A citation-based method for searching scientific literature

Cigall Kadoch, Diana C Hargreaves, Courtney Hodges, Laura Elias, Lena Ho, Jeff Ranish, Gerald R Crabtree. Nat Genet 2013
Times Cited: 729







List of co-cited articles
823 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes.
Nazar Mashtalir, Andrew R D'Avino, Brittany C Michel, Jie Luo, Joshua Pan, Jordan E Otto, Hayley J Zullow, Zachary M McKenzie, Rachel L Kubiak, Roodolph St Pierre,[...]. Cell 2018
220
33

The spectrum of SWI/SNF mutations, ubiquitous in human cancers.
A Hunter Shain, Jonathan R Pollack. PLoS One 2013
331
27


SWI/SNF nucleosome remodellers and cancer.
Boris G Wilson, Charles W M Roberts. Nat Rev Cancer 2011
801
19

Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.
Cedric R Clapier, Janet Iwasa, Bradley R Cairns, Craig L Peterson. Nat Rev Mol Cell Biol 2017
392
17

Epigenetic antagonism between polycomb and SWI/SNF complexes during oncogenic transformation.
Boris G Wilson, Xi Wang, Xiaohua Shen, Elizabeth S McKenna, Madeleine E Lemieux, Yoon-Jae Cho, Edward C Koellhoffer, Scott L Pomeroy, Stuart H Orkin, Charles W M Roberts. Cancer Cell 2010
390
16

Truncating mutations of hSNF5/INI1 in aggressive paediatric cancer.
I Versteege, N Sévenet, J Lange, M F Rousseau-Merck, P Ambros, R Handgretinger, A Aurias, O Delattre. Nature 1998
16

A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation.
Brittany C Michel, Andrew R D'Avino, Seth H Cassel, Nazar Mashtalir, Zachary M McKenzie, Matthew J McBride, Alfredo M Valencia, Qianhe Zhou, Michael Bocker, Luis M M Soares,[...]. Nat Cell Biol 2018
130
16

The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers.
Burak H Alver, Kimberly H Kim, Ping Lu, Xiaofeng Wang, Haley E Manchester, Weishan Wang, Jeffrey R Haswell, Peter J Park, Charles W M Roberts. Nat Commun 2017
141
15

SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation.
Xiaofeng Wang, Ryan S Lee, Burak H Alver, Jeffrey R Haswell, Su Wang, Jakub Mieczkowski, Yotam Drier, Shawn M Gillespie, Tenley C Archer, Jennifer N Wu,[...]. Nat Genet 2017
155
15

The SWI/SNF complex in cancer - biology, biomarkers and therapy.
Priya Mittal, Charles W M Roberts. Nat Rev Clin Oncol 2020
97
14

SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters.
Robert T Nakayama, John L Pulice, Alfredo M Valencia, Matthew J McBride, Zachary M McKenzie, Mark A Gillespie, Wai Lim Ku, Mingxiang Teng, Kairong Cui, Robert T Williams,[...]. Nat Genet 2017
111
13

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
12

ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice.
Radhika Mathur, Burak H Alver, Adrianna K San Roman, Boris G Wilson, Xiaofeng Wang, Agoston T Agoston, Peter J Park, Ramesh A Shivdasani, Charles W M Roberts. Nat Genet 2017
160
11

The Many Roles of BAF (mSWI/SNF) and PBAF Complexes in Cancer.
Courtney Hodges, Jacob G Kirkland, Gerald R Crabtree. Cold Spring Harb Perspect Med 2016
185
11

ARID1A Deficiency Impairs the DNA Damage Checkpoint and Sensitizes Cells to PARP Inhibitors.
Jianfeng Shen, Yang Peng, Leizhen Wei, Wei Zhang, Lin Yang, Li Lan, Prabodh Kapoor, Zhenlin Ju, Qianxing Mo, Ie-Ming Shih,[...]. Cancer Discov 2015
249
11

Structure of nucleosome-bound human BAF complex.
Shuang He, Zihan Wu, Yuan Tian, Zishuo Yu, Jiali Yu, Xinxin Wang, Jie Li, Bijun Liu, Yanhui Xu. Science 2020
82
13

Synthetic lethality by targeting EZH2 methyltransferase activity in ARID1A-mutated cancers.
Benjamin G Bitler, Katherine M Aird, Azat Garipov, Hua Li, Michael Amatangelo, Andrew V Kossenkov, David C Schultz, Qin Liu, Ie-Ming Shih, Jose R Conejo-Garcia,[...]. Nat Med 2015
383
11

