A citation-based method for searching scientific literature

Phil G T Sanders, James Cotterell, James Sharpe, Mark Isalan. RNA Biol 2013
Times Cited: 3







List of co-cited articles
3 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
66

RNA G-quadruplexes and their potential regulatory roles in translation.
Jingwen Song, Jean-Pierre Perreault, Ivan Topisirovic, Stéphane Richard. Translation (Austin) 2016
85
66

Regulation of viral and cellular gene expression by Kaposi's sarcoma-associated herpesvirus polyadenylated nuclear RNA.
Cyprian C Rossetto, Margaret Tarrant-Elorza, Subhash Verma, Pravinkumar Purushothaman, Gregory S Pari. J Virol 2013
93
33


A G-quadruplex-interactive potent small-molecule inhibitor of telomerase exhibiting in vitro and in vivo antitumor activity.
Sharon M Gowan, John R Harrison, Lisa Patterson, Melanie Valenti, Martin A Read, Stephen Neidle, Lloyd R Kelland. Mol Pharmacol 2002
224
33



G-quadruplexes regulate Epstein-Barr virus-encoded nuclear antigen 1 mRNA translation.
Pierre Murat, Jie Zhong, Lea Lekieffre, Nathan P Cowieson, Jennifer L Clancy, Thomas Preiss, Shankar Balasubramanian, Rajiv Khanna, Judy Tellam. Nat Chem Biol 2014
167
33

The complete DNA sequence of varicella-zoster virus.
A J Davison, J E Scott. J Gen Virol 1986
33

Formation of a unique cluster of G-quadruplex structures in the HIV-1 Nef coding region: implications for antiviral activity.
Rosalba Perrone, Matteo Nadai, Jerrod A Poe, Ilaria Frasson, Manlio Palumbo, Giorgio Palù, Thomas E Smithgall, Sara N Richter. PLoS One 2013
79
33

A dynamic G-quadruplex region regulates the HIV-1 long terminal repeat promoter.
Rosalba Perrone, Matteo Nadai, Ilaria Frasson, Jerrod A Poe, Elena Butovskaya, Thomas E Smithgall, Manlio Palumbo, Giorgio Palù, Sara N Richter. J Med Chem 2013
119
33

A G-rich element forms a G-quadruplex and regulates BACE1 mRNA alternative splicing.
Jean-François Fisette, Daniel R Montagna, Mihaela-Rita Mihailescu, Michael S Wolfe. J Neurochem 2012
66
33



Structure and stability of human telomeric sequence.
P Balagurumoorthy, S K Brahmachari. J Biol Chem 1994
301
33

Functional profiling of a human cytomegalovirus genome.
Walter Dunn, Cassie Chou, Hong Li, Rong Hai, David Patterson, Viktor Stolc, Hua Zhu, Fenyong Liu. Proc Natl Acad Sci U S A 2003
496
33


Identification of human telomeric repeat motifs at the genome termini of human herpesvirus 7: structural analysis and heterogeneity.
P Secchiero, J Nicholas, H Deng, T Xiaopeng, N van Loon, V R Ruvolo, Z N Berneman, M S Reitz, S Dewhurst. J Virol 1995
30
33


Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution.
Attila Ambrus, Ding Chen, Jixun Dai, Tiffanie Bialis, Roger A Jones, Danzhou Yang. Nucleic Acids Res 2006
815
33

DNA microarrays of the complex human cytomegalovirus genome: profiling kinetic class with drug sensitivity of viral gene expression.
J Chambers, A Angulo, D Amaratunga, H Guo, Y Jiang, J S Wan, A Bittner, K Frueh, M R Jackson, P A Peterson,[...]. J Virol 1999
214
33

5'-UTR RNA G-quadruplexes: translation regulation and targeting.
Anthony Bugaut, Shankar Balasubramanian. Nucleic Acids Res 2012
424
33


Genome wide nucleosome mapping for HSV-1 shows nucleosomes are deposited at preferred positions during lytic infection.
Jaewook Oh, Iryna F Sanders, Eric Z Chen, Hongzhe Li, John W Tobias, R Benjamin Isett, Sindura Penubarthi, Hao Sun, Don A Baldwin, Nigel W Fraser. PLoS One 2015
14
33


