A citation-based method for searching scientific literature

Martin T Ferris, David L Aylor, Daniel Bottomly, Alan C Whitmore, Lauri D Aicher, Timothy A Bell, Birgit Bradel-Tretheway, Janine T Bryan, Ryan J Buus, Lisa E Gralinski, Bart L Haagmans, Leonard McMillan, Darla R Miller, Elizabeth Rosenzweig, William Valdar, Jeremy Wang, Gary A Churchill, David W Threadgill, Shannon K McWeeney, Michael G Katze, Fernando Pardo-Manuel de Villena, Ralph S Baric, Mark T Heise. PLoS Pathog 2013
Times Cited: 125







List of co-cited articles
836 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Host genetic diversity enables Ebola hemorrhagic fever pathogenesis and resistance.
Angela L Rasmussen, Atsushi Okumura, Martin T Ferris, Richard Green, Friederike Feldmann, Sara M Kelly, Dana P Scott, David Safronetz, Elaine Haddock, Rachel LaCasse,[...]. Science 2014
163
50

The Collaborative Cross, a community resource for the genetic analysis of complex traits.
Gary A Churchill, David C Airey, Hooman Allayee, Joe M Angel, Alan D Attie, Jackson Beatty, William D Beavis, John K Belknap, Beth Bennett, Wade Berrettini,[...]. Nat Genet 2004
673
46


Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross.
Lisa E Gralinski, Martin T Ferris, David L Aylor, Alan C Whitmore, Richard Green, Matthew B Frieman, Damon Deming, Vineet D Menachery, Darla R Miller, Ryan J Buus,[...]. PLoS Genet 2015
84
47

Collaborative Cross mice and their power to map host susceptibility to Aspergillus fumigatus infection.
Caroline Durrant, Hanna Tayem, Binnaz Yalcin, James Cleak, Leo Goodstadt, Fernando Pardo-Manuel de Villena, Richard Mott, Fuad A Iraqi. Genome Res 2011
99
28

Mouse genomic variation and its effect on phenotypes and gene regulation.
Thomas M Keane, Leo Goodstadt, Petr Danecek, Michael A White, Kim Wong, Binnaz Yalcin, Andreas Heger, Avigail Agam, Guy Slater, Martin Goodson,[...]. Nature 2011
919
28

Genetic analysis of complex traits in the emerging Collaborative Cross.
David L Aylor, William Valdar, Wendy Foulds-Mathes, Ryan J Buus, Ricardo A Verdugo, Ralph S Baric, Martin T Ferris, Jeff A Frelinger, Mark Heise, Matt B Frieman,[...]. Genome Res 2011
231
27

Genetic diversity in the collaborative cross model recapitulates human West Nile virus disease outcomes.
Jessica B Graham, Sunil Thomas, Jessica Swarts, Aimee A McMillan, Martin T Ferris, Mehul S Suthar, Piper M Treuting, Renee Ireton, Michael Gale, Jennifer M Lund. mBio 2015
55
49

Expression quantitative trait Loci for extreme host response to influenza a in pre-collaborative cross mice.
Daniel Bottomly, Martin T Ferris, Lauri D Aicher, Elizabeth Rosenzweig, Alan Whitmore, David L Aylor, Bart L Haagmans, Lisa E Gralinski, Birgit G Bradel-Tretheway, Janine T Bryan,[...]. G3 (Bethesda) 2012
62
40

The Collaborative Cross as a resource for modeling human disease: CC011/Unc, a new mouse model for spontaneous colitis.
Allison R Rogala, Andrew P Morgan, Alexis M Christensen, Terry J Gooch, Timothy A Bell, Darla R Miller, Virginia L Godfrey, Fernando Pardo-Manuel de Villena. Mamm Genome 2014
48
50

The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics.
Adam Roberts, Fernando Pardo-Manuel de Villena, Wei Wang, Leonard McMillan, David W Threadgill. Mamm Genome 2007
167
23

Genetic analysis of hematological parameters in incipient lines of the collaborative cross.
Samir N P Kelada, David L Aylor, Bailey C E Peck, Joseph F Ryan, Urraca Tavarez, Ryan J Buus, Darla R Miller, Elissa J Chesler, David W Threadgill, Gary A Churchill,[...]. G3 (Bethesda) 2012
57
36

Using the emerging Collaborative Cross to probe the immune system.
J Phillippi, Y Xie, D R Miller, T A Bell, Z Zhang, A B Lenarcic, D L Aylor, S H Krovi, D W Threadgill, F Pardo-Manuel de Villena,[...]. Genes Immun 2014
46
45

