Natalya Yutin, Pere Puigbò, Eugene V Koonin, Yuri I Wolf. PLoS One 2012
162
17

Cryo-EM structure of the archaeal 50S ribosomal subunit in complex with initiation factor 6 and implications for ribosome evolution.
Basil J Greber, Daniel Boehringer, Vlatka Godinic-Mikulcic, Ana Crnkovic, Michael Ibba, Ivana Weygand-Durasevic, Nenad Ban. J Mol Biol 2012
26
30

Asgard archaea illuminate the origin of eukaryotic cellular complexity.
Katarzyna Zaremba-Niedzwiedzka, Eva F Caceres, Jimmy H Saw, Disa Bäckström, Lina Juzokaite, Emmelien Vancaester, Kiley W Seitz, Karthik Anantharaman, Piotr Starnawski, Kasper U Kjeldsen,[...]. Nature 2017
436
17

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
15

Structure of the 30S ribosomal subunit.
B T Wimberly, D E Brodersen, W M Clemons, R J Morgan-Warren, A P Carter, C Vonrhein, T Hartsch, V Ramakrishnan. Nature 2000
15

Peeling the onion: ribosomes are ancient molecular fossils.
Chiaolong Hsiao, Srividya Mohan, Benson K Kalahar, Loren Dean Williams. Mol Biol Evol 2009
83
15

Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6.
Sebastian Klinge, Felix Voigts-Hoffmann, Marc Leibundgut, Sofia Arpagaus, Nenad Ban. Science 2011
248
15

Structure of the human 80S ribosome.
Heena Khatter, Alexander G Myasnikov, S Kundhavai Natchiar, Bruno P Klaholz. Nature 2015
247
15

Translation: The Universal Structural Core of Life.
Chad R Bernier, Anton S Petrov, Nicholas A Kovacs, Petar I Penev, Loren Dean Williams. Mol Biol Evol 2018
26
26

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.
Jamie J Cannone, Sankar Subramanian, Murray N Schnare, James R Collett, Lisa M D'Souza, Yushi Du, Brian Feng, Nan Lin, Lakshmi V Madabusi, Kirsten M Müller,[...]. BMC Bioinformatics 2002
13

Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1.
Julius Rabl, Marc Leibundgut, Sandro F Ataide, Andrea Haag, Nenad Ban. Science 2011
339
13

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome.
Yaser Hashem, Amedee des Georges, Jie Fu, Sarah N Buss, Fabrice Jossinet, Amy Jobe, Qin Zhang, Hstau Y Liao, Robert A Grassucci, Chandrajit Bajaj,[...]. Nature 2013
89
13

A hierarchical model for evolution of 23S ribosomal RNA.
Konstantin Bokov, Sergey V Steinberg. Nature 2009
136
13

Complex archaea that bridge the gap between prokaryotes and eukaryotes.
Anja Spang, Jimmy H Saw, Steffen L Jørgensen, Katarzyna Zaremba-Niedzwiedzka, Joran Martijn, Anders E Lind, Roel van Eijk, Christa Schleper, Lionel Guy, Thijs J G Ettema. Nature 2015
535
13

Structure of the E. coli ribosome-EF-Tu complex at <3 Å resolution by Cs-corrected cryo-EM.
Niels Fischer, Piotr Neumann, Andrey L Konevega, Lars V Bock, Ralf Ficner, Marina V Rodnina, Holger Stark. Nature 2015
248
13

Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii.
Zhifei Li, Qiang Guo, Lvqin Zheng, Yongsheng Ji, Yi-Ting Xie, De-Hua Lai, Zhao-Rong Lun, Xun Suo, Ning Gao. Cell Res 2017
13
46

Revisiting the Haloarcula marismortui 50S ribosomal subunit model.
Azat Gabdulkhakov, Stanislav Nikonov, Maria Garber. Acta Crystallogr D Biol Crystallogr 2013
25
24

