A citation-based method for searching scientific literature

Tingwei Quan, Ting Zheng, Zhongqing Yang, Wenxiang Ding, Shiwei Li, Jing Li, Hang Zhou, Qingming Luo, Hui Gong, Shaoqun Zeng. Sci Rep 2013
Times Cited: 27







List of co-cited articles
199 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution.
Hui Gong, Shaoqun Zeng, Cheng Yan, Xiaohua Lv, Zhongqin Yang, Tonghui Xu, Zhao Feng, Wenxiang Ding, Xiaoli Qi, Anan Li,[...]. Neuroimage 2013
106
62

Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain.
Anan Li, Hui Gong, Bin Zhang, Qingdi Wang, Cheng Yan, Jingpeng Wu, Qian Liu, Shaoqun Zeng, Qingming Luo. Science 2010
237
59

Serial two-photon tomography for automated ex vivo mouse brain imaging.
Timothy Ragan, Lolahon R Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H Sebastian Seung, Pavel Osten. Nat Methods 2012
318
55

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain.
L Silvestri, A Bria, L Sacconi, G Iannello, F S Pavone. Opt Express 2012
121
44

Visualization of brain circuits using two-photon fluorescence micro-optical sectioning tomography.
Ting Zheng, Zhongqing Yang, Anan Li, Xiaohua Lv, Zhenqiao Zhou, Xiaojun Wang, Xiaoli Qi, Shiwei Li, Qingming Luo, Hui Gong,[...]. Opt Express 2013
41
44

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
685
37

Mapping brain circuitry with a light microscope.
Pavel Osten, Troy W Margrie. Nat Methods 2013
135
37

Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
37

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level.
Hui Gong, Dongli Xu, Jing Yuan, Xiangning Li, Congdi Guo, Jie Peng, Yuxin Li, Lindsay A Schwarz, Anan Li, Bihe Hu,[...]. Nat Commun 2016
111
33


Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi,[...]. Cell 2014
633
29

CLARITY for mapping the nervous system.
Kwanghun Chung, Karl Deisseroth. Nat Methods 2013
396
29

NeuroGPS-Tree: automatic reconstruction of large-scale neuronal populations with dense neurites.
Tingwei Quan, Hang Zhou, Jing Li, Shiwei Li, Anan Li, Yuxin Li, Xiaohua Lv, Qingming Luo, Hui Gong, Shaoqun Zeng. Nat Methods 2016
51
29

Genetic dissection of neural circuits.
Liqun Luo, Edward M Callaway, Karel Svoboda. Neuron 2008
513
25

Imaging neuronal subsets in transgenic mice expressing multiple spectral variants of GFP.
G Feng, R H Mellor, M Bernstein, C Keller-Peck, Q T Nguyen, M Wallace, J M Nerbonne, J W Lichtman, J R Sanes. Neuron 2000
25

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets.
Hanchuan Peng, Zongcai Ruan, Fuhui Long, Julie H Simpson, Eugene W Myers. Nat Biotechnol 2010
359
25

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
25

3D BrainCV: simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution.
Jingpeng Wu, Yong He, Zhongqin Yang, Congdi Guo, Qingming Luo, Wei Zhou, Shangbin Chen, Anan Li, Benyi Xiong, Tao Jiang,[...]. Neuroimage 2014
57
25

Modified Golgi-Cox method for micrometer scale sectioning of the whole mouse brain.
Bin Zhang, Anan Li, Zhongqin Yang, Jingpeng Wu, Qingming Luo, Hui Gong. J Neurosci Methods 2011
27
22

Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images.
Paolo Frasconi, Ludovico Silvestri, Paolo Soda, Roberto Cortini, Francesco S Pavone, Giulio Iannello. Bioinformatics 2014
18
33

Chemical reactivation of quenched fluorescent protein molecules enables resin-embedded fluorescence microimaging.
Hanqing Xiong, Zhenqiao Zhou, Mingqiang Zhu, Xiaohua Lv, Anan Li, Shiwei Li, Longhui Li, Tao Yang, Siming Wang, Zhongqin Yang,[...]. Nat Commun 2014
52
22

A broadly applicable 3-D neuron tracing method based on open-curve snake.
Yu Wang, Arunachalam Narayanaswamy, Chia-Ling Tsai, Badrinath Roysam. Neuroinformatics 2011
87
22


A platform for brain-wide imaging and reconstruction of individual neurons.
Michael N Economo, Nathan G Clack, Luke D Lavis, Charles R Gerfen, Karel Svoboda, Eugene W Myers, Jayaram Chandrashekar. Elife 2016
183
22

Computational methods and challenges for large-scale circuit mapping.
Moritz Helmstaedter, Partha P Mitra. Curr Opin Neurobiol 2012
45
18