Status and access to the Collaborative Cross population.
Catherine E Welsh, Darla R Miller, Kenneth F Manly, Jeremy Wang, Leonard McMillan, Grant Morahan, Richard Mott, Fuad A Iraqi, David W Threadgill, Fernando Pardo-Manuel de Villena. Mamm Genome 2012
84
23


Quantitative trait locus mapping methods for diversity outbred mice.
Daniel M Gatti, Karen L Svenson, Andrey Shabalin, Long-Yang Wu, William Valdar, Petr Simecek, Neal Goodwin, Riyan Cheng, Daniel Pomp, Abraham Palmer,[...]. G3 (Bethesda) 2014
97
19

High-resolution genetic mapping using the Mouse Diversity outbred population.
Karen L Svenson, Daniel M Gatti, William Valdar, Catherine E Welsh, Riyan Cheng, Elissa J Chesler, Abraham A Palmer, Leonard McMillan, Gary A Churchill. Genetics 2012
255
18

Genomes of the Mouse Collaborative Cross.
Anuj Srivastava, Andrew P Morgan, Maya L Najarian, Vishal Kumar Sarsani, J Sebastian Sigmon, John R Shorter, Anwica Kashfeen, Rachel C McMullan, Lucy H Williams, Paola Giusti-Rodríguez,[...]. Genetics 2017
82
21

Genetic dissection of complex and quantitative traits: from fantasy to reality via a community effort.
David W Threadgill, Kent W Hunter, Robert W Williams. Mamm Genome 2002
139
17

The Diversity Outbred mouse population.
Gary A Churchill, Daniel M Gatti, Steven C Munger, Karen L Svenson. Mamm Genome 2012
196
17

A Mouse Model of Chronic West Nile Virus Disease.
Jessica B Graham, Jessica L Swarts, Courtney Wilkins, Sunil Thomas, Richard Green, Aimee Sekine, Kathleen M Voss, Renee C Ireton, Michael Mooney, Gabrielle Choonoo,[...]. PLoS Pathog 2016
31
54

Influenza virus-susceptible mice carry Mx genes with a large deletion or a nonsense mutation.
P Staeheli, R Grob, E Meier, J G Sutcliffe, O Haller. Mol Cell Biol 1988
223
16

Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice.
Lisa E Gralinski, Vineet D Menachery, Andrew P Morgan, Allison L Totura, Anne Beall, Jacob Kocher, Jessica Plante, D Corinne Harrison-Shostak, Alexandra Schäfer, Fernando Pardo-Manuel de Villena,[...]. G3 (Bethesda) 2017
41
39

A method for fine mapping quantitative trait loci in outbred animal stocks.
R Mott, C J Talbot, M G Turri, A C Collins, J Flint. Proc Natl Acad Sci U S A 2000
316
15

The collaborative cross: a recombinant inbred mouse population for the systems genetic era.
David W Threadgill, Darla R Miller, Gary A Churchill, Fernando Pardo-Manuel de Villena. ILAR J 2011
102
15

Architecture of energy balance traits in emerging lines of the Collaborative Cross.
Wendy Foulds Mathes, David L Aylor, Darla R Miller, Gary A Churchill, Elissa J Chesler, Fernando Pardo-Manuel de Villena, David W Threadgill, Daniel Pomp. Am J Physiol Endocrinol Metab 2011
47
31

Host genetic variation affects resistance to infection with a highly pathogenic H5N1 influenza A virus in mice.
Adrianus C M Boon, Jennifer deBeauchamp, Anna Hollmann, Jennifer Luke, Malak Kotb, Sarah Rowe, David Finkelstein, Geoffrey Neale, Lu Lu, Robert W Williams,[...]. J Virol 2009
126
15


IFITM3 restricts the morbidity and mortality associated with influenza.
Aaron R Everitt, Simon Clare, Thomas Pertel, Sinu P John, Rachael S Wash, Sarah E Smith, Christopher R Chin, Eric M Feeley, Jennifer S Sims, David J Adams,[...]. Nature 2012
459
14

Influenza H3N2 infection of the collaborative cross founder strains reveals highly divergent host responses and identifies a unique phenotype in CAST/EiJ mice.
Sarah R Leist, Carolin Pilzner, Judith M A van den Brand, Leonie Dengler, Robert Geffers, Thijs Kuiken, Rudi Balling, Heike Kollmus, Klaus Schughart. BMC Genomics 2016
32
43