A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells.
Jovylyn Gatchalian, Shivani Malik, Josephine Ho, Dong-Sung Lee, Timothy W R Kelso, Maxim N Shokhirev, Jesse R Dixon, Diana C Hargreaves. Nat Commun 2018
72
13

SWI/SNF chromatin remodeling and human malignancies.
Julien Masliah-Planchon, Ivan Bièche, Jean-Marc Guinebretière, Franck Bourdeaut, Olivier Delattre. Annu Rev Pathol 2015
181
10

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
10

SWI/SNF-mutant cancers depend on catalytic and non-catalytic activity of EZH2.
Kimberly H Kim, Woojin Kim, Thomas P Howard, Francisca Vazquez, Aviad Tsherniak, Jennifer N Wu, Weishan Wang, Jeffrey R Haswell, Loren D Walensky, William C Hahn,[...]. Nat Med 2015
245
10

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
Jianjiong Gao, Bülent Arman Aksoy, Ugur Dogrusoz, Gideon Dresdner, Benjamin Gross, S Onur Sumer, Yichao Sun, Anders Jacobsen, Rileen Sinha, Erik Larsson,[...]. Sci Signal 2013
10

Durable tumor regression in genetically altered malignant rhabdoid tumors by inhibition of methyltransferase EZH2.
Sarah K Knutson, Natalie M Warholic, Tim J Wigle, Christine R Klaus, Christina J Allain, Alejandra Raimondi, Margaret Porter Scott, Richard Chesworth, Mikel P Moyer, Robert A Copeland,[...]. Proc Natl Acad Sci U S A 2013
463
9

Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma.
Siân Jones, Tian-Li Wang, Ie-Ming Shih, Tsui-Lien Mao, Kentaro Nakayama, Richard Roden, Ruth Glas, Dennis Slamon, Luis A Diaz, Bert Vogelstein,[...]. Science 2010
842
9


Smarca4 ATPase mutations disrupt direct eviction of PRC1 from chromatin.
Benjamin Z Stanton, Courtney Hodges, Joseph P Calarco, Simon M G Braun, Wai Lim Ku, Cigall Kadoch, Keji Zhao, Gerald R Crabtree. Nat Genet 2017
112
9

ARID1A mutations in endometriosis-associated ovarian carcinomas.
Kimberly C Wiegand, Sohrab P Shah, Osama M Al-Agha, Yongjun Zhao, Kane Tse, Thomas Zeng, Janine Senz, Melissa K McConechy, Michael S Anglesio, Steve E Kalloger,[...]. N Engl J Med 2010
9

Dynamics of BAF-Polycomb complex opposition on heterochromatin in normal and oncogenic states.
Cigall Kadoch, Robert T Williams, Joseph P Calarco, Erik L Miller, Christopher M Weber, Simon M G Braun, John L Pulice, Emma J Chory, Gerald R Crabtree. Nat Genet 2017
143
9

ARID1A mutations in cancer: another epigenetic tumor suppressor?
Jennifer N Wu, Charles W M Roberts. Cancer Discov 2013
260
9

Systematic characterization of BAF mutations provides insights into intracomplex synthetic lethalities in human cancers.
Sandra Schick, André F Rendeiro, Kathrin Runggatscher, Anna Ringler, Bernd Boidol, Melanie Hinkel, Peter Májek, Loan Vulliard, Thomas Penz, Katja Parapatics,[...]. Nat Genet 2019
43
20

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
Ethan Cerami, Jianjiong Gao, Ugur Dogrusoz, Benjamin E Gross, Selcuk Onur Sumer, Bülent Arman Aksoy, Anders Jacobsen, Caitlin J Byrne, Michael L Heuer, Erik Larsson,[...]. Cancer Discov 2012
9

Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma.
Ignacio Varela, Patrick Tarpey, Keiran Raine, Dachuan Huang, Choon Kiat Ong, Philip Stephens, Helen Davies, David Jones, Meng-Lay Lin, Jon Teague,[...]. Nature 2011
860
9

