A citation-based method for searching scientific literature

Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
Times Cited: 597







List of co-cited articles
734 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
24

Light-sheet functional imaging in fictively behaving zebrafish.
Nikita Vladimirov, Yu Mu, Takashi Kawashima, Davis V Bennett, Chao-Tsung Yang, Loren L Looger, Philipp J Keller, Jeremy Freeman, Misha B Ahrens. Nat Methods 2014
135
18

Optical sectioning deep inside live embryos by selective plane illumination microscopy.
Jan Huisken, Jim Swoger, Filippo Del Bene, Joachim Wittbrodt, Ernst H K Stelzer. Science 2004
17

Brain-wide neuronal dynamics during motor adaptation in zebrafish.
Misha B Ahrens, Jennifer M Li, Michael B Orger, Drew N Robson, Alexander F Schier, Florian Engert, Ruben Portugues. Nature 2012
336
14

Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.
Philipp J Keller, Annette D Schmidt, Joachim Wittbrodt, Ernst H K Stelzer. Science 2008
801
14

Rapid whole brain imaging of neural activity in freely behaving larval zebrafish (Danio rerio).
Lin Cong, Zeguan Wang, Yuming Chai, Wei Hang, Chunfeng Shang, Wenbin Yang, Lu Bai, Jiulin Du, Kai Wang, Quan Wen. Elife 2017
85
15

Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion.
Timothy W Dunn, Yu Mu, Sujatha Narayan, Owen Randlett, Eva A Naumann, Chao-Tsung Yang, Alexander F Schier, Jeremy Freeman, Florian Engert, Misha B Ahrens. Elife 2016
107
13

Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.
Bi-Chang Chen, Wesley R Legant, Kai Wang, Lin Shao, Daniel E Milkie, Michael W Davidson, Chris Janetopoulos, Xufeng S Wu, John A Hammer, Zhe Liu,[...]. Science 2014
791
13

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy.
Robert Prevedel, Young-Gyu Yoon, Maximilian Hoffmann, Nikita Pak, Gordon Wetzstein, Saul Kato, Tina Schrödel, Ramesh Raskar, Manuel Zimmer, Edward S Boyden,[...]. Nat Methods 2014
274
12

Pan-neuronal calcium imaging with cellular resolution in freely swimming zebrafish.
Dal Hyung Kim, Jungsoo Kim, João C Marques, Abhinav Grama, David G C Hildebrand, Wenchao Gu, Jennifer M Li, Drew N Robson. Nat Methods 2017
72
16

Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination.
Thomas A Planchon, Liang Gao, Daniel E Milkie, Michael W Davidson, James A Galbraith, Catherine G Galbraith, Eric Betzig. Nat Methods 2011
482
11

Whole-brain calcium imaging with cellular resolution in freely behaving Caenorhabditis elegans.
Jeffrey P Nguyen, Frederick B Shipley, Ashley N Linder, George S Plummer, Mochi Liu, Sagar U Setru, Joshua W Shaevitz, Andrew M Leifer. Proc Natl Acad Sci U S A 2016
142
11

Whole-brain activity maps reveal stereotyped, distributed networks for visuomotor behavior.
Ruben Portugues, Claudia E Feierstein, Florian Engert, Michael B Orger. Neuron 2014
144
10

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
673
10

Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms.
Matthew B Bouchard, Venkatakaushik Voleti, César S Mendes, Clay Lacefield, Wesley B Grueber, Richard S Mann, Randy M Bruno, Elizabeth M C Hillman. Nat Photonics 2015
214
10


Fast functional imaging of multiple brain regions in intact zebrafish larvae using selective plane illumination microscopy.
Thomas Panier, Sebastián A Romano, Raphaël Olive, Thomas Pietri, Germán Sumbre, Raphaël Candelier, Georges Debrégeas. Front Neural Circuits 2013
115
9


Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
479
9


From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response.
Eva A Naumann, James E Fitzgerald, Timothy W Dunn, Jason Rihel, Haim Sompolinsky, Florian Engert. Cell 2016
91
8

SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function.
Raju Tomer, Matthew Lovett-Barron, Isaac Kauvar, Aaron Andalman, Vanessa M Burns, Sethuraman Sankaran, Logan Grosenick, Michael Broxton, Samuel Yang, Karl Deisseroth. Cell 2015
108
8

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
574
8

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
8

Mapping brain activity at scale with cluster computing.
Jeremy Freeman, Nikita Vladimirov, Takashi Kawashima, Yu Mu, Nicholas J Sofroniew, Davis V Bennett, Joshua Rosen, Chao-Tsung Yang, Loren L Looger, Misha B Ahrens. Nat Methods 2014
132
8

Multiview light-sheet microscope for rapid in toto imaging.
Uros Krzic, Stefan Gunther, Timothy E Saunders, Sebastian J Streichan, Lars Hufnagel. Nat Methods 2012
232
7