Root of the Tree: The Significance, Evolution, and Origins of the Ribosome.
Jessica C Bowman, Anton S Petrov, Moran Frenkel-Pinter, Petar I Penev, Loren Dean Williams. Chem Rev 2020
39
15

Supersized Ribosomal RNA Expansion Segments in Asgard Archaea.
Petar I Penev, Sara Fakhretaha-Aval, Vaishnavi J Patel, Jamie J Cannone, Robin R Gutell, Anton S Petrov, Loren Dean Williams, Jennifer B Glass. Genome Biol Evol 2020
11
54

rRNA maturation in yeast cells depleted of large ribosomal subunit proteins.
Gisela Pöll, Tobias Braun, Jelena Jakovljevic, Andreas Neueder, Steffen Jakob, John L Woolford, Herbert Tschochner, Philipp Milkereit. PLoS One 2009
76
11

Analysis of the in vivo assembly pathway of eukaryotic 40S ribosomal proteins.
Sébastien Ferreira-Cerca, Gisela Pöll, Holger Kühn, Andreas Neueder, Steffen Jakob, Herbert Tschochner, Philipp Milkereit. Mol Cell 2007
109
11

Structures of the bacterial ribosome at 3.5 A resolution.
Barbara S Schuwirth, Maria A Borovinskaya, Cathy W Hau, Wen Zhang, Antón Vila-Sanjurjo, James M Holton, Jamie H Doudna Cate. Science 2005
980
11

The origin and evolution of the ribosome.
Temple F Smith, Jung C Lee, Robin R Gutell, Hyman Hartman. Biol Direct 2008
51
11

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.
Jack A Dunkle, Leyi Wang, Michael B Feldman, Arto Pulk, Vincent B Chen, Gary J Kapral, Jonas Noeske, Jane S Richardson, Scott C Blanchard, Jamie H Doudna Cate. Science 2011
258
11

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
447
11

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.
Jesus de la Cruz, Katrin Karbstein, John L Woolford. Annu Rev Biochem 2015
191
11

Structural snapshots of actively translating human ribosomes.
Elmar Behrmann, Justus Loerke, Tatyana V Budkevich, Kaori Yamamoto, Andrea Schmidt, Pawel A Penczek, Matthijn R Vos, Jörg Bürger, Thorsten Mielke, Patrick Scheerer,[...]. Cell 2015
104
11

A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.
Bethany S Strunk, Megan N Novak, Crystal L Young, Katrin Karbstein. Cell 2012
178
11

Structure of the 70S ribosome complexed with mRNA and tRNA.
Maria Selmer, Christine M Dunham, Frank V Murphy, Albert Weixlbaumer, Sabine Petry, Ann C Kelley, John R Weir, V Ramakrishnan. Science 2006
949
11

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
11

Ribosomal protein-sequence block structure suggests complex prokaryotic evolution with implications for the origin of eukaryotes.
Prashanth Vishwanath, Paola Favaretto, Hyman Hartman, Scott C Mohr, Temple F Smith. Mol Phylogenet Evol 2004
35
14


Assembly of bacterial ribosomes.
Zahra Shajani, Michael T Sykes, James R Williamson. Annu Rev Biochem 2011
294
11

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
11

The evolution of the ribosome biogenesis pathway from a yeast perspective.
Ingo Ebersberger, Stefan Simm, Matthias S Leisegang, Peter Schmitzberger, Oliver Mirus, Arndt von Haeseler, Markus T Bohnsack, Enrico Schleiff. Nucleic Acids Res 2014
59
11

Ribosome. The structure of the human mitochondrial ribosome.
Alexey Amunts, Alan Brown, Jaan Toots, Sjors H W Scheres, V Ramakrishnan. Science 2015
289
11

The Complete Structure of the Mycobacterium smegmatis 70S Ribosome.
Jendrik Hentschel, Chloe Burnside, Ingrid Mignot, Marc Leibundgut, Daniel Boehringer, Nenad Ban. Cell Rep 2017
44
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.