A citation-based method for searching scientific literature

Ryan C Russell, Ye Tian, Haixin Yuan, Hyun Woo Park, Yu-Yun Chang, Joungmok Kim, Haerin Kim, Thomas P Neufeld, Andrew Dillin, Kun-Liang Guan. Nat Cell Biol 2013
Times Cited: 924







List of co-cited articles
1286 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
47

ULK-Atg13-FIP200 complexes mediate mTOR signaling to the autophagy machinery.
Chang Hwa Jung, Chang Bong Jun, Seung-Hyun Ro, Young-Mi Kim, Neil Michael Otto, Jing Cao, Mondira Kundu, Do-Hyung Kim. Mol Biol Cell 2009
20

Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy.
Nao Hosokawa, Taichi Hara, Takeshi Kaizuka, Chieko Kishi, Akito Takamura, Yutaka Miura, Shun-ichiro Iemura, Tohru Natsume, Kenji Takehana, Naoyuki Yamada,[...]. Mol Biol Cell 2009
19

ULK1.ATG13.FIP200 complex mediates mTOR signaling and is essential for autophagy.
Ian G Ganley, Du H Lam, Junru Wang, Xiaojun Ding, She Chen, Xuejun Jiang. J Biol Chem 2009
929
17

Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum.
Elizabeth L Axe, Simon A Walker, Maria Manifava, Priya Chandra, H Llewelyn Roderick, Anja Habermann, Gareth Griffiths, Nicholas T Ktistakis. J Cell Biol 2008
15

TFEB links autophagy to lysosomal biogenesis.
Carmine Settembre, Chiara Di Malta, Vinicia Assunta Polito, Moises Garcia Arencibia, Francesco Vetrini, Serkan Erdin, Serpil Uckac Erdin, Tuong Huynh, Diego Medina, Pasqualina Colella,[...]. Science 2011
15

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Daniel J Klionsky, Kotb Abdelmohsen, Akihisa Abe, Md Joynal Abedin, Hagai Abeliovich, Abraham Acevedo Arozena, Hiroaki Adachi, Christopher M Adams, Peter D Adams, Khosrow Adeli,[...]. Autophagy 2016
15

Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
15

Autophagy: renovation of cells and tissues.
Noboru Mizushima, Masaaki Komatsu. Cell 2011
15

Phosphorylation of ULK1 (hATG1) by AMP-activated protein kinase connects energy sensing to mitophagy.
Daniel F Egan, David B Shackelford, Maria M Mihaylova, Sara Gelino, Rebecca A Kohnz, William Mair, Debbie S Vasquez, Aashish Joshi, Dana M Gwinn, Rebecca Taylor,[...]. Science 2011
14

The role of Atg proteins in autophagosome formation.
Noboru Mizushima, Tamotsu Yoshimori, Yoshinori Ohsumi. Annu Rev Cell Dev Biol 2011
14

LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Y Kabeya, N Mizushima, T Ueno, A Yamamoto, T Kirisako, T Noda, E Kominami, Y Ohsumi, T Yoshimori. EMBO J 2000
14

WIPI2 links LC3 conjugation with PI3P, autophagosome formation, and pathogen clearance by recruiting Atg12-5-16L1.
Hannah C Dooley, Minoo Razi, Hannah E J Polson, Stephen E Girardin, Michael I Wilson, Sharon A Tooze. Mol Cell 2014
420
14

mTOR Signaling in Growth, Metabolism, and Disease.
Robert A Saxton, David M Sabatini. Cell 2017
13

Bcl-2 antiapoptotic proteins inhibit Beclin 1-dependent autophagy.
Sophie Pattingre, Amina Tassa, Xueping Qu, Rita Garuti, Xiao Huan Liang, Noboru Mizushima, Milton Packer, Michael D Schneider, Beth Levine. Cell 2005
13

