A citation-based method for searching scientific literature

Catharina Steentoft, Sergey Y Vakhrushev, Hiren J Joshi, Yun Kong, Malene B Vester-Christensen, Katrine T-B G Schjoldager, Kirstine Lavrsen, Sally Dabelsteen, Nis B Pedersen, Lara Marcos-Silva, Ramneek Gupta, Eric Paul Bennett, Ulla Mandel, Søren Brunak, Hans H Wandall, Steven B Levery, Henrik Clausen. EMBO J 2013
Times Cited: 771







List of co-cited articles
645 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mining the O-glycoproteome using zinc-finger nuclease-glycoengineered SimpleCell lines.
Catharina Steentoft, Sergey Y Vakhrushev, Malene B Vester-Christensen, Katrine T-B G Schjoldager, Yun Kong, Eric Paul Bennett, Ulla Mandel, Hans Wandall, Steven B Levery, Henrik Clausen. Nat Methods 2011
248
15


Glycosylation in cancer: mechanisms and clinical implications.
Salomé S Pinho, Celso A Reis. Nat Rev Cancer 2015
12

Global view of human protein glycosylation pathways and functions.
Katrine T Schjoldager, Yoshiki Narimatsu, Hiren J Joshi, Henrik Clausen. Nat Rev Mol Cell Biol 2020
126
12

Control of mucin-type O-glycosylation: a classification of the polypeptide GalNAc-transferase gene family.
Eric P Bennett, Ulla Mandel, Henrik Clausen, Thomas A Gerken, Timothy A Fritz, Lawrence A Tabak. Glycobiology 2012
474
11

Biological roles of glycans.
Ajit Varki. Glycobiology 2017
894
10

Glycosylation in health and disease.
Colin Reily, Tyler J Stewart, Matthew B Renfrow, Jan Novak. Nat Rev Nephrol 2019
402
10


Optimal Dissociation Methods Differ for N- and O-Glycopeptides.
Nicholas M Riley, Stacy A Malaker, Marc D Driessen, Carolyn R Bertozzi. J Proteome Res 2020
55
16

Glyco-DIA: a method for quantitative O-glycoproteomics with in silico-boosted glycopeptide libraries.
Zilu Ye, Yang Mao, Henrik Clausen, Sergey Y Vakhrushev. Nat Methods 2019
47
19

The mucin-selective protease StcE enables molecular and functional analysis of human cancer-associated mucins.
Stacy A Malaker, Kayvon Pedram, Michael J Ferracane, Barbara A Bensing, Venkatesh Krishnan, Christian Pett, Jin Yu, Elliot C Woods, Jessica R Kramer, Ulrika Westerlind,[...]. Proc Natl Acad Sci U S A 2019
87
10

SignalP 5.0 improves signal peptide predictions using deep neural networks.
José Juan Almagro Armenteros, Konstantinos D Tsirigos, Casper Kaae Sønderby, Thomas Nordahl Petersen, Ole Winther, Søren Brunak, Gunnar von Heijne, Henrik Nielsen. Nat Biotechnol 2019
9

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
8

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
8

Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).
Weiming Yang, Minghui Ao, Yingwei Hu, Qing Kay Li, Hui Zhang. Mol Syst Biol 2018
63
12


Byonic: advanced peptide and protein identification software.
Marshall Bern, Yong J Kil, Christopher Becker. Curr Protoc Bioinformatics 2012
308
7

Bump-and-Hole Engineering Identifies Specific Substrates of Glycosyltransferases in Living Cells.
Benjamin Schumann, Stacy Alyse Malaker, Simon Peter Wisnovsky, Marjoke Froukje Debets, Anthony John Agbay, Daniel Fernandez, Lauren Jan Sarbo Wagner, Liang Lin, Zhen Li, Junwon Choi,[...]. Mol Cell 2020
33
21



Isotope-targeted glycoproteomics (IsoTaG): a mass-independent platform for intact N- and O-glycopeptide discovery and analysis.
Christina M Woo, Anthony T Iavarone, David R Spiciarich, Krishnan K Palaniappan, Carolyn R Bertozzi. Nat Methods 2015
162
7

Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints.
Dorota F Zielinska, Florian Gnad, Jacek R Wiśniewski, Matthias Mann. Cell 2010
633
7

Vertebrate protein glycosylation: diversity, synthesis and function.
Kelley W Moremen, Michael Tiemeyer, Alison V Nairn. Nat Rev Mol Cell Biol 2012
933
7

The Phyre2 web portal for protein modeling, prediction and analysis.
Lawrence A Kelley, Stefans Mezulis, Christopher M Yates, Mark N Wass, Michael J E Sternberg. Nat Protoc 2015
6

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence.
Nikolaj Blom, Thomas Sicheritz-Pontén, Ramneek Gupta, Steen Gammeltoft, Søren Brunak. Proteomics 2004
6

Analysis of Mammalian O-Glycopeptides-We Have Made a Good Start, but There is a Long Way to Go.
Zsuzsanna Darula, Katalin F Medzihradszky. Mol Cell Proteomics 2018
44
13

Engineering Orthogonal Polypeptide GalNAc-Transferase and UDP-Sugar Pairs.
Junwon Choi, Lauren J S Wagner, Suzanne B P E Timmermans, Stacy A Malaker, Benjamin Schumann, Melissa A Gray, Marjoke F Debets, Megumi Takashima, Jase Gehring, Carolyn R Bertozzi. J Am Chem Soc 2019
24
25

Recent advances in glycoinformatic platforms for glycomics and glycoproteomics.
Jodie L Abrahams, Ghazaleh Taherzadeh, Gabor Jarvas, Andras Guttman, Yaoqi Zhou, Matthew P Campbell. Curr Opin Struct Biol 2020
34
17

Advances in mass spectrometry-based glycoproteomics.
Aiying Yu, Jingfu Zhao, Wenjing Peng, Alireza Banazadeh, Seth D Williamson, Mona Goli, Yifan Huang, Yehia Mechref. Electrophoresis 2018
47
12

An enzymatic toolkit for selective proteolysis, detection, and visualization of mucin-domain glycoproteins.
D Judy Shon, Stacy A Malaker, Kayvon Pedram, Emily Yang, Venkatesh Krishnan, Oliver Dorigo, Carolyn R Bertozzi. Proc Natl Acad Sci U S A 2020
19
31

Immature truncated O-glycophenotype of cancer directly induces oncogenic features.
Prakash Radhakrishnan, Sally Dabelsteen, Frey Brus Madsen, Chiara Francavilla, Katharina L Kopp, Catharina Steentoft, Sergey Y Vakhrushev, Jesper V Olsen, Lars Hansen, Eric P Bennett,[...]. Proc Natl Acad Sci U S A 2014
172
6

Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.
Diana Campos, Daniela Freitas, Joana Gomes, Ana Magalhães, Catharina Steentoft, Catarina Gomes, Malene B Vester-Christensen, José Alexandre Ferreira, Luis P Afonso, Lúcio L Santos,[...]. Mol Cell Proteomics 2015
67
8

Advances in mass spectrometry driven O-glycoproteomics.
Steven B Levery, Catharina Steentoft, Adnan Halim, Yoshiki Narimatsu, Henrik Clausen, Sergey Y Vakhrushev. Biochim Biophys Acta 2015
85
7

An Atlas of Human Glycosylation Pathways Enables Display of the Human Glycome by Gene Engineered Cells.
Yoshiki Narimatsu, Hiren J Joshi, Rebecca Nason, Julie Van Coillie, Richard Karlsson, Lingbo Sun, Zilu Ye, Yen-Hsi Chen, Katrine T Schjoldager, Catharina Steentoft,[...]. Mol Cell 2019
93
6

Mining the O-mannose glycoproteome reveals cadherins as major O-mannosylated glycoproteins.
Malene B Vester-Christensen, Adnan Halim, Hiren Jitendra Joshi, Catharina Steentoft, Eric P Bennett, Steven B Levery, Sergey Y Vakhrushev, Henrik Clausen. Proc Natl Acad Sci U S A 2013
108
6

