A citation-based method for searching scientific literature

Robert Lowe, Carolina Gemma, Huriya Beyan, Mohammed I Hawa, Alexandra Bazeos, R David Leslie, Alexandre Montpetit, Vardhman K Rakyan, Sreeram V Ramagopalan. Epigenetics 2013
Times Cited: 100







List of co-cited articles
971 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA extracted from saliva for methylation studies of psychiatric traits: evidence tissue specificity and relatedness to brain.
Alicia K Smith, Varun Kilaru, Torsten Klengel, Kristina B Mercer, Bekh Bradley, Karen N Conneely, Kerry J Ressler, Elisabeth B Binder. Am J Med Genet B Neuropsychiatr Genet 2015
178
35

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
25

Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood.
Matthew N Davies, Manuela Volta, Ruth Pidsley, Katie Lunnon, Abhishek Dixit, Simon Lovestone, Cristian Coarfa, R Alan Harris, Aleksandar Milosavljevic, Claire Troakes,[...]. Genome Biol 2012
441
24

Epigenome-wide association studies for common human diseases.
Vardhman K Rakyan, Thomas A Down, David J Balding, Stephan Beck. Nat Rev Genet 2011
730
18

Epigenetic programming by maternal behavior.
Ian C G Weaver, Nadia Cervoni, Frances A Champagne, Ana C D'Alessio, Shakti Sharma, Jonathan R Seckl, Sergiy Dymov, Moshe Szyf, Michael J Meaney. Nat Neurosci 2004
17

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
794
17

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Andrew E Teschendorff, Francesco Marabita, Matthias Lechner, Thomas Bartlett, Jesper Tegner, David Gomez-Cabrero, Stephan Beck. Bioinformatics 2013
717
16

Allele-specific FKBP5 DNA demethylation mediates gene-childhood trauma interactions.
Torsten Klengel, Divya Mehta, Christoph Anacker, Monika Rex-Haffner, Jens C Pruessner, Carmine M Pariante, Thaddeus W W Pace, Kristina B Mercer, Helen S Mayberg, Bekh Bradley,[...]. Nat Neurosci 2013
770
16

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
613
15

Mosaic epigenetic dysregulation of ectodermal cells in autism spectrum disorder.
Esther R Berko, Masako Suzuki, Faygel Beren, Christophe Lemetre, Christine M Alaimo, R Brent Calder, Karen Ballaban-Gil, Batya Gounder, Kaylee Kampf, Jill Kirschen,[...]. PLoS Genet 2014
62
24

From promises to practical strategies in epigenetic epidemiology.
Jonathan Mill, Bastiaan T Heijmans. Nat Rev Genet 2013
202
14

Epigenetic regulation of the glucocorticoid receptor in human brain associates with childhood abuse.
Patrick O McGowan, Aya Sasaki, Ana C D'Alessio, Sergiy Dymov, Benoit Labonté, Moshe Szyf, Gustavo Turecki, Michael J Meaney. Nat Neurosci 2009
14

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
14


Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array.
Magda E Price, Allison M Cotton, Lucia L Lam, Pau Farré, Eldon Emberly, Carolyn J Brown, Wendy P Robinson, Michael S Kobor. Epigenetics Chromatin 2013
293
13


Charting a dynamic DNA methylation landscape of the human genome.
Michael J Ziller, Hongcang Gu, Fabian Müller, Julie Donaghey, Linus T-Y Tsai, Oliver Kohlbacher, Philip L De Jager, Evan D Rosen, David A Bennett, Bradley E Bernstein,[...]. Nature 2013
751
12

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
953
12

High density DNA methylation array with single CpG site resolution.
Marina Bibikova, Bret Barnes, Chan Tsan, Vincent Ho, Brandy Klotzle, Jennie M Le, David Delano, Lu Zhang, Gary P Schroth, Kevin L Gunderson,[...]. Genomics 2011
979
12

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
Yun Liu, Martin J Aryee, Leonid Padyukov, M Daniele Fallin, Espen Hesselberg, Arni Runarsson, Lovisa Reinius, Nathalie Acevedo, Margaret Taub, Marcus Ronninger,[...]. Nat Biotechnol 2013
554
11


Epigenetic vestiges of early developmental adversity: childhood stress exposure and DNA methylation in adolescence.
Marilyn J Essex, W Thomas Boyce, Clyde Hertzman, Lucia L Lam, Jeffrey M Armstrong, Sarah M A Neumann, Michael S Kobor. Child Dev 2013
224
11

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
10

Factors underlying variable DNA methylation in a human community cohort.
Lucia L Lam, Eldon Emberly, Hunter B Fraser, Sarah M Neumann, Edith Chen, Gregory E Miller, Michael S Kobor. Proc Natl Acad Sci U S A 2012
255
10

Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
10

A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
473
10

Commentary: The seven plagues of epigenetic epidemiology.
Bastiaan T Heijmans, Jonathan Mill. Int J Epidemiol 2012
130
10

Child abuse, depression, and methylation in genes involved with stress, neural plasticity, and brain circuitry.
Natalie Weder, Huiping Zhang, Kevin Jensen, Bao Zhu Yang, Arthur Simen, Andrea Jackowski, Deborah Lipschitz, Heather Douglas-Palumberi, Margrat Ge, Francheska Perepletchikova,[...]. J Am Acad Child Adolesc Psychiatry 2014
170
10

Common DNA methylation alterations in multiple brain regions in autism.
C Ladd-Acosta, K D Hansen, E Briem, M D Fallin, W E Kaufmann, A P Feinberg. Mol Psychiatry 2014
170
10

