A citation-based method for searching scientific literature

Run-Rui Zhang, Qing-Yan Cui, Kiyohito Murai, Yen Ching Lim, Zachary D Smith, Shengnan Jin, Peng Ye, Luis Rosa, Yew Kok Lee, Hai-Ping Wu, Wei Liu, Zhi-Mei Xu, Lu Yang, Yu-Qiang Ding, Fuchou Tang, Alexander Meissner, Chunming Ding, Yanhong Shi, Guo-Liang Xu. Cell Stem Cell 2013
Times Cited: 229







List of co-cited articles
908 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
49

Tet1 is critical for neuronal activity-regulated gene expression and memory extinction.
Andrii Rudenko, Meelad M Dawlaty, Jinsoo Seo, Albert W Cheng, Jia Meng, Thuc Le, Kym F Faull, Rudolf Jaenisch, Li-Huei Tsai. Neuron 2013
289
46

TET1 controls CNS 5-methylcytosine hydroxylation, active DNA demethylation, gene transcription, and memory formation.
Garrett A Kaas, Chun Zhong, Dawn E Eason, Daniel L Ross, Raj V Vachhani, Guo-Li Ming, Jennifer R King, Hongjun Song, J David Sweatt. Neuron 2013
273
40

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
33

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.
Shinsuke Ito, Ana C D'Alessio, Olena V Taranova, Kwonho Hong, Lawrence C Sowers, Yi Zhang. Nature 2010
32

5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging.
Keith E Szulwach, Xuekun Li, Yujing Li, Chun-Xiao Song, Hao Wu, Qing Dai, Hasan Irier, Anup K Upadhyay, Marla Gearing, Allan I Levey,[...]. Nat Neurosci 2011
558
28

Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis.
Maria A Hahn, Runxiang Qiu, Xiwei Wu, Arthur X Li, Heying Zhang, Jun Wang, Jonathan Jui, Seung-Gi Jin, Yong Jiang, Gerd P Pfeifer,[...]. Cell Rep 2013
299
27


Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development.
Meelad M Dawlaty, Kibibi Ganz, Benjamin E Powell, Yueh-Chiang Hu, Styliani Markoulaki, Albert W Cheng, Qing Gao, Jongpil Kim, Sang-Woon Choi, David C Page,[...]. Cell Stem Cell 2011
350
25

Ten-eleven translocation 2 interacts with forkhead box O3 and regulates adult neurogenesis.
Xuekun Li, Bing Yao, Li Chen, Yunhee Kang, Yujing Li, Ying Cheng, Liping Li, Li Lin, Zhiqin Wang, Mengli Wang,[...]. Nat Commun 2017
65
36

Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain.
Junjie U Guo, Yijing Su, Chun Zhong, Guo-li Ming, Hongjun Song. Cell 2011
945
22

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li,[...]. Science 2011
21

The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.
Tian-Peng Gu, Fan Guo, Hui Yang, Hai-Ping Wu, Gui-Fang Xu, Wei Liu, Zhi-Guo Xie, Linyu Shi, Xinyi He, Seung-gi Jin,[...]. Nature 2011
751
21


Neuronal activity modifies the DNA methylation landscape in the adult brain.
Junjie U Guo, Dengke K Ma, Huan Mo, Madeleine P Ball, Mi-Hyeon Jang, Michael A Bonaguidi, Jacob A Balazer, Hugh L Eaves, Bin Xie, Eric Ford,[...]. Nat Neurosci 2011
437
18

Global epigenomic reconfiguration during mammalian brain development.
Ryan Lister, Eran A Mukamel, Joseph R Nery, Mark Urich, Clare A Puddifoot, Nicholas D Johnson, Jacinta Lucero, Yun Huang, Andrew J Dwork, Matthew D Schultz,[...]. Science 2013
18

Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation.
Xiang Li, Wei Wei, Qiong-Yi Zhao, Jocelyn Widagdo, Danay Baker-Andresen, Charlotte R Flavell, Ana D'Alessio, Yi Zhang, Timothy W Bredy. Proc Natl Acad Sci U S A 2014
125
16

Tet2 Rescues Age-Related Regenerative Decline and Enhances Cognitive Function in the Adult Mouse Brain.
Geraldine Gontier, Manasi Iyer, Jeremy M Shea, Gregor Bieri, Elizabeth G Wheatley, Miguel Ramalho-Santos, Saul A Villeda. Cell Rep 2018
78
20

Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development.
Meelad M Dawlaty, Achim Breiling, Thuc Le, Günter Raddatz, M Inmaculada Barrasa, Albert W Cheng, Qing Gao, Benjamin E Powell, Zhe Li, Mingjiang Xu,[...]. Dev Cell 2013
293
15

Critical role of Tet3 in neural progenitor cell maintenance and terminal differentiation.
Ting Li, Dehua Yang, Jia Li, Yu Tang, Juan Yang, Weidong Le. Mol Neurobiol 2015
53
28

Tet3 regulates synaptic transmission and homeostatic plasticity via DNA oxidation and repair.
Huimei Yu, Yijing Su, Jaehoon Shin, Chun Zhong, Junjie U Guo, Yi-Lan Weng, Fuying Gao, Daniel H Geschwind, Giovanni Coppola, Guo-li Ming,[...]. Nat Neurosci 2015
104
15

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.
Kristine Williams, Jesper Christensen, Marianne Terndrup Pedersen, Jens V Johansen, Paul A C Cloos, Juri Rappsilber, Kristian Helin. Nature 2011
716
14

Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus eye and neural development.
Yufei Xu, Chao Xu, Akiko Kato, Wolfram Tempel, Jose Garcia Abreu, Chuanbing Bian, Yeguang Hu, Di Hu, Bin Zhao, Tanja Cerovina,[...]. Cell 2012
172
14

Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.
Kian Peng Koh, Akiko Yabuuchi, Sridhar Rao, Yun Huang, Kerrianne Cunniff, Julie Nardone, Asta Laiho, Mamta Tahiliani, Cesar A Sommer, Gustavo Mostoslavsky,[...]. Cell Stem Cell 2011
551
14

MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.
Marian Mellén, Pinar Ayata, Scott Dewell, Skirmantas Kriaucionis, Nathaniel Heintz. Cell 2012
631
13


Neuronal activity-induced Gadd45b promotes epigenetic DNA demethylation and adult neurogenesis.
Dengke K Ma, Mi-Hyeon Jang, Junjie U Guo, Yasuji Kitabatake, Min-Lin Chang, Nattapol Pow-Anpongkul, Richard A Flavell, Binfeng Lu, Guo-Li Ming, Hongjun Song. Science 2009
670
13

Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes.
Hao Wu, Volkan Coskun, Jifang Tao, Wei Xie, Weihong Ge, Kazuaki Yoshikawa, En Li, Yi Zhang, Yi Eve Sun. Science 2010
431
12

Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells.
Yun Huang, Lukas Chavez, Xing Chang, Xue Wang, William A Pastor, Jinsuk Kang, Jorge A Zepeda-Martínez, Utz J Pape, Steven E Jacobsen, Bjoern Peters,[...]. Proc Natl Acad Sci U S A 2014
176
11

Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation.
Kelly Moran-Crusio, Linsey Reavie, Alan Shih, Omar Abdel-Wahab, Delphine Ndiaye-Lobry, Camille Lobry, Maria E Figueroa, Aparna Vasanthakumar, Jay Patel, Xinyang Zhao,[...]. Cancer Cell 2011
841
11

Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis.
Jinsuk Kang, Matthias Lienhard, William A Pastor, Ashu Chawla, Mark Novotny, Ageliki Tsagaratou, Roger S Lasken, Elizabeth C Thompson, M Azim Surani, Sergei B Koralov,[...]. Proc Natl Acad Sci U S A 2015
64
17

Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA.
Aleksandra Szwagierczak, Sebastian Bultmann, Christine S Schmidt, Fabio Spada, Heinrich Leonhardt. Nucleic Acids Res 2010
316
11

Tet proteins influence the balance between neuroectodermal and mesodermal fate choice by inhibiting Wnt signaling.
Xiang Li, Xiaojing Yue, William A Pastor, Lizhu Lin, Romain Georges, Lukas Chavez, Sylvia M Evans, Anjana Rao. Proc Natl Acad Sci U S A 2016
58
18

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.
Chun-Xiao Song, Keith E Szulwach, Ye Fu, Qing Dai, Chengqi Yi, Xuekun Li, Yujing Li, Chih-Hsin Chen, Wen Zhang, Xing Jian,[...]. Nat Biotechnol 2011
709
11


Human DNA methylomes at base resolution show widespread epigenomic differences.
Ryan Lister, Mattia Pelizzola, Robert H Dowen, R David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo,[...]. Nature 2009
10

Mechanisms and functional implications of adult neurogenesis.
Chunmei Zhao, Wei Deng, Fred H Gage. Cell 2008
10

Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates.
Daniel Globisch, Martin Münzel, Markus Müller, Stylianos Michalakis, Mirko Wagner, Susanne Koch, Tobias Brückl, Martin Biel, Thomas Carell. PLoS One 2010
587
9

Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX.
Myunggon Ko, Jungeun An, Hozefa S Bandukwala, Lukas Chavez, Tarmo Aijö, William A Pastor, Matthew F Segal, Huiming Li, Kian Peng Koh, Harri Lähdesmäki,[...]. Nature 2013
247
9

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription.
William A Pastor, L Aravind, Anjana Rao. Nat Rev Mol Cell Biol 2013
561
9

Vitamin C modulates TET1 function during somatic cell reprogramming.
Jiekai Chen, Lin Guo, Lei Zhang, Haoyu Wu, Jiaqi Yang, He Liu, Xiaoshan Wang, Xiao Hu, Tianpeng Gu, Zhiwei Zhou,[...]. Nat Genet 2013
200
9

Lineage-specific functions of TET1 in the postimplantation mouse embryo.
Rita Khoueiry, Abhishek Sohni, Bernard Thienpont, Xinlong Luo, Joris Vande Velde, Michela Bartoccetti, Bram Boeckx, An Zwijsen, Anjana Rao, Diether Lambrechts,[...]. Nat Genet 2017
58
15

Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain.
Junjie U Guo, Yijing Su, Joo Heon Shin, Jaehoon Shin, Hongda Li, Bin Xie, Chun Zhong, Shaohui Hu, Thuc Le, Guoping Fan,[...]. Nat Neurosci 2014
450
9


TET-mediated DNA demethylation controls gastrulation by regulating Lefty-Nodal signalling.
Hai-Qiang Dai, Bang-An Wang, Lu Yang, Jia-Jia Chen, Guo-Chun Zhu, Mei-Ling Sun, Hao Ge, Rui Wang, Deborah L Chapman, Fuchou Tang,[...]. Nature 2016
102
9

Tet1 in Nucleus Accumbens Opposes Depression- and Anxiety-Like Behaviors.
Jian Feng, Catherine J Pena, Immanuel Purushothaman, Olivia Engmann, Deena Walker, Amber N Brown, Orna Issler, Marie Doyle, Eileen Harrigan, Ezekiell Mouzon,[...]. Neuropsychopharmacology 2017
33
27

DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
8



Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.
Kathryn Blaschke, Kevin T Ebata, Mohammad M Karimi, Jorge A Zepeda-Martínez, Preeti Goyal, Sahasransu Mahapatra, Angela Tam, Diana J Laird, Martin Hirst, Anjana Rao,[...]. Nature 2013
535
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.