A citation-based method for searching scientific literature

Takaaki Kuwajima, Austen A Sitko, Punita Bhansali, Chris Jurgens, William Guido, Carol Mason. Development 2013
Times Cited: 273







List of co-cited articles
658 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.
Hiroshi Hama, Hiroshi Kurokawa, Hiroyuki Kawano, Ryoko Ando, Tomomi Shimogori, Hisayori Noda, Kiyoko Fukami, Asako Sakaue-Sawano, Atsushi Miyawaki. Nat Neurosci 2011
709
68

Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
66

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi,[...]. Cell 2014
618
66

Three-dimensional imaging of solvent-cleared organs using 3DISCO.
Ali Ertürk, Klaus Becker, Nina Jährling, Christoph P Mauch, Caroline D Hojer, Jackson G Egen, Farida Hellal, Frank Bradke, Morgan Sheng, Hans-Ulrich Dodt. Nat Protoc 2012
505
62

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
624
60

Single-cell phenotyping within transparent intact tissue through whole-body clearing.
Bin Yang, Jennifer B Treweek, Rajan P Kulkarni, Benjamin E Deverman, Chun-Kan Chen, Eric Lubeck, Sheel Shah, Long Cai, Viviana Gradinaru. Cell 2014
514
54

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
673
53

Clarifying Tissue Clearing.
Douglas S Richardson, Jeff W Lichtman. Cell 2015
528
52

ScaleS: an optical clearing palette for biological imaging.
Hiroshi Hama, Hiroyuki Hioki, Kana Namiki, Tetsushi Hoshida, Hiroshi Kurokawa, Fumiyoshi Ishidate, Takeshi Kaneko, Takumi Akagi, Takashi Saito, Takaomi Saido,[...]. Nat Neurosci 2015
284
50

Shrinkage-mediated imaging of entire organs and organisms using uDISCO.
Chenchen Pan, Ruiyao Cai, Francesca Paola Quacquarelli, Alireza Ghasemigharagoz, Athanasios Lourbopoulos, Paweł Matryba, Nikolaus Plesnila, Martin Dichgans, Farida Hellal, Ali Ertürk. Nat Methods 2016
261
44

Whole-body imaging with single-cell resolution by tissue decolorization.
Kazuki Tainaka, Shimpei I Kubota, Takeru Q Suyama, Etsuo A Susaki, Dimitri Perrin, Maki Ukai-Tadenuma, Hideki Ukai, Hiroki R Ueda. Cell 2014
245
37

Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems.
Evan Murray, Jae Hun Cho, Daniel Goodwin, Taeyun Ku, Justin Swaney, Sung-Yon Kim, Heejin Choi, Young-Gyun Park, Jeong-Yoon Park, Austin Hubbert,[...]. Cell 2015
197
37

Advanced CLARITY for rapid and high-resolution imaging of intact tissues.
Raju Tomer, Li Ye, Brian Hsueh, Karl Deisseroth. Nat Protoc 2014
451
35

Super-Resolution Mapping of Neuronal Circuitry With an Index-Optimized Clearing Agent.
Meng-Tsen Ke, Yasuhiro Nakai, Satoshi Fujimoto, Rie Takayama, Shuhei Yoshida, Tomoya S Kitajima, Makoto Sato, Takeshi Imai. Cell Rep 2016
128
34

Scalable and DiI-compatible optical clearance of the mammalian brain.
Bing Hou, Dan Zhang, Shan Zhao, Mengping Wei, Zaifu Yang, Shaoxia Wang, Jiarui Wang, Xin Zhang, Bing Liu, Lingzhong Fan,[...]. Front Neuroanat 2015
102
29

Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling.
Kazuki Tainaka, Akihiro Kuno, Shimpei I Kubota, Tatzya Murakami, Hiroki R Ueda. Annu Rev Cell Dev Biol 2016
131
28

Chemical clearing and dehydration of GFP expressing mouse brains.
Klaus Becker, Nina Jährling, Saiedeh Saghafi, Reto Weiler, Hans-Ulrich Dodt. PLoS One 2012
171
27

ACT-PRESTO: Rapid and consistent tissue clearing and labeling method for 3-dimensional (3D) imaging.
Eunsoo Lee, Jungyoon Choi, Youhwa Jo, Joo Yeon Kim, Yu Jin Jang, Hye Myeong Lee, So Yeun Kim, Ho-Jae Lee, Keunchang Cho, Neoncheol Jung,[...]. Sci Rep 2016
116
27

