A citation-based method for searching scientific literature

Matteo Berti, Arnab Ray Chaudhuri, Saravanabhavan Thangavel, Shivasankari Gomathinayagam, Sasa Kenig, Marko Vujanovic, Federico Odreman, Timo Glatter, Simona Graziano, Ramiro Mendoza-Maldonado, Francesca Marino, Bojana Lucic, Valentina Biasin, Matthias Gstaiger, Ruedi Aebersold, Julia M Sidorova, Raymond J Monnat, Massimo Lopes, Alessandro Vindigni. Nat Struct Mol Biol 2013
Times Cited: 256







List of co-cited articles
1992 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Rad51-mediated replication fork reversal is a global response to genotoxic treatments in human cells.
Ralph Zellweger, Damian Dalcher, Karun Mutreja, Matteo Berti, Jonas A Schmid, Raquel Herrador, Alessandro Vindigni, Massimo Lopes. J Cell Biol 2015
362
45

Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11.
Katharina Schlacher, Nicole Christ, Nicolas Siaud, Akinori Egashira, Hong Wu, Maria Jasin. Cell 2011
743
42

Topoisomerase I poisoning results in PARP-mediated replication fork reversal.
Arnab Ray Chaudhuri, Yoshitami Hashimoto, Raquel Herrador, Kai J Neelsen, Daniele Fachinetti, Rodrigo Bermejo, Andrea Cocito, Vincenzo Costanzo, Massimo Lopes. Nat Struct Mol Biol 2012
306
38

Replication fork reversal triggers fork degradation in BRCA2-defective cells.
Sofija Mijic, Ralph Zellweger, Nagaraja Chappidi, Matteo Berti, Kurt Jacobs, Karun Mutreja, Sebastian Ursich, Arnab Ray Chaudhuri, Andre Nussenzweig, Pavel Janscak,[...]. Nat Commun 2017
166
33

DNA2 drives processing and restart of reversed replication forks in human cells.
Saravanabhavan Thangavel, Matteo Berti, Maryna Levikova, Cosimo Pinto, Shivasankari Gomathinayagam, Marko Vujanovic, Ralph Zellweger, Hayley Moore, Eu Han Lee, Eric A Hendrickson,[...]. J Cell Biol 2015
203
33

Specific killing of BRCA2-deficient tumours with inhibitors of poly(ADP-ribose) polymerase.
Helen E Bryant, Niklas Schultz, Huw D Thomas, Kayan M Parker, Dan Flower, Elena Lopez, Suzanne Kyle, Mark Meuth, Nicola J Curtin, Thomas Helleday. Nature 2005
32


Replication fork stability confers chemoresistance in BRCA-deficient cells.
Arnab Ray Chaudhuri, Elsa Callen, Xia Ding, Ewa Gogola, Alexandra A Duarte, Ji-Eun Lee, Nancy Wong, Vanessa Lafarga, Jennifer A Calvo, Nicholas J Panzarino,[...]. Nature 2016
431
30

Smarcal1-Mediated Fork Reversal Triggers Mre11-Dependent Degradation of Nascent DNA in the Absence of Brca2 and Stable Rad51 Nucleofilaments.
Arun Mouli Kolinjivadi, Vincenzo Sannino, Anna De Antoni, Karina Zadorozhny, Mairi Kilkenny, Hervé Técher, Giorgio Baldi, Rong Shen, Alberto Ciccia, Luca Pellegrini,[...]. Mol Cell 2017
169
30

MRE11 and EXO1 nucleases degrade reversed forks and elicit MUS81-dependent fork rescue in BRCA2-deficient cells.
Delphine Lemaçon, Jessica Jackson, Annabel Quinet, Joshua R Brickner, Shan Li, Stephanie Yazinski, Zhongsheng You, Grzegorz Ira, Lee Zou, Nima Mosammaparast,[...]. Nat Commun 2017
176
30

Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy.
Hannah Farmer, Nuala McCabe, Christopher J Lord, Andrew N J Tutt, Damian A Johnson, Tobias B Richardson, Manuela Santarosa, Krystyna J Dillon, Ian Hickson, Charlotte Knights,[...]. Nature 2005
30

Restoration of Replication Fork Stability in BRCA1- and BRCA2-Deficient Cells by Inactivation of SNF2-Family Fork Remodelers.
Angelo Taglialatela, Silvia Alvarez, Giuseppe Leuzzi, Vincenzo Sannino, Lepakshi Ranjha, Jen-Wei Huang, Chioma Madubata, Roopesh Anand, Brynn Levy, Raul Rabadan,[...]. Mol Cell 2017
165
28

Replication fork reversal in eukaryotes: from dead end to dynamic response.
Kai J Neelsen, Massimo Lopes. Nat Rev Mol Cell Biol 2015
275
27

PARP is activated at stalled forks to mediate Mre11-dependent replication restart and recombination.
Helen E Bryant, Eva Petermann, Niklas Schultz, Ann-Sofie Jemth, Olga Loseva, Natalia Issaeva, Fredrik Johansson, Serena Fernandez, Peter McGlynn, Thomas Helleday. EMBO J 2009
412
25