The Collaborative Cross at Oak Ridge National Laboratory: developing a powerful resource for systems genetics.
Elissa J Chesler, Darla R Miller, Lisa R Branstetter, Leslie D Galloway, Barbara L Jackson, Vivek M Philip, Brynn H Voy, Cymbeline T Culiat, David W Threadgill, Robert W Williams,[...]. Mamm Genome 2008
176
13

Subspecific origin and haplotype diversity in the laboratory mouse.
Hyuna Yang, Jeremy R Wang, John P Didion, Ryan J Buus, Timothy A Bell, Catherine E Welsh, François Bonhomme, Alex Hon-Tsen Yu, Michael W Nachman, Jaroslav Pialek,[...]. Nat Genet 2011
277
13



Genetic analysis in the Collaborative Cross breeding population.
Vivek M Philip, Greta Sokoloff, Cheryl L Ackert-Bicknell, Martin Striz, Lisa Branstetter, Melissa A Beckmann, Jason S Spence, Barbara L Jackson, Leslie D Galloway, Paul Barker,[...]. Genome Res 2011
104
12

Host genetic background strongly influences the response to influenza a virus infections.
Barkha Srivastava, Paulina Błazejewska, Manuela Hessmann, Dunja Bruder, Robert Geffers, Susanne Mauel, Achim D Gruber, Klaus Schughart. PLoS One 2009
143
12

Oas1b-dependent Immune Transcriptional Profiles of West Nile Virus Infection in the Collaborative Cross.
Richard Green, Courtney Wilkins, Sunil Thomas, Aimee Sekine, Duncan M Hendrick, Kathleen Voss, Renee C Ireton, Michael Mooney, Jennifer T Go, Gabrielle Choonoo,[...]. G3 (Bethesda) 2017
20
60


Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross.
John R Shorter, Fanny Odet, David L Aylor, Wenqi Pan, Chia-Yu Kao, Chen-Ping Fu, Andrew P Morgan, Seth Greenstein, Timothy A Bell, Alicia M Stevans,[...]. Genetics 2017
38
28

The Mouse Universal Genotyping Array: From Substrains to Subspecies.
Andrew P Morgan, Chen-Ping Fu, Chia-Yu Kao, Catherine E Welsh, John P Didion, Liran Yadgary, Leeanna Hyacinth, Martin T Ferris, Timothy A Bell, Darla R Miller,[...]. G3 (Bethesda) 2015
84
13

Extensive Homeostatic T Cell Phenotypic Variation within the Collaborative Cross.
Jessica B Graham, Jessica L Swarts, Michael Mooney, Gabrielle Choonoo, Sophia Jeng, Darla R Miller, Martin T Ferris, Shannon McWeeney, Jennifer M Lund. Cell Rep 2017
22
50

Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression.
Hao Xiong, Juliet Morrison, Martin T Ferris, Lisa E Gralinski, Alan C Whitmore, Richard Green, Matthew J Thomas, Jennifer Tisoncik-Go, Gary P Schroth, Fernando Pardo-Manuel de Villena,[...]. G3 (Bethesda) 2014
14
71

Ten years of the collaborative cross.
David W Threadgill, Gary A Churchill. G3 (Bethesda) 2012
60
16

Ten years of the Collaborative Cross.
David W Threadgill, Gary A Churchill. Genetics 2012
80
12

Distinct gene loci control the host response to influenza H1N1 virus infection in a time-dependent manner.
Tatiana Nedelko, Heike Kollmus, Frank Klawonn, Sabine Spijker, Lu Lu, Manuela Heßman, Rudi Alberts, Robert W Williams, Klaus Schughart. BMC Genomics 2012
33
30

A customized and versatile high-density genotyping array for the mouse.
Hyuna Yang, Yueming Ding, Lucie N Hutchins, Jin Szatkiewicz, Timothy A Bell, Beverly J Paigen, Joel H Graber, Fernando Pardo-Manuel de Villena, Gary A Churchill. Nat Methods 2009
185
9

Genome-wide genetic association of complex traits in heterogeneous stock mice.
William Valdar, Leah C Solberg, Dominique Gauguier, Stephanie Burnett, Paul Klenerman, William O Cookson, Martin S Taylor, J Nicholas P Rawlins, Richard Mott, Jonathan Flint. Nat Genet 2006
381
9


Genetic analysis of albuminuria in collaborative cross and multiple mouse intercross populations.
Jill Thaisz, Shirng-Wern Tsaih, Minjie Feng, Vivek M Philip, Yunyu Zhang, Liane Yanas, Susan Sheehan, Lingfei Xu, Darla R Miller, Beverly Paigen,[...]. Am J Physiol Renal Physiol 2012
16
50



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.