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
284
26

Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Hiroko Yukinaga, Akihiro Kuno, Hiroki R Ueda. Nat Protoc 2015
280
26

Multiplex, quantitative cellular analysis in large tissue volumes with clearing-enhanced 3D microscopy (Ce3D).
Weizhe Li, Ronald N Germain, Michael Y Gerner. Proc Natl Acad Sci U S A 2017
127
26

Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents.
Kazuki Tainaka, Tatsuya C Murakami, Etsuo A Susaki, Chika Shimizu, Rie Saito, Kei Takahashi, Akiko Hayashi-Takagi, Hiroshi Sekiya, Yasunobu Arima, Satoshi Nojima,[...]. Cell Rep 2018
80
32

Tissue clearing of both hard and soft tissue organs with the PEGASOS method.
Dian Jing, Shiwen Zhang, Wenjing Luo, Xiaofei Gao, Yi Men, Chi Ma, Xiaohua Liu, Yating Yi, Abhijit Bugde, Bo O Zhou,[...]. Cell Res 2018
104
25

Stochastic electrotransport selectively enhances the transport of highly electromobile molecules.
Sung-Yon Kim, Jae Hun Cho, Evan Murray, Naveed Bakh, Heejin Choi, Kimberly Ohn, Luzdary Ruelas, Austin Hubbert, Meg McCue, Sara L Vassallo,[...]. Proc Natl Acad Sci U S A 2015
96
25

A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing.
Tatsuya C Murakami, Tomoyuki Mano, Shu Saikawa, Shuhei A Horiguchi, Daichi Shigeta, Kousuke Baba, Hiroshi Sekiya, Yoshihiro Shimizu, Kenji F Tanaka, Hiroshi Kiyonari,[...]. Nat Neurosci 2018
101
24

Fluorescent-protein stabilization and high-resolution imaging of cleared, intact mouse brains.
Martin K Schwarz, Annemarie Scherbarth, Rolf Sprengel, Johann Engelhardt, Patrick Theer, Guenter Giese. PLoS One 2015
100
23

Bone CLARITY: Clearing, imaging, and computational analysis of osteoprogenitors within intact bone marrow.
Alon Greenbaum, Ken Y Chan, Tatyana Dobreva, David Brown, Deepak H Balani, Rogely Boyce, Henry M Kronenberg, Helen J McBride, Viviana Gradinaru. Sci Transl Med 2017
92
25

Fully Automated Evaluation of Total Glomerular Number and Capillary Tuft Size in Nephritic Kidneys Using Lightsheet Microscopy.
Anika Klingberg, Anja Hasenberg, Isis Ludwig-Portugall, Anna Medyukhina, Linda Männ, Alexandra Brenzel, Daniel R Engel, Marc Thilo Figge, Christian Kurts, Matthias Gunzer. J Am Soc Nephrol 2017
137
22

Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.
Jennifer B Treweek, Ken Y Chan, Nicholas C Flytzanis, Bin Yang, Benjamin E Deverman, Alon Greenbaum, Antti Lignell, Cheng Xiao, Long Cai, Mark S Ladinsky,[...]. Nat Protoc 2015
143
21

RTF: a rapid and versatile tissue optical clearing method.
Tingting Yu, Jingtan Zhu, Yusha Li, Yilin Ma, Jianru Wang, Xinran Cheng, Sen Jin, Qingtao Sun, Xiangning Li, Hui Gong,[...]. Sci Rep 2018
33
63

Protection of tissue physicochemical properties using polyfunctional crosslinkers.
Young-Gyun Park, Chang Ho Sohn, Ritchie Chen, Margaret McCue, Dae Hee Yun, Gabrielle T Drummond, Taeyun Ku, Nicholas B Evans, Hayeon Caitlyn Oak, Wendy Trieu,[...]. Nat Biotechnol 2018
69
30

Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury.
Ali Ertürk, Christoph P Mauch, Farida Hellal, Friedrich Förstner, Tara Keck, Klaus Becker, Nina Jährling, Heinz Steffens, Melanie Richter, Mark Hübener,[...]. Nat Med 2011
211
20