Digital reconstruction of the cell body in dense neural circuits using a spherical-coordinated variational model.
Tingwei Quan, Jing Li, Hang Zhou, Shiwei Li, Ting Zheng, Zhongqing Yang, Qingming Luo, Hui Gong, Shaoqun Zeng. Sci Rep 2014
8
62

Three-dimensional imaging of solvent-cleared organs using 3DISCO.
Ali Ertürk, Klaus Becker, Nina Jährling, Christoph P Mauch, Caroline D Hojer, Jackson G Egen, Farida Hellal, Frank Bradke, Morgan Sheng, Hans-Ulrich Dodt. Nat Protoc 2012
516
18

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
650
18

Neural networks of the mouse neocortex.
Brian Zingg, Houri Hintiryan, Lin Gou, Monica Y Song, Maxwell Bay, Michael S Bienkowski, Nicholas N Foster, Seita Yamashita, Ian Bowman, Arthur W Toga,[...]. Cell 2014
361
18

Single-cell phenotyping within transparent intact tissue through whole-body clearing.
Bin Yang, Jennifer B Treweek, Rajan P Kulkarni, Benjamin E Deverman, Chun-Kan Chen, Eric Lubeck, Sheel Shah, Long Cai, Viviana Gradinaru. Cell 2014
521
18

A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
993
18

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.
Hiroshi Hama, Hiroshi Kurokawa, Hiroyuki Kawano, Ryoko Ando, Tomomi Shimogori, Hisayori Noda, Kiyoko Fukami, Asako Sakaue-Sawano, Atsushi Miyawaki. Nat Neurosci 2011
719
18


The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions.
Kerry M Brown, Germán Barrionuevo, Alison J Canty, Vincenzo De Paola, Judith A Hirsch, Gregory S X E Jefferis, Ju Lu, Marjolein Snippe, Izumi Sugihara, Giorgio A Ascoli. Neuroinformatics 2011
64
18

Neuron tracing in perspective.
Erik Meijering. Cytometry A 2010
185
18

Development of a plastic embedding method for large-volume and fluorescent-protein-expressing tissues.
Zhongqin Yang, Bihe Hu, Yuhui Zhang, Qingming Luo, Hui Gong. PLoS One 2013
29
18

BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images.
Hanchuan Peng, Michael Hawrylycz, Jane Roskams, Sean Hill, Nelson Spruston, Erik Meijering, Giorgio A Ascoli. Neuron 2015
98
18

High-Speed and Scalable Whole-Brain Imaging in Rodents and Primates.
Kaoru Seiriki, Atsushi Kasai, Takeshi Hashimoto, Wiebke Schulze, Misaki Niu, Shun Yamaguchi, Takanobu Nakazawa, Ken-Ichi Inoue, Shiori Uezono, Masahiko Takada,[...]. Neuron 2017
45
18



New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales.
S L Wearne, A Rodriguez, D B Ehlenberger, A B Rocher, S C Henderson, P R Hof. Neuroscience 2005
225
14

Improved automatic detection and segmentation of cell nuclei in histopathology images.
Yousef Al-Kofahi, Wiem Lassoued, William Lee, Badrinath Roysam. IEEE Trans Biomed Eng 2010
251
14

3D segmentations of neuronal nuclei from confocal microscope image stacks.
Antonio Latorre, Lidia Alonso-Nanclares, Santiago Muelas, José-María Peña, Javier Defelipe. Front Neuroanat 2013
11
36

Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system.
Jean Livet, Tamily A Weissman, Hyuno Kang, Ryan W Draft, Ju Lu, Robyn A Bennis, Joshua R Sanes, Jeff W Lichtman. Nature 2007
14


A whole-brain atlas of inputs to serotonergic neurons of the dorsal and median raphe nuclei.
Iskra Pollak Dorocic, Daniel Fürth, Yang Xuan, Yvonne Johansson, Laura Pozzi, Gilad Silberberg, Marie Carlén, Konstantinos Meletis. Neuron 2014
221
14

Advanced CLARITY for rapid and high-resolution imaging of intact tissues.
Raju Tomer, Li Ye, Brian Hsueh, Karl Deisseroth. Nat Protoc 2014
463
14

Correlations of neuronal and microvascular densities in murine cortex revealed by direct counting and colocalization of nuclei and vessels.
Philbert S Tsai, John P Kaufhold, Pablo Blinder, Beth Friedman, Patrick J Drew, Harvey J Karten, Patrick D Lyden, David Kleinfeld. J Neurosci 2009
311
14

Genetic approaches to neural circuits in the mouse.
Z Josh Huang, Hongkui Zeng. Annu Rev Neurosci 2013
123
14

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.