A citation-based method for searching scientific literature

Tatsuaki Kurosaki, Lynne E Maquat. Proc Natl Acad Sci U S A 2013
Times Cited: 80







List of co-cited articles
859 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Upf1 senses 3'UTR length to potentiate mRNA decay.
J Robert Hogg, Stephen P Goff. Cell 2010
233
67

Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay.
Jessica A Hurt, Alex D Robertson, Christopher B Burge. Genome Res 2013
160
63

Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs.
David Zünd, Andreas R Gruber, Mihaela Zavolan, Oliver Mühlemann. Nat Struct Mol Biol 2013
109
63

Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.
Isao Kashima, Akio Yamashita, Natsuko Izumi, Naoyuki Kataoka, Ryo Morishita, Shinichi Hoshino, Mutsuhito Ohno, Gideon Dreyfuss, Shigeo Ohno. Genes Dev 2006
420
61


Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise.
Joshua T Mendell, Neda A Sharifi, Jennifer L Meyers, Francisco Martinez-Murillo, Harry C Dietz. Nat Genet 2004
618
52

Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region.
Andrea B Eberle, Lukas Stalder, Hansruedi Mathys, Rodolfo Zamudio Orozco, Oliver Mühlemann. PLoS Biol 2008
215
50

NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity.
Hala Chamieh, Lionel Ballut, Fabien Bonneau, Hervé Le Hir. Nat Struct Mol Biol 2008
214
47

Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2.
Sutapa Chakrabarti, Uma Jayachandran, Fabien Bonneau, Francesca Fiorini, Claire Basquin, Silvia Domcke, Hervé Le Hir, Elena Conti. Mol Cell 2011
174
47

A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay.
Nadia Amrani, Robin Ganesan, Stephanie Kervestin, David A Mangus, Shubhendu Ghosh, Allan Jacobson. Nature 2004
359
47


A post-translational regulatory switch on UPF1 controls targeted mRNA degradation.
Tatsuaki Kurosaki, Wencheng Li, Mainul Hoque, Maximilian W-L Popp, Dmitri N Ermolenko, Bin Tian, Lynne E Maquat. Genes Dev 2014
107
46

SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells.
Andrea B Eberle, Søren Lykke-Andersen, Oliver Mühlemann, Torben Heick Jensen. Nat Struct Mol Biol 2009
275
43

N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD.
Yukiko Okada-Katsuhata, Akio Yamashita, Kei Kutsuzawa, Natsuko Izumi, Fumiki Hirahara, Shigeo Ohno. Nucleic Acids Res 2012
152
42

Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways.
Pavel V Ivanov, Niels H Gehring, Joachim B Kunz, Matthias W Hentze, Andreas E Kulozik. EMBO J 2008
224
40

SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan.
Eric Huntzinger, Isao Kashima, Maria Fauser, Jérôme Saulière, Elisa Izaurralde. RNA 2008
224
37

EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.
Marc Bühler, Silvia Steiner, Fabio Mohn, Alexandra Paillusson, Oliver Mühlemann. Nat Struct Mol Biol 2006
184
36


Autoregulation of the nonsense-mediated mRNA decay pathway in human cells.
Hasmik Yepiskoposyan, Florian Aeschimann, Daniel Nilsson, Michal Okoniewski, Oliver Mühlemann. RNA 2011
167
35

NMD: a multifaceted response to premature translational termination.
Stephanie Kervestin, Allan Jacobson. Nat Rev Mol Cell Biol 2012
379
35

Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7.
Tetsuo Ohnishi, Akio Yamashita, Isao Kashima, Thomas Schell, Kirk R Anders, Andrew Grimson, Takahisa Hachiya, Matthias W Hentze, Philip Anderson, Shigeo Ohno. Mol Cell 2003
249
35

Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay.
Olaf Isken, Yoon Ki Kim, Nao Hosoda, Greg L Mayeur, John W B Hershey, Lynne E Maquat. Cell 2008
215
33


SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay.
Akio Yamashita, Natsuko Izumi, Isao Kashima, Tetsuo Ohnishi, Bonnie Saari, Yukiko Katsuhata, Reiko Muramatsu, Tomoko Morita, Akihiro Iwamatsu, Takahisa Hachiya,[...]. Genes Dev 2009
170
32

