A citation-based method for searching scientific literature

Alfonso Mondragón. Annu Rev Biophys 2013
Times Cited: 46







List of co-cited articles
472 articles co-cited >1



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Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA.
Nicholas J Reiter, Amy Osterman, Alfredo Torres-Larios, Kerren K Swinger, Tao Pan, Alfonso Mondragón. Nature 2010
189
50

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.
C Guerrier-Takada, K Gardiner, T Marsh, N Pace, S Altman. Cell 1983
47

Crystal structure of the RNA component of bacterial ribonuclease P.
Alfredo Torres-Larios, Kerren K Swinger, Andrey S Krasilnikov, Tao Pan, Alfonso Mondragón. Nature 2005
158
34

Crystal structure of a bacterial ribonuclease P RNA.
Alexei V Kazantsev, Angelika A Krivenko, Daniel J Harrington, Stephen R Holbrook, Paul D Adams, Norman R Pace. Proc Natl Acad Sci U S A 2005
155
28

Of proteins and RNA: the RNase P/MRP family.
Olga Esakova, Andrey S Krasilnikov. RNA 2010
153
23

Bacterial RNase P: a new view of an ancient enzyme.
Alexei V Kazantsev, Norman R Pace. Nat Rev Microbiol 2006
136
23

The Diversity of Ribonuclease P: Protein and RNA Catalysts with Analogous Biological Functions.
Bradley P Klemm, Nancy Wu, Yu Chen, Xin Liu, Kipchumba J Kaitany, Michael J Howard, Carol A Fierke. Biomolecules 2016
31
29

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.
Johann Holzmann, Peter Frank, Esther Löffler, Keiryn L Bennett, Christopher Gerner, Walter Rossmanith. Cell 2008
370
17

Basis for structural diversity in homologous RNAs.
Andrey S Krasilnikov, Yinghua Xiao, Tao Pan, Alfonso Mondragón. Science 2004
104
17

Evidence that substrate-specific effects of C5 protein lead to uniformity in binding and catalysis by RNase P.
Lei Sun, Frank E Campbell, Nathan H Zahler, Michael E Harris. EMBO J 2006
62
17

A general two-metal-ion mechanism for catalytic RNA.
T A Steitz, J A Steitz. Proc Natl Acad Sci U S A 1993
875
15


RNase P: interface of the RNA and protein worlds.
Donald Evans, Steven M Marquez, Norman R Pace. Trends Biochem Sci 2006
151
15

A divalent cation stabilizes the active conformation of the B. subtilis RNase P x pre-tRNA complex: a role for an inner-sphere metal ion in RNase P.
John Hsieh, Kristin S Koutmou, David Rueda, Markos Koutmos, Nils G Walter, Carol A Fierke. J Mol Biol 2010
23
30

The P4 metal binding site in RNase P RNA affects active site metal affinity through substrate positioning.
Eric L Christian, Kari M J Smith, Nicholas Perera, Michael E Harris. RNA 2006
36
19

The structural basis of ribosome activity in peptide bond synthesis.
P Nissen, J Hansen, N Ban, P B Moore, T A Steitz. Science 2000
13



Eukaryotic RNase P RNA mediates cleavage in the absence of protein.
Ema Kikovska, Staffan G Svärd, Leif A Kirsebom. Proc Natl Acad Sci U S A 2007
124
13

Ribonuclease P.
Sidney Altman. Philos Trans R Soc Lond B Biol Sci 2011
23
26

Archaeal/eukaryal RNase P: subunits, functions and RNA diversification.
Nayef Jarrous, Venkat Gopalan. Nucleic Acids Res 2010
82
13

A role for the catalytic ribonucleoprotein RNase P in RNA polymerase III transcription.
Robert Reiner, Yitzhak Ben-Asouli, Ilana Krilovetzky, Nayef Jarrous. Genes Dev 2006
77
13

Crystal structure of the specificity domain of ribonuclease P.
Andrey S Krasilnikov, Xiaojing Yang, Tao Pan, Alfonso Mondragón. Nature 2003
173
13




Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA.
S Niranjanakumari, T Stams, S M Crary, D W Christianson, C A Fierke. Proc Natl Acad Sci U S A 1998
140
13

Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.
K Kruger, P J Grabowski, A J Zaug, J Sands, D E Gottschling, T R Cech. Cell 1982
10


A view of RNase P.
Sidney Altman. Mol Biosyst 2007
62
10

Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.
Michael J Howard, Wan Hsin Lim, Carol A Fierke, Markos Koutmos. Proc Natl Acad Sci U S A 2012
76
10

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
10

Modular architecture of eukaryotic RNase P and RNase MRP revealed by electron microscopy.
Katharina Hipp, Kyriaki Galani, Claire Batisse, Simone Prinz, Bettina Böttcher. Nucleic Acids Res 2012
20
25

External guide sequences for an RNA enzyme.
A C Forster, S Altman. Science 1990
243
10

Protein activation of a ribozyme: the role of bacterial RNase P protein.
Amy H Buck, Andrew B Dalby, Alexander W Poole, Alexei V Kazantsev, Norman R Pace. EMBO J 2005
73
10

Protein-precursor tRNA contact leads to sequence-specific recognition of 5' leaders by bacterial ribonuclease P.
Kristin S Koutmou, Nathan H Zahler, Jeffrey C Kurz, Frank E Campbell, Michael E Harris, Carol A Fierke. J Mol Biol 2010
31
16


Structure of ribonuclease P--a universal ribozyme.
Alfredo Torres-Larios, Kerren K Swinger, Tao Pan, Alfonso Mondragón. Curr Opin Struct Biol 2006
56
10

Small self-cleaving ribozymes.
Adrian R Ferré-D'Amaré, William G Scott. Cold Spring Harb Perspect Biol 2010
119
8

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate.
Daniel J Klein, Adrian R Ferré-D'Amaré. Science 2006
269
8

A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene.
Kourosh Salehi-Ashtiani, Andrej Lupták, Alexander Litovchick, Jack W Szostak. Science 2006
189
8


Crystal structure of a hepatitis delta virus ribozyme.
A R Ferré-D'Amaré, K Zhou, J A Doudna. Nature 1998
583
8

Structure and function of the T-loop structural motif in noncoding RNAs.
Clarence W Chan, Bhaskar Chetnani, Alfonso Mondragón. Wiley Interdiscip Rev RNA 2013
38
10

The mechanism of peptidyl transfer catalysis by the ribosome.
Edward Ki Yun Leung, Nikolai Suslov, Nicole Tuttle, Raghuvir Sengupta, Joseph Anthony Piccirilli. Annu Rev Biochem 2011
35
11

Crystal structure of a self-spliced group II intron.
Navtej Toor, Kevin S Keating, Sean D Taylor, Anna Marie Pyle. Science 2008
338
8

Ribozyme-catalyzed transcription of an active ribozyme.
Aniela Wochner, James Attwater, Alan Coulson, Philipp Holliger. Science 2011
205
8

Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
8

RNase P RNAs from some Archaea are catalytically active.
J A Pannucci, E S Haas, T A Hall, J K Harris, J W Brown. Proc Natl Acad Sci U S A 1999
178
8

RNase P: increased versatility through protein complexity?
Michael C Marvin, David R Engelke. RNA Biol 2009
22
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.