High speed of fork progression induces DNA replication stress and genomic instability.
Apolinar Maya-Mendoza, Pavel Moudry, Joanna Maria Merchut-Maya, MyungHee Lee, Robert Strauss, Jiri Bartek. Nature 2018
201
24

Causes and consequences of replication stress.
Michelle K Zeman, Karlene A Cimprich. Nat Cell Biol 2014
23

ATR phosphorylates SMARCAL1 to prevent replication fork collapse.
Frank B Couch, Carol E Bansbach, Robert Driscoll, Jessica W Luzwick, Gloria G Glick, Rémy Bétous, Clinton M Carroll, Sung Yun Jung, Jun Qin, Karlene A Cimprich,[...]. Genes Dev 2013
244
22

Hydroxyurea-stalled replication forks become progressively inactivated and require two different RAD51-mediated pathways for restart and repair.
Eva Petermann, Manuel Luís Orta, Natalia Issaeva, Niklas Schultz, Thomas Helleday. Mol Cell 2010
550
22

Replication Fork Slowing and Reversal upon DNA Damage Require PCNA Polyubiquitination and ZRANB3 DNA Translocase Activity.
Marko Vujanovic, Jana Krietsch, Maria Chiara Raso, Nastassja Terraneo, Ralph Zellweger, Jonas A Schmid, Angelo Taglialatela, Jen-Wei Huang, Cory L Holland, Katharina Zwicky,[...]. Mol Cell 2017
117
22

Trapping of PARP1 and PARP2 by Clinical PARP Inhibitors.
Junko Murai, Shar-yin N Huang, Benu Brata Das, Amelie Renaud, Yiping Zhang, James H Doroshow, Jiuping Ji, Shunichi Takeda, Yves Pommier. Cancer Res 2012
22

The Importance of Poly(ADP-Ribose) Polymerase as a Sensor of Unligated Okazaki Fragments during DNA Replication.
Hana Hanzlikova, Ilona Kalasova, Annie A Demin, Lewis E Pennicott, Zuzana Cihlarova, Keith W Caldecott. Mol Cell 2018
129
22

PRIMPOL-Mediated Adaptive Response Suppresses Replication Fork Reversal in BRCA-Deficient Cells.
Annabel Quinet, Stephanie Tirman, Jessica Jackson, Saša Šviković, Delphine Lemaçon, Denisse Carvajal-Maldonado, Daniel González-Acosta, Alexandre T Vessoni, Emily Cybulla, Matthew Wood,[...]. Mol Cell 2020
63
33

SMARCAL1 catalyzes fork regression and Holliday junction migration to maintain genome stability during DNA replication.
Rémy Bétous, Aaron C Mason, Robert P Rambo, Carol E Bansbach, Akosua Badu-Nkansah, Bianca M Sirbu, Brandt F Eichman, David Cortez. Genes Dev 2012
184
19

Rad51 protects nascent DNA from Mre11-dependent degradation and promotes continuous DNA synthesis.
Yoshitami Hashimoto, Arnab Ray Chaudhuri, Massimo Lopes, Vincenzo Costanzo. Nat Struct Mol Biol 2010
334
19

Substrate-selective repair and restart of replication forks by DNA translocases.
Rémy Bétous, Frank B Couch, Aaron C Mason, Brandt F Eichman, Maria Manosas, David Cortez. Cell Rep 2013
108
18

Replication Fork Reversal: Players and Guardians.
Annabel Quinet, Delphine Lemaçon, Alessandro Vindigni. Mol Cell 2017
122
18

RPA and RAD51: fork reversal, fork protection, and genome stability.
Kamakoti P Bhat, David Cortez. Nat Struct Mol Biol 2018
135
17

ATR prohibits replication catastrophe by preventing global exhaustion of RPA.
Luis Ignacio Toledo, Matthias Altmeyer, Maj-Britt Rask, Claudia Lukas, Dorthe Helena Larsen, Lou Klitgaard Povlsen, Simon Bekker-Jensen, Niels Mailand, Jiri Bartek, Jiri Lukas. Cell 2013
482
16

Polyubiquitinated PCNA recruits the ZRANB3 translocase to maintain genomic integrity after replication stress.
Alberto Ciccia, Amitabh V Nimonkar, Yiduo Hu, Ildiko Hajdu, Yathish Jagadheesh Achar, Lior Izhar, Sarah A Petit, Britt Adamson, John C Yoon, Stephen C Kowalczykowski,[...]. Mol Cell 2012
186
16

ATR-Mediated Global Fork Slowing and Reversal Assist Fork Traverse and Prevent Chromosomal Breakage at DNA Interstrand Cross-Links.
Karun Mutreja, Jana Krietsch, Jeannine Hess, Sebastian Ursich, Matteo Berti, Fabienne K Roessler, Ralph Zellweger, Malay Patra, Gilles Gasser, Massimo Lopes. Cell Rep 2018
60
26

HLTF's Ancient HIRAN Domain Binds 3' DNA Ends to Drive Replication Fork Reversal.
Andrew C Kile, Diana A Chavez, Julien Bacal, Sherif Eldirany, Dmitry M Korzhnev, Irina Bezsonova, Brandt F Eichman, Karlene A Cimprich. Mol Cell 2015
114
16

