A citation-based method for searching scientific literature

Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews, Stuart McLaren, Ian Sealy, Mario Caccamo, Carol Churcher, Carol Scott, Jeffrey C Barrett, Romke Koch, Gerd-Jörg Rauch, Simon White, William Chow, Britt Kilian, Leonor T Quintais, José A Guerra-Assunção, Yi Zhou, Yong Gu, Jennifer Yen, Jan-Hinnerk Vogel, Tina Eyre, Seth Redmond, Ruby Banerjee, Jianxiang Chi, Beiyuan Fu, Elizabeth Langley, Sean F Maguire, Gavin K Laird, David Lloyd, Emma Kenyon, Sarah Donaldson, Harminder Sehra, Jeff Almeida-King, Jane Loveland, Stephen Trevanion, Matt Jones, Mike Quail, Dave Willey, Adrienne Hunt, John Burton, Sarah Sims, Kirsten McLay, Bob Plumb, Joy Davis, Chris Clee, Karen Oliver, Richard Clark, Clare Riddle, David Elliot, Glen Threadgold, Glenn Harden, Darren Ware, Sharmin Begum, Beverley Mortimore, Giselle Kerry, Paul Heath, Benjamin Phillimore, Alan Tracey, Nicole Corby, Matthew Dunn, Christopher Johnson, Jonathan Wood, Susan Clark, Sarah Pelan, Guy Griffiths, Michelle Smith, Rebecca Glithero, Philip Howden, Nicholas Barker, Christine Lloyd, Christopher Stevens, Joanna Harley, Karen Holt, Georgios Panagiotidis, Jamieson Lovell, Helen Beasley, Carl Henderson, Daria Gordon, Katherine Auger, Deborah Wright, Joanna Collins, Claire Raisen, Lauren Dyer, Kenric Leung, Lauren Robertson, Kirsty Ambridge, Daniel Leongamornlert, Sarah McGuire, Ruth Gilderthorp, Coline Griffiths, Deepa Manthravadi, Sarah Nichol, Gary Barker, Siobhan Whitehead, Michael Kay, Jacqueline Brown, Clare Murnane, Emma Gray, Matthew Humphries, Neil Sycamore, Darren Barker, David Saunders, Justene Wallis, Anne Babbage, Sian Hammond, Maryam Mashreghi-Mohammadi, Lucy Barr, Sancha Martin, Paul Wray, Andrew Ellington, Nicholas Matthews, Matthew Ellwood, Rebecca Woodmansey, Graham Clark, James D Cooper, Anthony Tromans, Darren Grafham, Carl Skuce, Richard Pandian, Robert Andrews, Elliot Harrison, Andrew Kimberley, Jane Garnett, Nigel Fosker, Rebekah Hall, Patrick Garner, Daniel Kelly, Christine Bird, Sophie Palmer, Ines Gehring, Andrea Berger, Christopher M Dooley, Zübeyde Ersan-Ürün, Cigdem Eser, Horst Geiger, Maria Geisler, Lena Karotki, Anette Kirn, Judith Konantz, Martina Konantz, Martina Oberländer, Silke Rudolph-Geiger, Mathias Teucke, Christa Lanz, Günter Raddatz, Kazutoyo Osoegawa, Baoli Zhu, Amanda Rapp, Sara Widaa, Cordelia Langford, Fengtang Yang, Stephan C Schuster, Nigel P Carter, Jennifer Harrow, Zemin Ning, Javier Herrero, Steve M J Searle, Anton Enright, Robert Geisler, Ronald H A Plasterk, Charles Lee, Monte Westerfield, Pieter J de Jong, Leonard I Zon, John H Postlethwait, Christiane Nüsslein-Volhard, Tim J P Hubbard, Hugues Roest Crollius, Jane Rogers, Derek L Stemple. Nature 2013
Times Cited: 2140







List of co-cited articles
431 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
17

Zebrafish as tools for drug discovery.
Calum A MacRae, Randall T Peterson. Nat Rev Drug Discov 2015
521
9

Zebrafish as an emerging model for studying complex brain disorders.
Allan V Kalueff, Adam Michael Stewart, Robert Gerlai. Trends Pharmacol Sci 2014
491
8

Use of Zebrafish in Drug Discovery Toxicology.
Steven Cassar, Isaac Adatto, Jennifer L Freeman, Joshua T Gamse, Iñaki Iturria, Christian Lawrence, Arantza Muriana, Randall T Peterson, Steven Van Cruchten, Leonard I Zon. Chem Res Toxicol 2020
118
5

