A citation-based method for searching scientific literature

Elena V Eremeeva, Pavel V Natashin, Lei Song, Yuguang Zhou, Willem J H van Berkel, Zhi-Jie Liu, Eugene S Vysotski. Chembiochem 2013
Times Cited: 24







List of co-cited articles
163 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The crystal structure of the photoprotein aequorin at 2.3 A resolution.
J F Head, S Inouye, K Teranishi, O Shimomura. Nature 2000
216
91


Crystal structure of obelin after Ca2+-triggered bioluminescence suggests neutral coelenteramide as the primary excited state.
Zhi-Jie Liu, Galina A Stepanyuk, Eugene S Vysotski, John Lee, Svetlana V Markova, Natalia P Malikova, Bi-Cheng Wang. Proc Natl Acad Sci U S A 2006
65
70

Atomic resolution structure of obelin: soaking with calcium enhances electron density of the second oxygen atom substituted at the C2-position of coelenterazine.
Zhi-Jie Liu, Eugene S Vysotski, Lu Deng, John Lee, John Rose, Bi-Cheng Wang. Biochem Biophys Res Commun 2003
46
70

All three Ca2+-binding loops of photoproteins bind calcium ions: the crystal structures of calcium-loaded apo-aequorin and apo-obelin.
Lu Deng, Eugene S Vysotski, Svetlana V Markova, Zhi-Jie Liu, John Lee, John Rose, Bi-Cheng Wang. Protein Sci 2005
66
70

Regeneration of the photoprotein aequorin.
O Shimomura, F H Johnson. Nature 1975
144
70


The light-sensitive photoprotein berovin from the bioluminescent ctenophore Beroe abyssicola: a novel type of Ca(2+) -regulated photoprotein.
Svetlana V Markova, Ludmila P Burakova, Stefan Golz, Natalia P Malikova, Ludmila A Frank, Eugene S Vysotski. FEBS J 2012
39
66

NMR-derived topology of a GFP-photoprotein energy transfer complex.
Maxim S Titushin, Yingang Feng, Galina A Stepanyuk, Yang Li, Svetlana V Markova, Stefan Golz, Bi-Cheng Wang, John Lee, Jinfeng Wang, Eugene S Vysotski,[...]. J Biol Chem 2010
41
66

Bioluminescent and spectroscopic properties of His-Trp-Tyr triad mutants of obelin and aequorin.
Elena V Eremeeva, Svetlana V Markova, Ludmila A Frank, Antonie J W G Visser, Willem J H van Berkel, Eugene S Vysotski. Photochem Photobiol Sci 2013
26
62

Interchange of aequorin and obelin bioluminescence color is determined by substitution of one active site residue of each photoprotein.
Galina A Stepanyuk, Stefan Golz, Svetlana V Markova, Ludmila A Frank, John Lee, Eugene S Vysotski. FEBS Lett 2005
61
58

Role of key residues of obelin in coelenterazine binding and conversion into 2-hydroperoxy adduct.
Elena V Eremeeva, Svetlana V Markova, Willem J H van Berkel, Eugene S Vysotski. J Photochem Photobiol B 2013
23
60

Structure of the light-emitting moiety of aequorin.
O Shimomura, F H Johnson. Biochemistry 1972
77
54


Crystal structure of a Ca2+-discharged photoprotein: implications for mechanisms of the calcium trigger and bioluminescence.
Lu Deng, Svetlana V Markova, Eugene S Vysotski, Zhi-Jie Liu, John Lee, John Rose, Bi-Cheng Wang. J Biol Chem 2004
40
50

Cloning, sequencing, expression and structural investigation of mnemiopsin from Mnemiopsis leidyi: an attempt toward understanding Ca2+-regulated photoproteins.
Mahmoud Reza Aghamaali, Vahab Jafarian, Reyhaneh Sariri, Maryam Molakarimi, Behnam Rasti, Majid Taghdir, Reza Hasan Sajedi, Saman Hosseinkhani. Protein J 2011
32
50


Cloning and expression of the cDNA coding for aequorin, a bioluminescent calcium-binding protein.
D Prasher, R O McCann, M J Cormier. Biochem Biophys Res Commun 1985
155
50


Recombinant obelin: cloning and expression of cDNA purification, and characterization as a calcium indicator.
B A Illarionov, L A Frank, V A Illarionova, V S Bondar, E S Vysotski, J R Blinks. Methods Enzymol 2000
68
45

Bioluminescence in the sea.
Steven H D Haddock, Mark A Moline, James F Case. Ann Rev Mar Sci 2010
291
45

Violet bioluminescence and fast kinetics from W92F obelin: structure-based proposals for the bioluminescence triggering and the identification of the emitting species.
Eugene S Vysotski, Zhi-Jie Liu, Svetlana V Markova, John R Blinks, Lu Deng, Ludmila A Frank, Michelle Herko, Natalia P Malikova, John P Rose, Bi-Cheng Wang,[...]. Biochemistry 2003
49
45

