A citation-based method for searching scientific literature

Fan Zhang, Patrick Scheerer, Inga Oberpichler, Tilman Lamparter, Norbert Krauß. Proc Natl Acad Sci U S A 2013
Times Cited: 64







List of co-cited articles
739 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The cryptochromes: blue light photoreceptors in plants and animals.
Inês Chaves, Richard Pokorny, Martin Byrdin, Nathalie Hoang, Thorsten Ritz, Klaus Brettel, Lars-Oliver Essen, Gijsbertus T J van der Horst, Alfred Batschauer, Margaret Ahmad. Annu Rev Plant Biol 2011
505
62

CryB from Rhodobacter sphaeroides: a unique class of cryptochromes with new cofactors.
Yann Geisselbrecht, Sebastian Frühwirth, Claudia Schroeder, Antonio J Pierik, Gabriele Klug, Lars-Oliver Essen. EMBO Rep 2012
68
56

A photolyase-like protein from Agrobacterium tumefaciens with an iron-sulfur cluster.
Inga Oberpichler, Antonio J Pierik, Janine Wesslowski, Richard Pokorny, Ran Rosen, Michal Vugman, Fan Zhang, Olivia Neubauer, Eliora Z Ron, Alfred Batschauer,[...]. PLoS One 2011
46
71


Crystal structure of DNA photolyase from Escherichia coli.
H W Park, S T Kim, A Sancar, J Deisenhofer. Science 1995
399
37

The class III cyclobutane pyrimidine dimer photolyase structure reveals a new antenna chromophore binding site and alternative photoreduction pathways.
Patrick Scheerer, Fan Zhang, Jacqueline Kalms, David von Stetten, Norbert Krauß, Inga Oberpichler, Tilman Lamparter. J Biol Chem 2015
39
61

Crystal structure and mechanism of a DNA (6-4) photolyase.
Melanie J Maul, Thomas R M Barends, Andreas F Glas, Max J Cryle, Tatiana Domratcheva, Sabine Schneider, Ilme Schlichting, Thomas Carell. Angew Chem Int Ed Engl 2008
140
34

Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome.
Richard Pokorny, Tobias Klar, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Proc Natl Acad Sci U S A 2008
127
32

Dynamics and mechanism of repair of ultraviolet-induced (6-4) photoproduct by photolyase.
Jiang Li, Zheyun Liu, Chuang Tan, Xunmin Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. Nature 2010
140
31

Identification of a new cryptochrome class. Structure, function, and evolution.
Ronald Brudler, Kenichi Hitomi, Hiromi Daiyasu, Hiroyuki Toh, Ken-ichi Kucho, Masahiro Ishiura, Minoru Kanehisa, Victoria A Roberts, Takeshi Todo, John A Tainer,[...]. Mol Cell 2003
229
29

Crystal structures of an archaeal class II DNA photolyase and its complex with UV-damaged duplex DNA.
Stephan Kiontke, Yann Geisselbrecht, Richard Pokorny, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. EMBO J 2011
67
26

Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity.
Sacha Coesel, Manuela Mangogna, Tomoko Ishikawa, Marc Heijde, Alessandra Rogato, Giovanni Finazzi, Takeshi Todo, Chris Bowler, Angela Falciatore. EMBO Rep 2009
124
26

Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes.
Kenichi Hitomi, Luciano DiTacchio, Andrew S Arvai, Junpei Yamamoto, Sang-Tae Kim, Takeshi Todo, John A Tainer, Shigenori Iwai, Satchidananda Panda, Elizabeth D Getzoff. Proc Natl Acad Sci U S A 2009
93
26

Purification and characterization of a type III photolyase from Caulobacter crescentus.
Nuri Oztürk, Ya-Ting Kao, Christopher P Selby, I Halil Kavakli, Carrie L Partch, Dongping Zhong, Aziz Sancar. Biochemistry 2008
40
40

Repair of the (6-4) photoproduct by DNA photolyase requires two photons.
Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Pascal Plaza, Klaus Brettel. Angew Chem Int Ed Engl 2013
40
37

Dynamics and mechanism of cyclobutane pyrimidine dimer repair by DNA photolyase.
Zheyun Liu, Chuang Tan, Xunmin Guo, Ya-Ting Kao, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2011
112
23


Key Amino Acids in the Bacterial (6-4) Photolyase PhrB from Agrobacterium fabrum.
Dominik Graf, Janine Wesslowski, Hongju Ma, Patrick Scheerer, Norbert Krauß, Inga Oberpichler, Fan Zhang, Tilman Lamparter. PLoS One 2015
22
68

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair.
Alexandra Mees, Tobias Klar, Petra Gnau, Ulrich Hennecke, Andre P M Eker, Thomas Carell, Lars-Oliver Essen. Science 2004
271
21

The archaeal cofactor F0 is a light-harvesting antenna chromophore in eukaryotes.
Andreas F Glas, Melanie J Maul, Max Cryle, Thomas R M Barends, Sabine Schneider, Emine Kaya, Ilme Schlichting, Thomas Carell. Proc Natl Acad Sci U S A 2009
49
28

Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes.
Marc Heijde, Gérald Zabulon, Florence Corellou, Tomoko Ishikawa, Johanna Brazard, Anwar Usman, Frédéric Sanchez, Pascal Plaza, Monique Martin, Angela Falciatore,[...]. Plant Cell Environ 2010
90
21

Structural and evolutionary aspects of antenna chromophore usage by class II photolyases.
Stephan Kiontke, Petra Gnau, Reinhard Haselsberger, Alfred Batschauer, Lars-Oliver Essen. J Biol Chem 2014
33
42

Reaction mechanisms of DNA photolyase.
Klaus Brettel, Martin Byrdin. Curr Opin Struct Biol 2010
113
20

Crystal structure of archaeal photolyase from Sulfolobus tokodaii with two FAD molecules: implication of a novel light-harvesting cofactor.
Masahiro Fujihashi, Nobutaka Numoto, Yukiko Kobayashi, Akira Mizushima, Masanari Tsujimura, Akira Nakamura, Yutaka Kawarabayasi, Kunio Miki. J Mol Biol 2007
56
23

A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts.
T Todo, H Takemori, H Ryo, M Ihara, T Matsunaga, O Nikaido, K Sato, T Nomura. Nature 1993
225
20



Discovery and functional analysis of a 4th electron-transferring tryptophan conserved exclusively in animal cryptochromes and (6-4) photolyases.
Pavel Müller, Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Klaus Brettel. Chem Commun (Camb) 2015
74
18


Intraprotein radical transfer during photoactivation of DNA photolyase.
C Aubert, M H Vos, P Mathis, A P Eker, K Brettel. Nature 2000
320
17

Structural biology of DNA photolyases and cryptochromes.
Markus Müller, Thomas Carell. Curr Opin Struct Biol 2009
88
17

Role of two histidines in the (6-4) photolyase reaction.
K Hitomi, H Nakamura, S T Kim, T Mizukoshi, T Ishikawa, S Iwai, T Todo. J Biol Chem 2001
97
17

More than a repair enzyme: Aspergillus nidulans photolyase-like CryA is a regulator of sexual development.
Ozgür Bayram, Christoph Biesemann, Sven Krappmann, Paul Galland, Gerhard H Braus. Mol Biol Cell 2008
94
17

Identification of cryptochrome DASH from vertebrates.
Hiromi Daiyasu, Tomoko Ishikawa, Kei-ichi Kuma, Shigenori Iwai, Takeshi Todo, Hiroyuki Toh. Genes Cells 2004
86
17

Purification and characterization of three members of the photolyase/cryptochrome family blue-light photoreceptors from Vibrio cholerae.
Erin N Worthington, I Halil Kavakli, Gloria Berrocal-Tito, Bruce E Bondo, Aziz Sancar. J Biol Chem 2003
84
17

A cryptochrome-like protein is involved in the regulation of photosynthesis genes in Rhodobacter sphaeroides.
Anne-Kathrin Hendrischk, Sebastian Walter Frühwirth, Julia Moldt, Richard Pokorny, Sebastian Metz, Gebhard Kaiser, Andreas Jäger, Alfred Batschauer, Gabriele Klug. Mol Microbiol 2009
35
28



Electron transfer mechanisms of DNA repair by photolyase.
Dongping Zhong. Annu Rev Phys Chem 2015
60
16

Rhodobacter sphaeroides CryB is a bacterial cryptochrome with (6-4) photolyase activity.
Andrea von Zadow, Elisabeth Ignatz, Richard Pokorny, Lars-Oliver Essen, Gabriele Klug. FEBS J 2016
15
66


A flavin binding cryptochrome photoreceptor responds to both blue and red light in Chlamydomonas reinhardtii.
Benedikt Beel, Katja Prager, Meike Spexard, Severin Sasso, Daniel Weiss, Nico Müller, Mark Heinnickel, David Dewez, Danielle Ikoma, Arthur R Grossman,[...]. Plant Cell 2012
99
14

Identification and characterization of a second chromophore of DNA photolyase from Thermus thermophilus HB27.
Takumi Ueda, Akira Kato, Seiki Kuramitsu, Hiroaki Terasawa, Ichio Shimada. J Biol Chem 2005
36
25


Light-dependent functions of the Fusarium fujikuroi CryD DASH cryptochrome in development and secondary metabolism.
Marta Castrillo, Jorge García-Martínez, Javier Avalos. Appl Environ Microbiol 2013
45
20

Cryptochrome 3 from Arabidopsis thaliana: structural and functional analysis of its complex with a folate light antenna.
Tobias Klar, Richard Pokorny, Julia Moldt, Alfred Batschauer, Lars-Oliver Essen. J Mol Biol 2007
62
14

Natural and non-natural antenna chromophores in the DNA photolyase from Thermus thermophilus.
Tobias Klar, Gebhard Kaiser, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Chembiochem 2006
40
22

Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity.
Yihua Huang, Richard Baxter, Barbara S Smith, Carrie L Partch, Christopher L Colbert, Johann Deisenhofer. Proc Natl Acad Sci U S A 2006
93
14

Dealing with light: the widespread and multitasking cryptochrome/photolyase family in photosynthetic organisms.
Antonio Emidio Fortunato, Rossella Annunziata, Marianne Jaubert, Jean-Pierre Bouly, Angela Falciatore. J Plant Physiol 2015
62
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.