Animal models of human disease: zebrafish swim into view.
Graham J Lieschke, Peter D Currie. Nat Rev Genet 2007
5

Understanding behavioral and physiological phenotypes of stress and anxiety in zebrafish.
Rupert J Egan, Carisa L Bergner, Peter C Hart, Jonathan M Cachat, Peter R Canavello, Marco F Elegante, Salem I Elkhayat, Brett K Bartels, Anna K Tien, David H Tien,[...]. Behav Brain Res 2009
697
5

Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond.
Allan V Kalueff, Michael Gebhardt, Adam Michael Stewart, Jonathan M Cachat, Mallorie Brimmer, Jonathan S Chawla, Cassandra Craddock, Evan J Kyzar, Andrew Roth, Samuel Landsman,[...]. Zebrafish 2013
470
5

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
5

Zebrafish as a Model for Obesity and Diabetes.
Liqing Zang, Lisette A Maddison, Wenbiao Chen. Front Cell Dev Biol 2018
82
6

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
5

Adult zebrafish heart as a model for human heart? An electrophysiological study.
Petros Nemtsas, Erich Wettwer, Torsten Christ, Gilbert Weidinger, Ursula Ravens. J Mol Cell Cardiol 2010
128
4

Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions.
Jakob Gierten, Christian Pylatiuk, Omar T Hammouda, Christian Schock, Johannes Stegmaier, Joachim Wittbrodt, Jochen Gehrig, Felix Loosli. Sci Rep 2020
25
16

Zebrafish as a Model for Drug Screening in Genetic Kidney Diseases.
Jochen Gehrig, Gunjan Pandey, Jens H Westhoff. Front Pediatr 2018
28
14

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
4


Zebrafish Behavior: Opportunities and Challenges.
Michael B Orger, Gonzalo G de Polavieja. Annu Rev Neurosci 2017
93
4

The Zebrafish Heart as a Model of Mammalian Cardiac Function.
Christine E Genge, Eric Lin, Ling Lee, XiaoYe Sheng, Kaveh Rayani, Marvin Gunawan, Charles M Stevens, Alison Yueh Li, Sanam Shafaat Talab, Thomas W Claydon,[...]. Rev Physiol Biochem Pharmacol 2016
31
12

Production of clones of homozygous diploid zebra fish (Brachydanio rerio).
G Streisinger, C Walker, N Dower, D Knauber, F Singer. Nature 1981
734
4

Drinks like a fish: zebra fish (Danio rerio) as a behavior genetic model to study alcohol effects.
R Gerlai, M Lahav, S Guo, A Rosenthal. Pharmacol Biochem Behav 2000
463
4

Molecular psychiatry of zebrafish.
A M Stewart, J F P Ullmann, W H J Norton, M O Parker, C H Brennan, R Gerlai, A V Kalueff. Mol Psychiatry 2015
119
4

Zebrafish neurotransmitter systems as potential pharmacological and toxicological targets.
E P Rico, D B Rosemberg, K J Seibt, K M Capiotti, R S Da Silva, C D Bonan. Neurotoxicol Teratol 2011
119
4

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Felipe A Simão, Robert M Waterhouse, Panagiotis Ioannidis, Evgenia V Kriventseva, Evgeny M Zdobnov. Bioinformatics 2015
4


A genetic screen for mutations affecting embryogenesis in zebrafish.
W Driever, L Solnica-Krezel, A F Schier, S C Neuhauss, J Malicki, D L Stemple, D Y Stainier, F Zwartkruis, S Abdelilah, Z Rangini,[...]. Development 1996
905
4

Optimizing multi-dimensional high throughput screening using zebrafish.
Lisa Truong, Sean M Bugel, Anna Chlebowski, Crystal Y Usenko, Michael T Simonich, Staci L Massey Simonich, Robert L Tanguay. Reprod Toxicol 2016
34
11

Development of the brain vasculature and the blood-brain barrier in zebrafish.
Claudia Quiñonez-Silvero, Kathleen Hübner, Wiebke Herzog. Dev Biol 2020
26
11

Optogenetic control of cardiac function.
Aristides B Arrenberg, Didier Y R Stainier, Herwig Baier, Jan Huisken. Science 2010
284
3