An overview of autophagy: morphology, mechanism, and regulation.
Katherine R Parzych, Daniel J Klionsky. Antioxid Redox Signal 2014
909
12

Small Molecule Inhibition of the Autophagy Kinase ULK1 and Identification of ULK1 Substrates.
Daniel F Egan, Matthew G H Chun, Mitchell Vamos, Haixia Zou, Juan Rong, Chad J Miller, Hua Jane Lou, Dhanya Raveendra-Panickar, Chih-Cheng Yang, Douglas J Sheffler,[...]. Mol Cell 2015
382
12


Differential regulation of distinct Vps34 complexes by AMPK in nutrient stress and autophagy.
Joungmok Kim, Young Chul Kim, Chong Fang, Ryan C Russell, Jeong Hee Kim, Weiliang Fan, Rong Liu, Qing Zhong, Kun-Liang Guan. Cell 2013
482
12

Autophagy: process and function.
Noboru Mizushima. Genes Dev 2007
11


The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy.
Naonobu Fujita, Takashi Itoh, Hiroko Omori, Mitsunori Fukuda, Takeshi Noda, Tamotsu Yoshimori. Mol Biol Cell 2008
703
10

p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.
Serhiy Pankiv, Terje Høyvarde Clausen, Trond Lamark, Andreas Brech, Jack-Ansgar Bruun, Heidi Outzen, Aud Øvervatn, Geir Bjørkøy, Terje Johansen. J Biol Chem 2007
10

Two Beclin 1-binding proteins, Atg14L and Rubicon, reciprocally regulate autophagy at different stages.
Kohichi Matsunaga, Tatsuya Saitoh, Keisuke Tabata, Hiroko Omori, Takashi Satoh, Naoki Kurotori, Ikuko Maejima, Kanae Shirahama-Noda, Tohru Ichimura, Toshiaki Isobe,[...]. Nat Cell Biol 2009
798
10

A ubiquitin-like system mediates protein lipidation.
Y Ichimura, T Kirisako, T Takao, Y Satomi, Y Shimonishi, N Ishihara, N Mizushima, I Tanida, E Kominami, M Ohsumi,[...]. Nature 2000
10

A protein conjugation system essential for autophagy.
N Mizushima, T Noda, T Yoshimori, Y Tanaka, T Ishii, M D George, D J Klionsky, M Ohsumi, Y Ohsumi. Nature 1998
10

The Beclin 1 network regulates autophagy and apoptosis.
R Kang, H J Zeh, M T Lotze, D Tang. Cell Death Differ 2011
10

Autophagy in the pathogenesis of disease.
Beth Levine, Guido Kroemer. Cell 2008
10

Autophagy fights disease through cellular self-digestion.
Noboru Mizushima, Beth Levine, Ana Maria Cuervo, Daniel J Klionsky. Nature 2008
10

Regulation mechanisms and signaling pathways of autophagy.
Congcong He, Daniel J Klionsky. Annu Rev Genet 2009
10

AMPK phosphorylation of raptor mediates a metabolic checkpoint.
Dana M Gwinn, David B Shackelford, Daniel F Egan, Maria M Mihaylova, Annabelle Mery, Debbie S Vasquez, Benjamin E Turk, Reuben J Shaw. Mol Cell 2008
10

The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy.
Takao Hanada, Nobuo N Noda, Yoshinori Satomi, Yoshinobu Ichimura, Yuko Fujioka, Toshifumi Takao, Fuyuhiko Inagaki, Yoshinori Ohsumi. J Biol Chem 2007
738
9

The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy.
Michael Lazarou, Danielle A Sliter, Lesley A Kane, Shireen A Sarraf, Chunxin Wang, Jonathon L Burman, Dionisia P Sideris, Adam I Fogel, Richard J Youle. Nature 2015
9