Whole-Body Profiling of Cancer Metastasis with Single-Cell Resolution.
Shimpei I Kubota, Kei Takahashi, Jun Nishida, Yasuyuki Morishita, Shogo Ehata, Kazuki Tainaka, Kohei Miyazono, Hiroki R Ueda. Cell Rep 2017
110
20

Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull-meninges connections.
Ruiyao Cai, Chenchen Pan, Alireza Ghasemigharagoz, Mihail Ivilinov Todorov, Benjamin Förstera, Shan Zhao, Harsharan S Bhatia, Arnaldo Parra-Damas, Leander Mrowka, Delphine Theodorou,[...]. Nat Neurosci 2019
109
20

A versatile clearing agent for multi-modal brain imaging.
Irene Costantini, Jean-Pierre Ghobril, Antonino Paolo Di Giovanna, Anna Letizia Allegra Mascaro, Ludovico Silvestri, Marie Caroline Müllenbroich, Leonardo Onofri, Valerio Conti, Francesco Vanzi, Leonardo Sacconi,[...]. Sci Rep 2015
123
18


FDISCO: Advanced solvent-based clearing method for imaging whole organs.
Yisong Qi, Tingting Yu, Jianyi Xu, Peng Wan, Yilin Ma, Jingtan Zhu, Yusha Li, Hui Gong, Qingming Luo, Dan Zhu. Sci Adv 2019
62
29

Optical imaging. Expansion microscopy.
Fei Chen, Paul W Tillberg, Edward S Boyden. Science 2015
471
17

Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues.
Taeyun Ku, Justin Swaney, Jeong-Yoon Park, Alexandre Albanese, Evan Murray, Jae Hun Cho, Young-Gyun Park, Vamsi Mangena, Jiapei Chen, Kwanghun Chung. Nat Biotechnol 2016
146
16

A rapid optical clearing protocol using 2,2'-thiodiethanol for microscopic observation of fixed mouse brain.
Yuka Aoyagi, Ryosuke Kawakami, Hisayuki Osanai, Terumasa Hibi, Tomomi Nemoto. PLoS One 2015
74
21

UbasM: An effective balanced optical clearing method for intact biomedical imaging.
Lingling Chen, Guiye Li, Yamin Li, Yingchao Li, Haiou Zhu, Li Tang, Paul French, James McGinty, Shuangchen Ruan. Sci Rep 2017
34
47

Clearing and Labeling Techniques for Large-Scale Biological Tissues.
Jinyoung Seo, Minjin Choe, Sung-Yon Kim. Mol Cells 2016
59
23

A beginner's guide to tissue clearing.
Pablo Ariel. Int J Biochem Cell Biol 2017
46
30

Multiplexed Intact-Tissue Transcriptional Analysis at Cellular Resolution.
Emily Lauren Sylwestrak, Priyamvada Rajasethupathy, Matthew Arnot Wright, Anna Jaffe, Karl Deisseroth. Cell 2016
77
18

Three-Dimensional Study of Alzheimer's Disease Hallmarks Using the iDISCO Clearing Method.
Thomas Liebmann, Nicolas Renier, Karima Bettayeb, Paul Greengard, Marc Tessier-Lavigne, Marc Flajolet. Cell Rep 2016
82
17

Tridimensional Visualization and Analysis of Early Human Development.
Morgane Belle, David Godefroy, Gérard Couly, Samuel A Malone, Francis Collier, Paolo Giacobini, Alain Chédotal. Cell 2017
123
14

High-resolution imaging of fluorescent whole mouse brains using stabilised organic media (sDISCO).
Christian Hahn, Klaus Becker, Saiedeh Saghafi, Marko Pende, Alma Avdibašić, Massih Foroughipour, Daniel E Heinz, Carsten T Wotjak, Hans-Ulrich Dodt. J Biophotonics 2019
28
50

Correlations of neuronal and microvascular densities in murine cortex revealed by direct counting and colocalization of nuclei and vessels.
Philbert S Tsai, John P Kaufhold, Pablo Blinder, Beth Friedman, Patrick J Drew, Harvey J Karten, Patrick D Lyden, David Kleinfeld. J Neurosci 2009
309
13

Cellular and Molecular Probing of Intact Human Organs.
Shan Zhao, Mihail Ivilinov Todorov, Ruiyao Cai, Rami Ai -Maskari, Hanno Steinke, Elisabeth Kemter, Hongcheng Mai, Zhouyi Rong, Martin Warmer, Karen Stanic,[...]. Cell 2020
57
22


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.