Green-fluorescent protein from the bioluminescent jellyfish Clytia gregaria: cDNA cloning, expression, and characterization of novel recombinant protein.
Svetlana V Markova, Ludmila P Burakova, Ludmila A Frank, Stefan Golz, Kseniya A Korostileva, Eugene S Vysotski. Photochem Photobiol Sci 2010
32
45

The intrinsic fluorescence of apo-obelin and apo-aequorin and use of its quenching to characterize coelenterazine binding.
Elena V Eremeeva, Svetlana V Markova, Adrie H Westphal, Antonie J W G Visser, Willem J H van Berkel, Eugene S Vysotski. FEBS Lett 2009
23
47

Cloning, expression and sequence analysis of cDNA for the Ca(2+)-binding photoprotein, mitrocomin.
T F Fagan, Y Ohmiya, J R Blinks, S Inouye, F I Tsuji. FEBS Lett 1993
49
45

Cloning and sequence analysis of cDNA for the luminescent protein aequorin.
S Inouye, M Noguchi, Y Sakaki, Y Takagi, T Miyata, S Iwanaga, T Miyata, F I Tsuji. Proc Natl Acad Sci U S A 1985
277
45

Characterization of hydromedusan Ca(2+)-regulated photoproteins as a tool for measurement of Ca(2+)concentration.
Natalia P Malikova, Ludmila P Burakova, Svetlana V Markova, Eugene S Vysotski. Anal Bioanal Chem 2014
23
47





Structures of the Ca2+-regulated photoprotein obelin Y138F mutant before and after bioluminescence support the catalytic function of a water molecule in the reaction.
Pavel V Natashin, Wei Ding, Elena V Eremeeva, Svetlana V Markova, John Lee, Eugene S Vysotski, Zhi-Jie Liu. Acta Crystallogr D Biol Crystallogr 2014
22
45

Subcellular calcium measurements in mammalian cells using jellyfish photoprotein aequorin-based probes.
Massimo Bonora, Carlotta Giorgi, Angela Bononi, Saverio Marchi, Simone Patergnani, Alessandro Rimessi, Rosario Rizzuto, Paolo Pinton. Nat Protoc 2013
115
37

Mitrocomin from the jellyfish Mitrocoma cellularia with deleted C-terminal tyrosine reveals a higher bioluminescence activity compared to wild type photoprotein.
Ludmila P Burakova, Pavel V Natashin, Svetlana V Markova, Elena V Eremeeva, Natalia P Malikova, Chongyun Cheng, Zhi-Jie Liu, Eugene S Vysotski. J Photochem Photobiol B 2016
15
60

Preparation and X-ray crystallographic analysis of recombinant obelin crystals diffracting to beyond 1.1 A.
E S Vysotski, Z J Liu, J Rose, B C Wang, J Lee. Acta Crystallogr D Biol Crystallogr 2001
29
33


Evidence for similar biochemical requirements for bioluminescence among the coelenterates.
M J Cormier, K Hori, Y D Karkhanis, J M Anderson, J E Wampler, J G Morin, J W Hastings. J Cell Physiol 1973
62
33


Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes.
Christine E Schnitzler, Kevin Pang, Meghan L Powers, Adam M Reitzel, Joseph F Ryan, David Simmons, Takashi Tada, Morgan Park, Jyoti Gupta, Shelise Y Brooks,[...]. BMC Biol 2012
65
33

Structural basis for the emission of violet bioluminescence from a W92F obelin mutant.
L Deng, E S Vysotski, Z J Liu, S V Markova, N P Malikova, J Lee, J Rose, B C Wang. FEBS Lett 2001
37
33

Coelenterazine-dependent luciferases.
S V Markova, E S Vysotski. Biochemistry (Mosc) 2015
31
33


Sequence comparisons of complementary DNAs encoding aequorin isotypes.
D C Prasher, R O McCann, M Longiaru, M J Cormier. Biochemistry 1987
62
29

Semisynthetic photoprotein reporters for tracking fast Ca(2+) transients.
Natalia P Malikova, Aren J Borgdorff, Eugene S Vysotski. Photochem Photobiol Sci 2015
14
50

Spectral tuning of obelin bioluminescence by mutations of Trp92.
Natalia P Malikova, Galina A Stepanyuk, Ludmila A Frank, Svetlana V Markova, Eugene S Vysotski, John Lee. FEBS Lett 2003
33
25


Spatial structure of the novel light-sensitive photoprotein berovin from the ctenophore Beroe abyssicola in the Ca(2+)-loaded apoprotein conformation state.
Galina A Stepanyuk, Zhi-Jie Liu, Ludmila P Burakova, John Lee, John Rose, Eugene S Vysotski, Bi-Cheng Wang. Biochim Biophys Acta 2013
19
31

Response of aequorin bioluminescence to rapid changes in calcium concentration.
J W Hastings, G Mitchell, P H Mattingly, J R Blinks, M Van Leeuwen. Nature 1969
121
25




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.