Symbol Nomenclature for Graphical Representations of Glycans.
Ajit Varki, Richard D Cummings, Markus Aebi, Nicole H Packer, Peter H Seeberger, Jeffrey D Esko, Pamela Stanley, Gerald Hart, Alan Darvill, Taroh Kinoshita,[...]. Glycobiology 2015
512
6

Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses.
L Renee Ruhaak, Gege Xu, Qiongyu Li, Elisha Goonatilleke, Carlito B Lebrilla. Chem Rev 2018
153
5

Predicting Secretory Proteins with SignalP.
Henrik Nielsen. Methods Mol Biol 2017
430
5

Deconstruction of O-glycosylation--GalNAc-T isoforms direct distinct subsets of the O-glycoproteome.
Katrine T Schjoldager, Hiren J Joshi, Yun Kong, Christoffer K Goth, Sarah Louise King, Hans H Wandall, Eric P Bennett, Sergey Y Vakhrushev, Henrik Clausen. EMBO Rep 2015
74
6

Loss of Function of GALNT2 Lowers High-Density Lipoproteins in Humans, Nonhuman Primates, and Rodents.
Sumeet A Khetarpal, Katrine T Schjoldager, Christina Christoffersen, Avanthi Raghavan, Andrew C Edmondson, Heiko M Reutter, Bouhouche Ahmed, Reda Ouazzani, Gina M Peloso, Cecilia Vitali,[...]. Cell Metab 2016
78
6

Metabolic cross-talk allows labeling of O-linked beta-N-acetylglucosamine-modified proteins via the N-acetylgalactosamine salvage pathway.
Michael Boyce, Isaac S Carrico, Anjali S Ganguli, Seok-Ho Yu, Matthew J Hangauer, Sarah C Hubbard, Jennifer J Kohler, Carolyn R Bertozzi. Proc Natl Acad Sci U S A 2011
194
5

Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.
Nicholas M Riley, Alexander S Hebert, Michael S Westphall, Joshua J Coon. Nat Commun 2019
98
5

De novo expression of human polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) in colon adenocarcinoma inhibits the differentiation of colonic epithelium.
Kirstine Lavrsen, Sally Dabelsteen, Sergey Y Vakhrushev, Asha M R Levann, Amalie Dahl Haue, August Dylander, Ulla Mandel, Lars Hansen, Morten Frödin, Eric P Bennett,[...]. J Biol Chem 2018
44
11

Glycoproteomics: A Balance between High-Throughput and In-Depth Analysis.
Yang Yang, Vojtech Franc, Albert J R Heck. Trends Biotechnol 2017
79
6

O-glycan initiation directs distinct biological pathways and controls epithelial differentiation.
Ieva Bagdonaite, Emil Mh Pallesen, Zilu Ye, Sergey Y Vakhrushev, Irina N Marinova, Mathias I Nielsen, Signe H Kramer, Stine F Pedersen, Hiren J Joshi, Eric P Bennett,[...]. EMBO Rep 2020
21
23


Mucin-type O-glycosylation during development.
Duy T Tran, Kelly G Ten Hagen. J Biol Chem 2013
161
5

Exploring Regulation of Protein O-Glycosylation in Isogenic Human HEK293 Cells by Differential O-Glycoproteomics.
Yoshiki Narimatsu, Hiren J Joshi, Katrine T Schjoldager, John Hintze, Adnan Halim, Catharina Steentoft, Rebecca Nason, Ulla Mandel, Eric P Bennett, Henrik Clausen,[...]. Mol Cell Proteomics 2019
25
20

Enhanced mass spectrometric mapping of the human GalNAc-type O-glycoproteome with SimpleCells.
Sergey Y Vakhrushev, Catharina Steentoft, Malene B Vester-Christensen, Eric P Bennett, Henrik Clausen, Steven B Levery. Mol Cell Proteomics 2013
79
6

Direct quality control of glycoengineered erythropoietin variants.
Tomislav Čaval, Weihua Tian, Zhang Yang, Henrik Clausen, Albert J R Heck. Nat Commun 2018
39
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.