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms.
Loïc A Royer, William C Lemon, Raghav K Chhetri, Yinan Wan, Michael Coleman, Eugene W Myers, Philipp J Keller. Nat Biotechnol 2016
97
7

Neuronal Dynamics Regulating Brain and Behavioral State Transitions.
Aaron S Andalman, Vanessa M Burns, Matthew Lovett-Barron, Michael Broxton, Ben Poole, Samuel J Yang, Logan Grosenick, Talia N Lerner, Ritchie Chen, Tyler Benster,[...]. Cell 2019
59
11

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
106
7

Whole-brain functional imaging with two-photon light-sheet microscopy.
Sébastien Wolf, Willy Supatto, Georges Debrégeas, Pierre Mahou, Sergei G Kruglik, Jean-Marc Sintes, Emmanuel Beaurepaire, Raphaël Candelier. Nat Methods 2015
62
11


Real-time volumetric microscopy of in vivo dynamics and large-scale samples with SCAPE 2.0.
Venkatakaushik Voleti, Kripa B Patel, Wenze Li, Citlali Perez Campos, Srinidhi Bharadwaj, Hang Yu, Caitlin Ford, Malte J Casper, Richard Wenwei Yan, Wenxuan Liang,[...]. Nat Methods 2019
50
14


Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy.
Philipp J Keller, Annette D Schmidt, Anthony Santella, Khaled Khairy, Zhirong Bao, Joachim Wittbrodt, Ernst H K Stelzer. Nat Methods 2010
300
7

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
313
7


A dedicated visual pathway for prey detection in larval zebrafish.
Julia L Semmelhack, Joseph C Donovan, Tod R Thiele, Enrico Kuehn, Eva Laurell, Herwig Baier. Elife 2014
91
6

Structure of the Zebrafish Locomotor Repertoire Revealed with Unsupervised Behavioral Clustering.
João C Marques, Simone Lackner, Rita Félix, Michael B Orger. Curr Biol 2018
69
8

Sensorimotor computation underlying phototaxis in zebrafish.
Sébastien Wolf, Alexis M Dubreuil, Tommaso Bertoni, Urs Lucas Böhm, Volker Bormuth, Raphaël Candelier, Sophia Karpenko, David G C Hildebrand, Isaac H Bianco, Rémi Monasson,[...]. Nat Commun 2017
41
14


Neural control and modulation of swimming speed in the larval zebrafish.
Kristen E Severi, Ruben Portugues, João C Marques, Donald M O'Malley, Michael B Orger, Florian Engert. Neuron 2014
94
6

Whole-brain activity mapping onto a zebrafish brain atlas.
Owen Randlett, Caroline L Wee, Eva A Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert,[...]. Nat Methods 2015
181
6

A Brain-wide Circuit Model of Heat-Evoked Swimming Behavior in Larval Zebrafish.
Martin Haesemeyer, Drew N Robson, Jennifer M Li, Alexander F Schier, Florian Engert. Neuron 2018
25
24

Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish.
Xiuye Chen, Yu Mu, Yu Hu, Aaron T Kuan, Maxim Nikitchenko, Owen Randlett, Alex B Chen, Jeffery P Gavornik, Haim Sompolinsky, Florian Engert,[...]. Neuron 2018
38
15

A Cellular-Resolution Atlas of the Larval Zebrafish Brain.
Michael Kunst, Eva Laurell, Nouwar Mokayes, Anna Kramer, Fumi Kubo, António M Fernandes, Dominique Förster, Marco Dal Maschio, Herwig Baier. Neuron 2019
45
13

Real-time visualization of neuronal activity during perception.
Akira Muto, Masamichi Ohkura, Gembu Abe, Junichi Nakai, Koichi Kawakami. Curr Biol 2013
132
6

In vivo three-photon microscopy of subcortical structures within an intact mouse brain.
Nicholas G Horton, Ke Wang, Demirhan Kobat, Catharine G Clark, Frank W Wise, Chris B Schaffer, Chris Xu. Nat Photonics 2013
491
6

Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.
Nikita Vladimirov, Chen Wang, Burkhard Höckendorf, Avinash Pujala, Masashi Tanimoto, Yu Mu, Chao-Tsung Yang, Jason D Wittenbach, Jeremy Freeman, Stephan Preibisch,[...]. Nat Methods 2018
13
46

A platform for brain-wide imaging and reconstruction of individual neurons.
Michael N Economo, Nathan G Clack, Luke D Lavis, Charles R Gerfen, Karel Svoboda, Eugene W Myers, Jayaram Chandrashekar. Elife 2016
175
6

Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms.
Tsung-Li Liu, Srigokul Upadhyayula, Daniel E Milkie, Ved Singh, Kai Wang, Ian A Swinburne, Kishore R Mosaliganti, Zach M Collins, Tom W Hiscock, Jamien Shea,[...]. Science 2018
194
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.