High-Throughput Video Processing of Heart Rate Responses in Multiple Wild-type Embryonic Zebrafish per Imaging Field.
W Kyle Martin, Alan H Tennant, Rory B Conolly, Katya Prince, Joey S Stevens, David M DeMarini, Brandi L Martin, Leslie C Thompson, M Ian Gilmour, Wayne E Cascio,[...]. Sci Rep 2019
10
30

Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish.
Stephan Daetwyler, Ulrik Günther, Carl D Modes, Kyle Harrington, Jan Huisken. Development 2019
13
23

Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR/Cas9-based approach.
Benedikt von der Heyde, Anastasia Emmanouilidou, Eugenia Mazzaferro, Silvia Vicenzi, Ida Höijer, Tiffany Klingström, Sitaf Jumaa, Olga Dethlefsen, Harold Snieder, Eco de Geus,[...]. Sci Rep 2020
6
50


Aging-associated sinus arrest and sick sinus syndrome in adult zebrafish.
Jianhua Yan, Hongsong Li, Haisong Bu, Kunli Jiao, Alex X Zhang, Tai Le, Hung Cao, Yigang Li, Yonghe Ding, Xiaolei Xu. PLoS One 2020
8
37


Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.
Olivier Jaillon, Jean-Marc Aury, Frédéric Brunet, Jean-Louis Petit, Nicole Stange-Thomann, Evan Mauceli, Laurence Bouneau, Cécile Fischer, Catherine Ozouf-Costaz, Alain Bernot,[...]. Nature 2004
3

De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication.
Zelin Chen, Yoshihiro Omori, Sergey Koren, Takuya Shirokiya, Takuo Kuroda, Atsushi Miyamoto, Hironori Wada, Asao Fujiyama, Atsushi Toyoda, Suiyuan Zhang,[...]. Sci Adv 2019
48
6

The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan.
Dario Riccardo Valenzano, Bérénice A Benayoun, Param Priya Singh, Elisa Zhang, Paul D Etter, Chi-Kuo Hu, Mathieu Clément-Ziza, David Willemsen, Rongfeng Cui, Itamar Harel,[...]. Cell 2015
108
3

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
3

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
Bruce J Walker, Thomas Abeel, Terrance Shea, Margaret Priest, Amr Abouelliel, Sharadha Sakthikumar, Christina A Cuomo, Qiandong Zeng, Jennifer Wortman, Sarah K Young,[...]. PLoS One 2014
3

Zebrafish in Toxicology and Environmental Health.
Kathryn Bambino, Jaime Chu. Curr Top Dev Biol 2017
122
3

Normal table of postembryonic zebrafish development: staging by externally visible anatomy of the living fish.
David M Parichy, Michael R Elizondo, Margaret G Mills, Tiffany N Gordon, Raymond E Engeszer. Dev Dyn 2009
418
3


The medaka draft genome and insights into vertebrate genome evolution.
Masahiro Kasahara, Kiyoshi Naruse, Shin Sasaki, Yoichiro Nakatani, Wei Qu, Budrul Ahsan, Tomoyuki Yamada, Yukinobu Nagayasu, Koichiro Doi, Yasuhiro Kasai,[...]. Nature 2007
714
3

A beginner's guide to understanding and implementing the genetic modification of zebrafish.
Sara A Rafferty, T Alexander Quinn. Prog Biophys Mol Biol 2018
34
8

A high-resolution mRNA expression time course of embryonic development in zebrafish.
Richard J White, John E Collins, Ian M Sealy, Neha Wali, Christopher M Dooley, Zsofia Digby, Derek L Stemple, Daniel N Murphy, Konstantinos Billis, Thibaut Hourlier,[...]. Elife 2017
119
3

An integrative analysis of ethanol tolerance and withdrawal in zebrafish (Danio rerio).
Steven Tran, Diptendu Chatterjee, Robert Gerlai. Behav Brain Res 2015
53
5

Multi-step usage of in vivo models during rational drug design and discovery.
Charles H Williams, Charles C Hong. Int J Mol Sci 2011
30
10

Gene expression changes in a zebrafish model of drug dependency suggest conservation of neuro-adaptation pathways.
Layla J M Kily, Yuka C M Cowe, Osman Hussain, Salma Patel, Suzanne McElwaine, Finbarr E Cotter, Caroline H Brennan. J Exp Biol 2008
108
3

Zebrafish: a model for the study of addiction genetics.
Eric W Klee, Henning Schneider, Karl J Clark, Margot A Cousin, Jon O Ebbert, W Michael Hooten, Victor M Karpyak, David O Warner, Stephen C Ekker. Hum Genet 2012
79
3




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.