A citation-based method for searching scientific literature

Hui Gong, Shaoqun Zeng, Cheng Yan, Xiaohua Lv, Zhongqin Yang, Tonghui Xu, Zhao Feng, Wenxiang Ding, Xiaoli Qi, Anan Li, Jingpeng Wu, Qingming Luo. Neuroimage 2013
Times Cited: 104







List of co-cited articles
709 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain.
Anan Li, Hui Gong, Bin Zhang, Qingdi Wang, Cheng Yan, Jingpeng Wu, Qian Liu, Shaoqun Zeng, Qingming Luo. Science 2010
228
73

Serial two-photon tomography for automated ex vivo mouse brain imaging.
Timothy Ragan, Lolahon R Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H Sebastian Seung, Pavel Osten. Nat Methods 2012
307
54

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
673
37

A platform for brain-wide imaging and reconstruction of individual neurons.
Michael N Economo, Nathan G Clack, Luke D Lavis, Charles R Gerfen, Karel Svoboda, Eugene W Myers, Jayaram Chandrashekar. Elife 2016
175
37

Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
35

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level.
Hui Gong, Dongli Xu, Jing Yuan, Xiangning Li, Congdi Guo, Jie Peng, Yuxin Li, Lindsay A Schwarz, Anan Li, Bihe Hu,[...]. Nat Commun 2016
105
32

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi,[...]. Cell 2014
618
31

Visualization of brain circuits using two-photon fluorescence micro-optical sectioning tomography.
Ting Zheng, Zhongqing Yang, Anan Li, Xiaohua Lv, Zhenqiao Zhou, Xiaojun Wang, Xiaoli Qi, Shiwei Li, Qingming Luo, Hui Gong,[...]. Opt Express 2013
40
70

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
27

Mapping brain circuitry with a light microscope.
Pavel Osten, Troy W Margrie. Nat Methods 2013
131
25

Advanced CLARITY for rapid and high-resolution imaging of intact tissues.
Raju Tomer, Li Ye, Brian Hsueh, Karl Deisseroth. Nat Protoc 2014
451
24

CLARITY for mapping the nervous system.
Kwanghun Chung, Karl Deisseroth. Nat Methods 2013
387
23

Three-dimensional imaging of solvent-cleared organs using 3DISCO.
Ali Ertürk, Klaus Becker, Nina Jährling, Christoph P Mauch, Caroline D Hojer, Jackson G Egen, Farida Hellal, Frank Bradke, Morgan Sheng, Hans-Ulrich Dodt. Nat Protoc 2012
505
23

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
624
23

Chemical reactivation of quenched fluorescent protein molecules enables resin-embedded fluorescence microimaging.
Hanqing Xiong, Zhenqiao Zhou, Mingqiang Zhu, Xiaohua Lv, Anan Li, Shiwei Li, Longhui Li, Tao Yang, Siming Wang, Zhongqin Yang,[...]. Nat Commun 2014
50
44

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain.
L Silvestri, A Bria, L Sacconi, G Iannello, F S Pavone. Opt Express 2012
119
21

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.
Hiroshi Hama, Hiroshi Kurokawa, Hiroyuki Kawano, Ryoko Ando, Tomomi Shimogori, Hisayori Noda, Kiyoko Fukami, Asako Sakaue-Sawano, Atsushi Miyawaki. Nat Neurosci 2011
709
21

Single-cell phenotyping within transparent intact tissue through whole-body clearing.
Bin Yang, Jennifer B Treweek, Rajan P Kulkarni, Benjamin E Deverman, Chun-Kan Chen, Eric Lubeck, Sheel Shah, Long Cai, Viviana Gradinaru. Cell 2014
514
21

Imaging neuronal subsets in transgenic mice expressing multiple spectral variants of GFP.
G Feng, R H Mellor, M Bernstein, C Keller-Peck, Q T Nguyen, M Wallace, J M Nerbonne, J W Lichtman, J R Sanes. Neuron 2000
19


Clarifying Tissue Clearing.
Douglas S Richardson, Jeff W Lichtman. Cell 2015
528
18



NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model.
Tingwei Quan, Ting Zheng, Zhongqing Yang, Wenxiang Ding, Shiwei Li, Jing Li, Hang Zhou, Qingming Luo, Hui Gong, Shaoqun Zeng. Sci Rep 2013
25
64

NeuroGPS-Tree: automatic reconstruction of large-scale neuronal populations with dense neurites.
Tingwei Quan, Hang Zhou, Jing Li, Shiwei Li, Anan Li, Yuxin Li, Xiaohua Lv, Qingming Luo, Hui Gong, Shaoqun Zeng. Nat Methods 2016
48
33