The multifaceted roles of PARP1 in DNA repair and chromatin remodelling.
Arnab Ray Chaudhuri, André Nussenzweig. Nat Rev Mol Cell Biol 2017
534
16

Mre11-dependent degradation of stalled DNA replication forks is prevented by BRCA2 and PARP1.
Songmin Ying, Freddie C Hamdy, Thomas Helleday. Cancer Res 2012
223
15

RADX Promotes Genome Stability and Modulates Chemosensitivity by Regulating RAD51 at Replication Forks.
Huzefa Dungrawala, Kamakoti P Bhat, Rémy Le Meur, Walter J Chazin, Xia Ding, Shyam K Sharan, Sarah R Wessel, Aditya A Sathe, Runxiang Zhao, David Cortez. Mol Cell 2017
88
17

BOD1L Is Required to Suppress Deleterious Resection of Stressed Replication Forks.
Martin R Higgs, John J Reynolds, Alicja Winczura, Andrew N Blackford, Valérie Borel, Edward S Miller, Anastasia Zlatanou, Jadwiga Nieminuszczy, Ellis L Ryan, Nicholas J Davies,[...]. Mol Cell 2015
103
15

Human RecQ helicases in DNA repair, recombination, and replication.
Deborah L Croteau, Venkateswarlu Popuri, Patricia L Opresko, Vilhelm A Bohr. Annu Rev Biochem 2014
323
15

RADX Modulates RAD51 Activity to Control Replication Fork Protection.
Kamakoti P Bhat, Archana Krishnamoorthy, Huzefa Dungrawala, Edwige B Garcin, Mauro Modesti, David Cortez. Cell Rep 2018
49
28

Synthetic viability by BRCA2 and PARP1/ARTD1 deficiencies.
Xia Ding, Arnab Ray Chaudhuri, Elsa Callen, Yan Pang, Kajal Biswas, Kimberly D Klarmann, Betty K Martin, Sandra Burkett, Linda Cleveland, Stacey Stauffer,[...]. Nat Commun 2016
86
16

PARP-1 ensures regulation of replication fork progression by homologous recombination on damaged DNA.
Kazuto Sugimura, Shin-Ichiro Takebayashi, Hiroshi Taguchi, Shunichi Takeda, Katsuzumi Okumura. J Cell Biol 2008
137
14

Non-enzymatic roles of human RAD51 at stalled replication forks.
Jennifer M Mason, Yuen-Ling Chan, Ralph W Weichselbaum, Douglas K Bishop. Nat Commun 2019
48
29


The essential kinase ATR: ensuring faithful duplication of a challenging genome.
Joshua C Saldivar, David Cortez, Karlene A Cimprich. Nat Rev Mol Cell Biol 2017
328
13

Functions of SMARCAL1, ZRANB3, and HLTF in maintaining genome stability.
Lisa A Poole, David Cortez. Crit Rev Biochem Mol Biol 2017
65
20

FBH1 Catalyzes Regression of Stalled Replication Forks.
Kasper Fugger, Martin Mistrik, Kai J Neelsen, Qi Yao, Ralph Zellweger, Arne Nedergaard Kousholt, Peter Haahr, Wai Kit Chu, Jiri Bartek, Massimo Lopes,[...]. Cell Rep 2015
63
20

EZH2 promotes degradation of stalled replication forks by recruiting MUS81 through histone H3 trimethylation.
Beatrice Rondinelli, Ewa Gogola, Hatice Yücel, Alexandra A Duarte, Marieke van de Ven, Roxanne van der Sluijs, Panagiotis A Konstantinopoulos, Jos Jonkers, Raphaël Ceccaldi, Sven Rottenberg,[...]. Nat Cell Biol 2017
168
13

WRNIP1 protects stalled forks from degradation and promotes fork restart after replication stress.
Giuseppe Leuzzi, Veronica Marabitti, Pietro Pichierri, Annapaola Franchitto. EMBO J 2016
53
24


Biochemical analysis of the DNA unwinding and strand annealing activities catalyzed by human RECQ1.
Sudha Sharma, Joshua A Sommers, Saba Choudhary, Jinnifer Korin Faulkner, Sheng Cui, Lucia Andreoli, Laura Muzzolini, Alessandro Vindigni, Robert M Brosh. J Biol Chem 2005
139
13

PARP1-dependent kinetics of recruitment of MRE11 and NBS1 proteins to multiple DNA damage sites.
Jean-François Haince, Darin McDonald, Amélie Rodrigue, Ugo Déry, Jean-Yves Masson, Michael J Hendzel, Guy G Poirier. J Biol Chem 2008
357
13

Rad52 prevents excessive replication fork reversal and protects from nascent strand degradation.
Eva Malacaria, Giusj Monia Pugliese, Masayoshi Honda, Veronica Marabitti, Francesca Antonella Aiello, Maria Spies, Annapaola Franchitto, Pietro Pichierri. Nat Commun 2019
40
32


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.