ViPR: an open bioinformatics database and analysis resource for virology research.
Brett E Pickett, Eva L Sadat, Yun Zhang, Jyothi M Noronha, R Burke Squires, Victoria Hunt, Mengya Liu, Sanjeev Kumar, Sam Zaremba, Zhiping Gu,[...]. Nucleic Acids Res 2012
421
33

A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target.
Shao-Ru Wang, Yuan-Qin Min, Jia-Qi Wang, Chao-Xing Liu, Bo-Shi Fu, Fan Wu, Ling-Yu Wu, Zhi-Xian Qiao, Yan-Yan Song, Guo-Hua Xu,[...]. Sci Adv 2016
83
33


Anti-HIV-1 activity of the G-quadruplex ligand BRACO-19.
Rosalba Perrone, Elena Butovskaya, Dirk Daelemans, Giorgio Palù, Christophe Pannecouque, Sara N Richter. J Antimicrob Chemother 2014
81
33

The Herpes Simplex Virus-1 genome contains multiple clusters of repeated G-quadruplex: Implications for the antiviral activity of a G-quadruplex ligand.
Sara Artusi, Matteo Nadai, Rosalba Perrone, Maria Angela Biasolo, Giorgio Palù, Louis Flamand, Arianna Calistri, Sara N Richter. Antiviral Res 2015
91
33

KSHV 2.0: a comprehensive annotation of the Kaposi's sarcoma-associated herpesvirus genome using next-generation sequencing reveals novel genomic and functional features.
Carolina Arias, Ben Weisburd, Noam Stern-Ginossar, Alexandre Mercier, Alexis S Madrid, Priya Bellare, Meghan Holdorf, Jonathan S Weissman, Don Ganem. PLoS Pathog 2014
191
33

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.
Pooja Rawal, Veera Bhadra Rao Kummarasetti, Jinoy Ravindran, Nirmal Kumar, Kangkan Halder, Rakesh Sharma, Mitali Mukerji, Swapan Kumar Das, Shantanu Chowdhury. Genome Res 2006
237
33

FeatureExtract--extraction of sequence annotation made easy.
Rasmus Wernersson. Nucleic Acids Res 2005
37
33

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
879
33



Human papillomavirus G-quadruplexes.
Katarína Tlučková, Maja Marušič, Petra Tóthová, Lubos Bauer, Primož Šket, Janez Plavec, Viktor Viglasky. Biochemistry 2013
69
33

Genome-wide analyses of recombination prone regions predict role of DNA structural motif in recombination.
Prithvi Mani, Vinod Kumar Yadav, Swapan Kumar Das, Shantanu Chowdhury. PLoS One 2009
61
33

Gene UL2 of herpes simplex virus type 1 encodes a uracil-DNA glycosylase.
J Mullaney, H W Moss, D J McGeoch. J Gen Virol 1989
78
33


Dual roles for the telomeric repeats in chromosomally integrated human herpesvirus-6.
Tamae Ohye, Hidehito Inagaki, Masaru Ihira, Yuki Higashimoto, Koji Kato, Junko Oikawa, Hiroshi Yagasaki, Takahiro Niizuma, Yoshiyuki Takahashi, Seiji Kojima,[...]. Sci Rep 2014
23
33

A G-quadruplex structure within the 5'-UTR of TRF2 mRNA represses translation in human cells.
Dennis Gomez, Aurore Guédin, Jean-Louis Mergny, Bernard Salles, Jean-François Riou, Marie-Paule Teulade-Fichou, Patrick Calsou. Nucleic Acids Res 2010
134
33




Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
33

Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.
Anjali Verma, Kangkan Halder, Rashi Halder, Vinod Kumar Yadav, Pooja Rawal, Ram Krishna Thakur, Farhan Mohd, Abhay Sharma, Shantanu Chowdhury. J Med Chem 2008
156
33

Identification of new herpesvirus gene homologs in the human genome.
Ria Holzerlandt, Christine Orengo, Paul Kellam, M Mar Albà. Genome Res 2002
80
33

Viral enhancer mimicry of host innate-immune promoters.
Kai A Kropp, Ana Angulo, Peter Ghazal. PLoS Pathog 2014
13
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.