Germline and somatic SMARCA4 mutations characterize small cell carcinoma of the ovary, hypercalcemic type.
Leora Witkowski, Jian Carrot-Zhang, Steffen Albrecht, Somayyeh Fahiminiya, Nancy Hamel, Eva Tomiak, David Grynspan, Emmanouil Saloustros, Javad Nadaf, Barbara Rivera,[...]. Nat Genet 2014
272
9

Clinicopathological and molecular characterization of SMARCA4-deficient thoracic sarcomas with comparison to potentially related entities.
Akihiko Yoshida, Eisuke Kobayashi, Takashi Kubo, Makoto Kodaira, Toru Motoi, Noriko Motoi, Kan Yonemori, Yuichiro Ohe, Shun-Ichi Watanabe, Akira Kawai,[...]. Mod Pathol 2017
84
9


The biology of chromatin remodeling complexes.
Cedric R Clapier, Bradley R Cairns. Annu Rev Biochem 2009
8

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
8

ARID1B is a specific vulnerability in ARID1A-mutant cancers.
Katherine C Helming, Xiaofeng Wang, Boris G Wilson, Francisca Vazquez, Jeffrey R Haswell, Haley E Manchester, Youngha Kim, Gregory V Kryukov, Mahmoud Ghandi, Andrew J Aguirre,[...]. Nat Med 2014
223
8

Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation.
Junwei Shi, Warren A Whyte, Cinthya J Zepeda-Mendoza, Joseph P Milazzo, Chen Shen, Jae-Seok Roe, Jessica L Minder, Fatih Mercan, Eric Wang, Melanie A Eckersley-Maslin,[...]. Genes Dev 2013
293
8

ATP-dependent chromatin remodeling: genetics, genomics and mechanisms.
Diana C Hargreaves, Gerald R Crabtree. Cell Res 2011
527
8

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
8

Vulnerabilities of mutant SWI/SNF complexes in cancer.
Katherine C Helming, Xiaofeng Wang, Charles W M Roberts. Cancer Cell 2014
159
8

SMARCA4-deficient Thoracic Sarcomas: Clinicopathologic Study of 30 Cases With an Emphasis on Their Nosology and Differential Diagnoses.
Raul Perret, Lara Chalabreysse, Sarah Watson, Isabelle Serre, Stephane Garcia, Fabien Forest, Violaine Yvorel, Daniel Pissaloux, Vincent Thomas de Montpreville, Julien Masliah-Planchon,[...]. Am J Surg Pathol 2019
65
10

Inhibition of EZH2 suppresses self-renewal and induces radiation sensitivity in atypical rhabdoid teratoid tumor cells.
Irina Alimova, Diane K Birks, Peter S Harris, Jeffrey A Knipstein, Sujatha Venkataraman, Victor E Marquez, Nicholas K Foreman, Rajeev Vibhakar. Neuro Oncol 2013
94
7

The SS18-SSX Fusion Oncoprotein Hijacks BAF Complex Targeting and Function to Drive Synovial Sarcoma.
Matthew J McBride, John L Pulice, Hannah C Beird, Davis R Ingram, Andrew R D'Avino, Jack F Shern, Gregory W Charville, Jason L Hornick, Robert T Nakayama, Enrique M Garcia-Rivera,[...]. Cancer Cell 2018
94
7

Tazemetostat, an EZH2 inhibitor, in relapsed or refractory B-cell non-Hodgkin lymphoma and advanced solid tumours: a first-in-human, open-label, phase 1 study.
Antoine Italiano, Jean-Charles Soria, Maud Toulmonde, Jean-Marie Michot, Carlo Lucchesi, Andrea Varga, Jean-Michel Coindre, Stephen J Blakemore, Alicia Clawson, Benjamin Suttle,[...]. Lancet Oncol 2018
281
7

SMARCA4 inactivation defines a group of undifferentiated thoracic malignancies transcriptionally related to BAF-deficient sarcomas.
Francois Le Loarer, Sarah Watson, Gaelle Pierron, Vincent Thomas de Montpreville, Stelly Ballet, Nelly Firmin, Aurelie Auguste, Daniel Pissaloux, Sandrine Boyault, Sandrine Paindavoine,[...]. Nat Genet 2015
160
7

Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex.
H Kwon, A N Imbalzano, P A Khavari, R E Kingston, M R Green. Nature 1994
634
7

An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network.
Lena Ho, Raja Jothi, Jehnna L Ronan, Kairong Cui, Keji Zhao, Gerald R Crabtree. Proc Natl Acad Sci U S A 2009
305
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.