Nonsense-mediated mRNA decay - mechanisms of substrate mRNA recognition and degradation in mammalian cells.
Christoph Schweingruber, Simone C Rufener, David Zünd, Akio Yamashita, Oliver Mühlemann. Biochim Biophys Acta 2013
242
30

RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD.
Lulu Huang, Chih-Hong Lou, Waikin Chan, Eleen Y Shum, Ada Shao, Erica Stone, Rachid Karam, Hye-Won Song, Miles F Wilkinson. Mol Cell 2011
140
30


NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements.
Joachim Weischenfeldt, Inge Damgaard, David Bryder, Kim Theilgaard-Mönch, Lina A Thoren, Finn Cilius Nielsen, Sten Eirik W Jacobsen, Claus Nerlov, Bo Torben Porse. Genes Dev 2008
191
28



Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability.
S M Medghalchi, P A Frischmeyer, J T Mendell, A G Kelly, A M Lawler, H C Dietz. Hum Mol Genet 2001
209
27

A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay.
Isabelle Behm-Ansmant, David Gatfield, Jan Rehwinkel, Valérie Hilgers, Elisa Izaurralde. EMBO J 2007
158
27



Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements.
Niels H Gehring, Joachim B Kunz, Gabriele Neu-Yilik, Stephen Breit, Marcelo H Viegas, Matthias W Hentze, Andreas E Kulozik. Mol Cell 2005
231
27

A novel phosphorylation-independent interaction between SMG6 and UPF1 is essential for human NMD.
Pamela Nicholson, Christoph Josi, Hitomi Kurosawa, Akio Yamashita, Oliver Mühlemann. Nucleic Acids Res 2014
52
42

Phospho-dependent and phospho-independent interactions of the helicase UPF1 with the NMD factors SMG5-SMG7 and SMG6.
Sutapa Chakrabarti, Fabien Bonneau, Steffen Schüssler, Elfriede Eppinger, Elena Conti. Nucleic Acids Res 2014
63
34

Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity.
Suzanne R Lee, Gabriel A Pratt, Fernando J Martinez, Gene W Yeo, Jens Lykke-Andersen. Mol Cell 2015
68
32


SMG7 acts as a molecular link between mRNA surveillance and mRNA decay.
Leonie Unterholzner, Elisa Izaurralde. Mol Cell 2004
218
25

3' UTR length and messenger ribonucleoprotein composition determine endocleavage efficiencies at termination codons.
Volker Boehm, Nejc Haberman, Franziska Ottens, Jernej Ule, Niels H Gehring. Cell Rep 2014
56
35

Identification of elements in human long 3' UTRs that inhibit nonsense-mediated decay.
Kalodiah G Toma, Indrani Rebbapragada, Sébastien Durand, Jens Lykke-Andersen. RNA 2015
60
33

SMD and NMD are competitive pathways that contribute to myogenesis: effects on PAX3 and myogenin mRNAs.
Chenguang Gong, Yoon Ki Kim, Collynn F Woeller, Yalan Tang, Lynne E Maquat. Genes Dev 2009
136
23

Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability.
Hidenori Tani, Naoto Imamachi, Kazi Abdus Salam, Rena Mizutani, Kenichi Ijiri, Takuma Irie, Tetsushi Yada, Yutaka Suzuki, Nobuyoshi Akimitsu. RNA Biol 2012
113
23

Comparison of EJC-enhanced and EJC-independent NMD in human cells reveals two partially redundant degradation pathways.
Stefanie Metze, Veronika A Herzog, Marc-David Ruepp, Oliver Mühlemann. RNA 2013
76
25

Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes.
Søren Lykke-Andersen, Yun Chen, Britt R Ardal, Berit Lilje, Johannes Waage, Albin Sandelin, Torben Heick Jensen. Genes Dev 2014
114
23


The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3' end.
Roberto Melero, Gretel Buchwald, Raquel Castaño, Monika Raabe, David Gil, Melisa Lázaro, Henning Urlaub, Elena Conti, Oscar Llorca. Nat Struct Mol Biol 2012
54
33

Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations.
Isabel Peixeiro, Ângela Inácio, Cristina Barbosa, Ana Luísa Silva, Stephen A Liebhaber, Luísa Romão. Nucleic Acids Res 2012
69
26

Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells.
Skye A Schmidt, Patricia L Foley, Dong-Hoon Jeong, Linda A Rymarquis, Francis Doyle, Scott A Tenenbaum, Joel G Belasco, Pamela J Green. Nucleic Acids Res 2015
67
26


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.