Correlations of neuronal and microvascular densities in murine cortex revealed by direct counting and colocalization of nuclei and vessels.
Philbert S Tsai, John P Kaufhold, Pablo Blinder, Beth Friedman, Patrick J Drew, Harvey J Karten, Patrick D Lyden, David Kleinfeld. J Neurosci 2009
309
15

Neural networks of the mouse neocortex.
Brian Zingg, Houri Hintiryan, Lin Gou, Monica Y Song, Maxwell Bay, Michael S Bienkowski, Nicholas N Foster, Seita Yamashita, Ian Bowman, Arthur W Toga,[...]. Cell 2014
355
15

ScaleS: an optical clearing palette for biological imaging.
Hiroshi Hama, Hiroyuki Hioki, Kana Namiki, Tetsushi Hoshida, Hiroshi Kurokawa, Fumiyoshi Ishidate, Takeshi Kaneko, Takumi Akagi, Takashi Saito, Takaomi Saido,[...]. Nat Neurosci 2015
284
15

Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
14

ClearT: a detergent- and solvent-free clearing method for neuronal and non-neuronal tissue.
Takaaki Kuwajima, Austen A Sitko, Punita Bhansali, Chris Jurgens, William Guido, Carol Mason. Development 2013
273
14

BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images.
Hanchuan Peng, Michael Hawrylycz, Jane Roskams, Sean Hill, Nelson Spruston, Erik Meijering, Giorgio A Ascoli. Neuron 2015
94
14

Chemical clearing and dehydration of GFP expressing mouse brains.
Klaus Becker, Nina Jährling, Saiedeh Saghafi, Reto Weiler, Hans-Ulrich Dodt. PLoS One 2012
171
13

Development of a plastic embedding method for large-volume and fluorescent-protein-expressing tissues.
Zhongqin Yang, Bihe Hu, Yuhui Zhang, Qingming Luo, Hui Gong. PLoS One 2013
29
44

3D BrainCV: simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution.
Jingpeng Wu, Yong He, Zhongqin Yang, Congdi Guo, Qingming Luo, Wei Zhou, Shangbin Chen, Anan Li, Benyi Xiong, Tao Jiang,[...]. Neuroimage 2014
57
22

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
284
13

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
12

A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale.
Jason W Bohland, Caizhi Wu, Helen Barbas, Hemant Bokil, Mihail Bota, Hans C Breiter, Hollis T Cline, John C Doyle, Peter J Freed, Ralph J Greenspan,[...]. PLoS Comput Biol 2009
172
12


Shrinkage-mediated imaging of entire organs and organisms using uDISCO.
Chenchen Pan, Ruiyao Cai, Francesca Paola Quacquarelli, Alireza Ghasemigharagoz, Athanasios Lourbopoulos, Paweł Matryba, Nikolaus Plesnila, Martin Dichgans, Farida Hellal, Ali Ertürk. Nat Methods 2016
261
12

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets.
Hanchuan Peng, Zongcai Ruan, Fuhui Long, Julie H Simpson, Eugene W Myers. Nat Biotechnol 2010
349
11

Neuron tracing in perspective.
Erik Meijering. Cytometry A 2010
183
11

A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
975
11

Modified Golgi-Cox method for micrometer scale sectioning of the whole mouse brain.
Bin Zhang, Anan Li, Zhongqin Yang, Jingpeng Wu, Qingming Luo, Hui Gong. J Neurosci Methods 2011
27
40

High-Speed and Scalable Whole-Brain Imaging in Rodents and Primates.
Kaoru Seiriki, Atsushi Kasai, Takeshi Hashimoto, Wiebke Schulze, Misaki Niu, Shun Yamaguchi, Takanobu Nakazawa, Ken-Ichi Inoue, Shiori Uezono, Masahiko Takada,[...]. Neuron 2017
45
24

Genetic dissection of neural circuits.
Liqun Luo, Edward M Callaway, Karel Svoboda. Neuron 2008
508
10

Cortical representations of olfactory input by trans-synaptic tracing.
Kazunari Miyamichi, Fernando Amat, Farshid Moussavi, Chen Wang, Ian Wickersham, Nicholas R Wall, Hiroki Taniguchi, Bosiljka Tasic, Z Josh Huang, Zhigang He,[...]. Nature 2011
325
10

Retrograde neuronal tracing with a deletion-mutant rabies virus.
Ian R Wickersham, Stefan Finke, Karl-Klaus Conzelmann, Edward M Callaway. Nat Methods 2007
391
10

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
10


Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury.
Ali Ertürk, Christoph P Mauch, Farida Hellal, Friedrich Förstner, Tara Keck, Klaus Becker, Nina Jährling, Heinz Steffens, Melanie Richter, Mark Hübener,[...]. Nat Med 2011
211
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.