Autophagosomes form at ER-mitochondria contact sites.
Maho Hamasaki, Nobumichi Furuta, Atsushi Matsuda, Akiko Nezu, Akitsugu Yamamoto, Naonobu Fujita, Hiroko Oomori, Takeshi Noda, Tokuko Haraguchi, Yasushi Hiraoka,[...]. Nature 2013
9

The ULK1 complex mediates MTORC1 signaling to the autophagy initiation machinery via binding and phosphorylating ATG14.
Ji-Man Park, Chang Hwa Jung, Minchul Seo, Neil Michael Otto, Douglas Grunwald, Kwan Hyun Kim, Branden Moriarity, Young-Mi Kim, Colby Starker, Richard Seonghun Nho,[...]. Autophagy 2016
149
9

The machinery of macroautophagy.
Yuchen Feng, Ding He, Zhiyuan Yao, Daniel J Klionsky. Cell Res 2014
9

The role of the Atg1/ULK1 complex in autophagy regulation.
Noboru Mizushima. Curr Opin Cell Biol 2010
718
9

FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells.
Taichi Hara, Akito Takamura, Chieko Kishi, Shun-Ichiro Iemura, Tohru Natsume, Jun-Lin Guan, Noboru Mizushima. J Cell Biol 2008
657
9

Promotion of tumorigenesis by heterozygous disruption of the beclin 1 autophagy gene.
Xueping Qu, Jie Yu, Govind Bhagat, Norihiko Furuya, Hanina Hibshoosh, Andrea Troxel, Jeffrey Rosen, Eeva-Liisa Eskelinen, Noboru Mizushima, Yoshinori Ohsumi,[...]. J Clin Invest 2003
9

Mammalian Atg18 (WIPI2) localizes to omegasome-anchored phagophores and positively regulates LC3 lipidation.
Hannah E J Polson, Jane de Lartigue, Daniel J Rigden, Marco Reedijk, Sylvie Urbé, Michael J Clague, Sharon A Tooze. Autophagy 2010
425
8

Autophagy: cellular and molecular mechanisms.
Danielle Glick, Sandra Barth, Kay F Macleod. J Pathol 2010
8

JNK1-mediated phosphorylation of Bcl-2 regulates starvation-induced autophagy.
Yongjie Wei, Sophie Pattingre, Sangita Sinha, Michael Bassik, Beth Levine. Mol Cell 2008
965
8


mTOR regulation of autophagy.
Chang Hwa Jung, Seung-Hyun Ro, Jing Cao, Neil Michael Otto, Do-Hyung Kim. FEBS Lett 2010
8

Beclin 1, an autophagy gene essential for early embryonic development, is a haploinsufficient tumor suppressor.
Zhenyu Yue, Shengkan Jin, Chingwen Yang, Arnold J Levine, Nathaniel Heintz. Proc Natl Acad Sci U S A 2003
8

Role of AMPK-mTOR-Ulk1/2 in the regulation of autophagy: cross talk, shortcuts, and feedbacks.
Sebastian Alers, Antje S Löffler, Sebastian Wesselborg, Björn Stork. Mol Cell Biol 2012
805
8

Spatiotemporal Control of ULK1 Activation by NDP52 and TBK1 during Selective Autophagy.
Jose Norberto S Vargas, Chunxin Wang, Eric Bunker, Ling Hao, Dragan Maric, Giampietro Schiavo, Felix Randow, Richard J Youle. Mol Cell 2019
176
8

Selective autophagy mediated by autophagic adapter proteins.
Terje Johansen, Trond Lamark. Autophagy 2011
8

Akt-mediated regulation of autophagy and tumorigenesis through Beclin 1 phosphorylation.
Richard C Wang, Yongjie Wei, Zhenyi An, Zhongju Zou, Guanghua Xiao, Govind Bhagat, Michael White, Julia Reichelt, Beth Levine. Science 2012
481
8

Targeting autophagy in cancer.
Jean M Mulcahy Levy, Christina G Towers, Andrew Thorburn. Nat Rev Cancer 2017
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.