Epigenetic differences arise during the lifetime of monozygotic twins.
Mario F Fraga, Esteban Ballestar, Maria F Paz, Santiago Ropero, Fernando Setien, Maria L Ballestar, Damia Heine-Suñer, Juan C Cigudosa, Miguel Urioste, Javier Benitez,[...]. Proc Natl Acad Sci U S A 2005
10

Persistent epigenetic differences associated with prenatal exposure to famine in humans.
Bastiaan T Heijmans, Elmar W Tobi, Aryeh D Stein, Hein Putter, Gerard J Blauw, Ezra S Susser, P Eline Slagboom, L H Lumey. Proc Natl Acad Sci U S A 2008
10

Population-specificity of human DNA methylation.
Hunter B Fraser, Lucia L Lam, Sarah M Neumann, Michael S Kobor. Genome Biol 2012
163
10

Prenatal exposure to maternal depression, neonatal methylation of human glucocorticoid receptor gene (NR3C1) and infant cortisol stress responses.
Tim F Oberlander, Joanne Weinberg, Michael Papsdorf, Ruth Grunau, Shaila Misri, Angela M Devlin. Epigenetics 2008
822
10

Perceptions of epigenetics.
Adrian Bird. Nature 2007
10

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.
Jordana T Bell, Athma A Pai, Joseph K Pickrell, Daniel J Gaffney, Roger Pique-Regi, Jacob F Degner, Yoav Gilad, Jonathan K Pritchard. Genome Biol 2011
561
10

The effect of genotype and in utero environment on interindividual variation in neonate DNA methylomes.
Ai Ling Teh, Hong Pan, Li Chen, Mei-Lyn Ong, Shaillay Dogra, Johnny Wong, Julia L MacIsaac, Sarah M Mah, Lisa M McEwen, Seang-Mei Saw,[...]. Genome Res 2014
181
10

Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis.
Devin C Koestler, Brock Christensen, Margaret R Karagas, Carmen J Marsit, Scott M Langevin, Karl T Kelsey, John K Wiencke, E Andres Houseman. Epigenetics 2013
146
9

Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array.
Roderick C Slieker, Steffan D Bos, Jelle J Goeman, Judith Vmg Bovée, Rudolf P Talens, Ruud van der Breggen, H Eka D Suchiman, Eric-Wubbo Lameijer, Hein Putter, Erik B van den Akker,[...]. Epigenetics Chromatin 2013
150
9

Dynamic changes in DNA methylation of stress-associated genes (OXTR, BDNF ) after acute psychosocial stress.
E Unternaehrer, P Luers, J Mill, E Dempster, A H Meyer, S Staehli, R Lieb, D H Hellhammer, G Meinlschmidt. Transl Psychiatry 2012
140
9

Passive and active DNA methylation and the interplay with genetic variation in gene regulation.
Maria Gutierrez-Arcelus, Tuuli Lappalainen, Stephen B Montgomery, Alfonso Buil, Halit Ongen, Alisa Yurovsky, Julien Bryois, Thomas Giger, Luciana Romano, Alexandra Planchon,[...]. Elife 2013
250
9

Aging effects on DNA methylation modules in human brain and blood tissue.
Steve Horvath, Yafeng Zhang, Peter Langfelder, René S Kahn, Marco P M Boks, Kristel van Eijk, Leonard H van den Berg, Roel A Ophoff. Genome Biol 2012
345
9

Longitudinal, genome-scale analysis of DNA methylation in twins from birth to 18 months of age reveals rapid epigenetic change in early life and pair-specific effects of discordance.
David Martino, Yuk Jin Loke, Lavinia Gordon, Miina Ollikainen, Mark N Cruickshank, Richard Saffery, Jeffrey M Craig. Genome Biol 2013
121
9

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
9

Small-Magnitude Effect Sizes in Epigenetic End Points are Important in Children's Environmental Health Studies: The Children's Environmental Health and Disease Prevention Research Center's Epigenetics Working Group.
Carrie V Breton, Carmen J Marsit, Elaine Faustman, Kari Nadeau, Jaclyn M Goodrich, Dana C Dolinoy, Julie Herbstman, Nina Holland, Janine M LaSalle, Rebecca Schmidt,[...]. Environ Health Perspect 2017
127
9

Epigenome-wide scans identify differentially methylated regions for age and age-related phenotypes in a healthy ageing population.
Jordana T Bell, Pei-Chien Tsai, Tsun-Po Yang, Ruth Pidsley, James Nisbet, Daniel Glass, Massimo Mangino, Guangju Zhai, Feng Zhang, Ana Valdes,[...]. PLoS Genet 2012
422
8

The role of DNA methylation in stress-related psychiatric disorders.
Torsten Klengel, Julius Pape, Elisabeth B Binder, Divya Mehta. Neuropharmacology 2014
151
8

Differential patterns of whole-genome DNA methylation in institutionalized children and children raised by their biological parents.
Oksana Yu Naumova, Maria Lee, Roman Koposov, Moshe Szyf, Mary Dozier, Elena L Grigorenko. Dev Psychopathol 2012
124
8


Global epigenomic reconfiguration during mammalian brain development.
Ryan Lister, Eran A Mukamel, Joseph R Nery, Mark Urich, Clare A Puddifoot, Nicholas D Johnson, Jacinta Lucero, Yun Huang, Andrew J Dwork, Matthew D Schultz,[...]. Science 2013
8

Increased methylation of glucocorticoid receptor gene (NR3C1) in adults with a history of childhood maltreatment: a link with the severity and type of trauma.
N Perroud, A Paoloni-Giacobino, P Prada, E Olié, A Salzmann, R Nicastro, S Guillaume, D Mouthon, C Stouder, K Dieben,[...]. Transl Psychiatry 2011
258
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.